List of works - Ned Wingreen

A curvature-mediated mechanism for localization of lipids to bacterial poles

scientific article published on 05 October 2006

A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics.

scientific article

A quantitative comparison of sRNA-based and protein-based gene regulation

scientific article published on 14 October 2008

Accuracy of direct gradient sensing by single cells

scholarly article

Active regulation of receptor ratios controls integration of quorum-sensing signals in Vibrio harveyi

scientific article

Architectural transitions in Vibrio cholerae biofilms at single-cell resolution

scientific article published on March 2016

Asymmetry between Activators and Deactivators in Functional Protein Networks

scientific article published on 23 June 2020

Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling

scientific article published on 08 October 2018

Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling

scientific article published on 01 January 2019

Cell geometry and leaflet bilayer asymmetry regulate domain formation in plasma membranes

scientific article published on 01 January 2019

Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy

scientific article published on 11 June 2020

Cell shape and cell-wall organization in Gram-negative bacteria

scholarly article

Chemical sensing by nonequilibrium cooperative receptors.

scientific article published on 11 June 2013

Chemosensing in Escherichia coli: two regimes of two-state receptors

scholarly article

Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili

scientific article published on 15 February 2021

Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing

scientific article

Condensation and localization of the partitioning protein ParB on the bacterial chromosome.

scientific article

Correction: PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution

scientific article published on 10 July 2009

Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi

scientific article published on August 2008

Dynamic structures inEscherichia coli: Spontaneous formation of MinE rings and MinD polar zones ⬇️

scientific article published on October 20, 2003

Dynamics of cooperativity in chemical sensing among cell-surface receptors

scientific article published on 18 October 2011

Dynamics of local adaptation in a stable environmental gradient

scientific article published in 2021

Exponential sensitivity of noise-driven switching in genetic networks

scientific article published on 16 June 2008

Extracellular matrix structure governs invasion resistance in bacterial biofilms.

scientific article published on 20 January 2015

Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion

scientific article published on 23 August 2017

Global and gene-specific translational regulation in Escherichia coli across different conditions

scientific article published in 2022

Growth-induced instability in metabolic networks.

scientific article published on 30 March 2007

Hidden long evolutionary memory in a model biochemical network.

scientific article

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans

scientific article published on 25 June 2020

Information processing and signal integration in bacterial quorum sensing.

scientific article

Kondo model for the "0.7 anomaly" in transport through a quantum point contact

scientific article published on 21 October 2002

Landauer formula for the current through an interacting electron region

scientific article

Lipid localization in bacterial cells through curvature-mediated microphase separation

scientific article published on 4 April 2008

Local moment formation in quantum point contacts

scientific article published on 17 January 2003

Maximum likelihood and the single receptor.

scientific article published on 7 October 2009

Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell

scientific article

Mechanical instability and interfacial energy drive biofilm morphogenesis

scientific article published on 08 March 2019

Mechanics of membrane bulging during cell-wall disruption in gram-negative bacteria

scientific article published on 25 April 2011

Mechanism of bidirectional thermotaxis in Escherichia coli

scientific article published on 3 August 2017

Microbial consortia at steady supply

scientific article

Min-protein oscillations in round bacteria.

scientific article published in December 2004

Modeling evolution of crosstalk in noisy signal transduction networks.

scientific article published in February 2018

Motif-pattern dependence of biomolecular phase separation driven by specific interactions

scientific article published on 29 December 2021

Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response

scientific article

Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates

scientific article published on 19 March 2020

Nutrient levels and trade-offs control diversity in a serial dilution ecosystem

scientific article published on 11 September 2020

Optimal census by quorum sensing ⬇️

scientific article published on 12 May 2015

PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution

scientific article published on 28 November 2008

Pattern formation within Escherichia coli: diffusion, membrane attachment, and self-interaction of MinD molecules.

scientific article

Physical limits to biomechanical sensing in disordered fibre networks

scientific article

Physical model of protein cluster positioning in growing bacteria

scientific article published on 11 October 2017

Precise adaptation in bacterial chemotaxis through "assistance neighborhoods".

scholarly article

Probing bacterial transmembrane histidine kinase receptor-ligand interactions with natural and synthetic molecules

scientific article

Protein-level fluctuation correlation at the microcolony level and its application to the Vibrio harveyi quorum-sensing circuit

scientific article

Quantifying the integration of quorum-sensing signals with single-cell resolution

scientific article

Quorum sensing controls multicellular aggregate formation

scientific article published on 24 December 2018

Receptor-receptor coupling in bacterial chemotaxis: evidence for strongly coupled clusters

scientific article

Revealing evolutionary constraints on proteins through sequence analysis

scientific article published on 24 April 2019

Rigidity enhances a magic-number effect in polymer phase separation

scientific article published on 25 March 2020

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

scientific article published on 23 June 2021

Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio cholerae

scientific article published on 23 November 2021

Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy

scientific article published on 16 June 2009

Self-organized periodicity of protein clusters in growing bacteria.

