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List of works by Jan Strugnell

A barcode of life database for the Cephalopoda? Considerations and concerns

A biogeographic framework of octopod species diversification: the role of the Isthmus of Panama

scientific article published on 27 March 2020

A coleoid gladius (Mollusca, Cephalopoda) from the Albian of Normandy (France): A new squid genus and species

article

A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda).

scientific article

A draft genome sequence of the elusive giant squid, Architeuthis dux

scientific article published on 01 January 2020

A mitochondrial phylogeny of the family Onychoteuthidae (Cephalopoda: Oegopsida)

scientific article published on 02 June 2018

A new pygmy squid, Idiosepius hallami n. sp. (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic ‘notoides’ clade to a new genus, Xipholeptos n. gen.

scientific article

A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905).

scientific article

A snail's pace: A preliminary analysis of the effects of stress and genetics on movement of Haliotis

article

Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

scientific article published on 01 November 2020

Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics

scientific article published in 2019

Allopatric speciation within a cryptic species complex of Australasian octopuses

scientific article published in 2014

Amundsen Sea Mollusca from the BIOPEARL II expedition

scientific article

Benthoctopus rigbyae, n. sp., A New Species of Cephalopod (Octopoda; Incirrata) from Near the Antarctic Peninsula

Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)

scientific article published on 25 September 2019

Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being.

scientific article published in March 2017

Body size, growth and life span: implications for the polewards range shift of Octopus tetricus in south-eastern Australia. ⬇️

scientific article

Can environmental DNA be used to detect first arrivals of the cane toad, <i>Rhinella marina</i>, into novel locations?

scientific article published in 2020

Cephalopod genomics: A plan of strategies and organization

scientific article (publication date: 10 October 2012)

Changes in tissue composition during larval development of the blacklip pearl oyster, Pinctada margaritifera (L.)

article

Closely related octopus species show different spatial genetic structures in response to the Antarctic seascape

scientific article published on 5 September 2017

Co-estimation of phylogeny and divergence times of Argonautoidea using relaxed phylogenetics

scientific article (publication date: March 2010)

Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus

scientific article

Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae)

scientific article published on 25 January 2019

Coupled Genomic Evolutionary Histories as Signatures of Organismal Innovations in Cephalopods: Co-evolutionary Signatures Across Levels of Genome Organization May Shed Light on Functional Linkage and Origin of Cephalopod Novelties

scientific article published on 30 October 2019

Cross-disciplinarity in the advance of Antarctic ecosystem research.

scientific article published on 29 September 2017

Cryptic speciation and the circumpolarity debate: A case study on endemic Southern Ocean octopuses using the COI barcode of life

DNA barcoding and molecular systematics of the benthic and demersal organisms of the CEAMARC survey

scholarly article by Agnes Dettai et al published August 2011 in Polar Science

Dating Antarctic ice sheet collapse: Proposing a molecular genetic approach

scholarly article

De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family.

scientific article published on 31 July 2014

De novo transcriptome assembly and functional annotation of the southern rock lobster (Jasus edwardsii)

Description and phylogenetic relationships of a new genus of octopus, Sasakiopus (Cephalopoda: Octopodidae), from the Bering Sea, with a redescription of Sasakiopus salebrosus (Sasaki, 1920)

scholarly article by Elaina M. Jorgensen et al published February 2010 in Journal of Molluscan Studies

Development of an STR panel for a non-native population of an endangered species

Diel Rhythm and Thermal Independence of Metabolic Rate in a Benthic Shark

scientific article published in 2022

Divergence time estimates for major cephalopod groups: evidence from multiple genes

article

Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus).

scientific article

Emerging biological archives can reveal ecological and climatic change in Antarctica

scientific article published in 2022

Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata

scientific article

Erratum to: Positive selection in octopus haemocyanin indicates functional links to temperature adaptation

scientific article published on 2 December 2015

Evolutionary innovations in Antarctic brittle stars linked to glacial refugia

scientific article published in 2021

Expanded description of Opisthoteuthis hardyi based on new specimens from the Patagonian slope

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 90 no. 3, July 2009

First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA

scientific article published on 27 April 2021

Future challenges in cephalopod research

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 95 no. 5, June 2014

Genetic analysis of hog deer (Axis porcinus) in Victoria, Australia, and its applications to invasive species and game management

scientific article published in 2022

Genetic diversity and population structure of the threatened freshwater catfish, Tandanus tandanus, in Victoria, Australia

article

Genetic evidence extends the known distribution of Octopus insularis to the mid-Atlantic islands Ascension and St Helena

article

Genomic evidence for West Antarctic Ice Sheet collapse during the Last Interglacial

scientific article published on 21 December 2023

Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts

scientific article published on 27 November 2020

Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas

scientific article published on 12 February 2018

Investigation of genetic structure between deep and shallow populations of the southern Rock Lobster, Jasus edwardsii in Tasmania, Australia

scientific article (publication date: 2013)