scientific article published on 20 November 2008

Solutions to the public goods dilemma in bacterial biofilms

scientific article published on 12 December 2013

Surface tension and super-stoichiometric surface enrichment in two-component biomolecular condensates

scientific article published on 01 February 2022

The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters

scientific article published on 4 August 2008

The mechanical world of bacteria

scientific article

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

scientific article

Verticalization of bacterial biofilms.

scientific article published on 18 June 2018

Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging

scientific article published on 23 August 2016

Vibrio harveyi quorum sensing: a coincidence detector for two autoinducers controls gene expression

scientific article published on February 2003

Working together at the interface of physics and biology

scientific article published on 08 October 2014

List of works by Ned Wingreen

A curvature-mediated mechanism for localization of lipids to bacterial poles

A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics.

A quantitative comparison of sRNA-based and protein-based gene regulation

Accuracy of direct gradient sensing by single cells

Active regulation of receptor ratios controls integration of quorum-sensing signals in Vibrio harveyi

Architectural transitions in Vibrio cholerae biofilms at single-cell resolution

Asymmetry between Activators and Deactivators in Functional Protein Networks

Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling

Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling

Cell geometry and leaflet bilayer asymmetry regulate domain formation in plasma membranes

Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy

Cell shape and cell-wall organization in Gram-negative bacteria

Chemical sensing by nonequilibrium cooperative receptors.

Chemosensing in Escherichia coli: two regimes of two-state receptors

Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili

Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing

Condensation and localization of the partitioning protein ParB on the bacterial chromosome.

Correction: PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution

Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi

Dynamic structures inEscherichia coli: Spontaneous formation of MinE rings and MinD polar zones ⬇️

Dynamics of cooperativity in chemical sensing among cell-surface receptors

Dynamics of local adaptation in a stable environmental gradient

Exponential sensitivity of noise-driven switching in genetic networks

Extracellular matrix structure governs invasion resistance in bacterial biofilms.

Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion

Global and gene-specific translational regulation in Escherichia coli across different conditions

Growth-induced instability in metabolic networks.

Hidden long evolutionary memory in a model biochemical network.

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans

Information processing and signal integration in bacterial quorum sensing.

Kondo model for the "0.7 anomaly" in transport through a quantum point contact

Landauer formula for the current through an interacting electron region

Lipid localization in bacterial cells through curvature-mediated microphase separation

Local moment formation in quantum point contacts

Maximum likelihood and the single receptor.

Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell

Mechanical instability and interfacial energy drive biofilm morphogenesis

Mechanics of membrane bulging during cell-wall disruption in gram-negative bacteria

Mechanism of bidirectional thermotaxis in Escherichia coli

Microbial consortia at steady supply

Min-protein oscillations in round bacteria.

Modeling evolution of crosstalk in noisy signal transduction networks.

Motif-pattern dependence of biomolecular phase separation driven by specific interactions

Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response

Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates

Nutrient levels and trade-offs control diversity in a serial dilution ecosystem

Optimal census by quorum sensing ⬇️

PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution

Pattern formation within Escherichia coli: diffusion, membrane attachment, and self-interaction of MinD molecules.

Physical limits to biomechanical sensing in disordered fibre networks

Physical model of protein cluster positioning in growing bacteria

Precise adaptation in bacterial chemotaxis through "assistance neighborhoods".

Probing bacterial transmembrane histidine kinase receptor-ligand interactions with natural and synthetic molecules

Protein-level fluctuation correlation at the microcolony level and its application to the Vibrio harveyi quorum-sensing circuit

Quantifying the integration of quorum-sensing signals with single-cell resolution

Quorum sensing controls multicellular aggregate formation

Receptor-receptor coupling in bacterial chemotaxis: evidence for strongly coupled clusters

Revealing evolutionary constraints on proteins through sequence analysis

Rigidity enhances a magic-number effect in polymer phase separation

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio cholerae

Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy

Self-organized periodicity of protein clusters in growing bacteria.

Solutions to the public goods dilemma in bacterial biofilms

Surface tension and super-stoichiometric surface enrichment in two-component biomolecular condensates

The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters

The mechanical world of bacteria

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

Verticalization of bacterial biofilms.

Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging

Vibrio harveyi quorum sensing: a coincidence detector for two autoinducers controls gene expression

Working together at the interface of physics and biology