Long distance (>20 km) downstream detection of endangered stream frogs suggests an important role for eDNA in surveying for remnant amphibian populations

scientific article published on 27 September 2021

Low-coverage MiSeq next generation sequencing reveals the mitochondrial genome of the Eastern Rock Lobster, Sagmariasus verreauxi

scientific article

Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science

scientific article

Microsatellite loci from the endemic Southern Ocean octopus Adelieledone polymorpha (Robson, 1930).

scientific article

Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development

scientific article published on 12 September 2019

Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species

scientific article (publication date: 22 May 2013)

Molecular phylogenetic analysis of a known and a new hydrothermal vent octopod: their relationships with the genus Benthoctopus (Cephalopoda: Octopodidae) ⬇️

scientific article published in 2009

Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment and analysis methods

article

Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework

scientific article

Molecular techniques and their limitations shape our view of the holobiont

scientific article published on 16 July 2019

Morphological assessment of theOctopus vulgarisspecies complex evaluated in light of molecular-based phylogenetic inferences

scientific article published in 2016

Neotenous origins for pelagic octopuses

scientific article published in April 2004

Oceanographic processes shape genetic signatures of planktonic cephalopod paralarvae in two upwelling regions

Outlier SNPs detect weak regional structure against a background of genetic homogeneity in the Eastern Rock Lobster, Sagmariasus verreauxi

scientific article published in 2018

Outlier SNPs enable food traceability of the southern rock lobster, Jasus edwardsii

scientific article published in 2016

Patterns, processes and vulnerability of Southern Ocean benthos: a decadal leap in knowledge and understanding

article by Stefanie Kaiser et al published 25 April 2013 in Marine Biology

Poles apart: the "bipolar" pteropod species Limacina helicina is genetically distinct between the Arctic and Antarctic oceans

scientific article

Population genetic signatures of a climate change driven marine range extension.

scientific article

Positive selection in octopus haemocyanin indicates functional links to temperature adaptation

scientific article

Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer)

scientific article published in 2022

Profiles: Kudos for female Antarctic researchers ⬇️

scientific article

Quantitative Proteomic Analysis of the Slime and Ventral Mantle Glands of the Striped Pyjama Squid (Sepioloidea lineolata)

scientific article published on 05 March 2020

Reproductive capacity of a marine species (Octopus tetricus) within a recent range extension area

SNP data reveals the complex and diverse evolutionary history of the blue-ringed octopus genus (Octopodidae: Hapalochlaena) in the Asia-Pacific

scientific article published in 2023

Shotgun Proteomics Analysis of Saliva and Salivary Gland Tissue from the Common Octopus Octopus vulgaris

scientific article published on 27 September 2018

Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis

scientific article published on 04 September 2021

Small copepods could channel missing carbon through metazoan predation

scientific article published on 30 October 2018

Southern Ocean Evolution in a Global Context: A Molecular Viewpoint

Southern Ocean diversity: new paradigms from molecular ecology

scientific article

Temporal genetic patterns of diversity and structure evidence chaotic genetic patchiness in a spiny lobster.

scientific article

The Future of Aquatic Protein: Implications for Protein Sources in Aquaculture Diets

scientific article published on 22 November 2019

The complete mitochondrial genome of Axis porcinus (Mammalia: Cervidae) from Victoria, Australia, using MiSeq sequencing

article

The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing

scientific article published on 24 March 2014

The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae

scientific article published on 17 January 2014

The effect of commercial, natural and grape seed extract supplemented diets on gene expression signatures and survival of greenlip abalone ( Haliotis laevigata ) during heat stress

article

The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena)

scientific article published on 24 October 2018

The ink sac clouds octopod evolutionary history

The macro- and megabenthic fauna on the continental shelf of the eastern Amundsen Sea, Antarctica

scholarly article by Katrin Linse published in October 2013

The shell matrix and microstructure of the Ram's Horn squid: molecular and structural characterization

scientific article published on 15 April 2020

The thermohaline expressway: the Southern Ocean as a centre of origin for deep-sea octopuses

scientific article published in 2008

Toxicity in Cephalopods

article

What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda?

scientific article (publication date: 12 January 2011)

Whole mitochondrial genome of the Ram's Horn Squid shines light on the phylogenetic position of the monotypic order Spirulida (Haeckel, 1896).

scientific article

Widespread hybridization in the introduced hog deer population of Victoria, Australia, and its implications for conservation

scientific article published on 04 September 2019

You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey

scientific article

ampir: an R package for fast genome-wide prediction of antimicrobial peptides

scientific article published on 19 July 2020

drivers of recent diversification in a marine species complex

scientific article published on 20 December 2020

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