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List of works by Adam Bogdanove

A Confounding Effect of Bacterial Titer in a Type III Delivery-Based Assay of Eukaryotic Effector Function

scientific article published on 12 September 2018

A Reference Genome Sequence for Giant Sequoia

scientific article published on 18 September 2020

A Strain of an Emerging Indian pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene Without Inducing a Clade III Gene and Is Nearly Identical to a Recent Thai Isolate

article

A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host

scientific article published on 06 July 2020

A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola

scientific article published on 20 May 2016

A simple cipher governs DNA recognition by TAL effectors

scientific article

A transcription activator-like effector from Xanthomonas oryzae pv. oryzicola elicits dose-dependent resistance in rice

scientific article published on 29 January 2016

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes

scientific article

Achieving Controlled Recombination with Targeted Cleavage and Epigenetic Modifiers

scientific article published on 22 January 2020

Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in xanthomonas

scientific article

Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak

scientific article published on 2 July 2012

An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection

scientific article published on 17 December 2021

An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain

scientific article published on 21 October 2020

Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels.

scientific article published on January 2007

Anent-kaurene-derived diterpenoid virulence factor fromXanthomonas oryzaepv. oryzicola

scientific article published on 18 November 2014

Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens

scientific article (publication date: May 2013)

Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Pathogen Virulence in Powdery Mildew of Barley (Hordeum vulgare L.).

scientific article published on 4 May 2015

Cloning of the rice Xo1 resistance gene and interaction of the Xo1 protein with the defense-suppressing Xanthomonas effector Tal2h

scientific article published on 04 August 2020

Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.

scientific article

Complete Genome Sequences of Xanthomonas axonopodis pv. glycines Isolates from the United States and Thailand Reveal Conserved Transcription Activator-Like Effectors

scientific article published on 01 May 2019

Complete Genome Sequencing and Targeted Mutagenesis Reveal Virulence Contributions of Tal2 and Tal4b of Xanthomonas translucens pv. undulosa ICMP11055 in Bacterial Leaf Streak of Wheat.

scientific article published on 10 August 2017

Convergent Evolution of Effector Protease Recognition by Arabidopsis and Barley

scientific article published on 01 April 2019

Counting on Crossovers: Controlled Recombination for Plant Breeding

scientific article published on 17 January 2020

Development of a web course on gene therapy by the international consortium of gene therapy

scientific article published on March 2014

Effector Diversification Contributes to Xanthomonas oryzae pv. oryzae Phenotypic Adaptation in a Semi-Isolated Environment

scientific article published on 26 September 2016

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

scientific article

Engineering altered protein-DNA recognition specificity.

scientific article published in June 2018

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

article

Genetic mapping of a major gene in triticale conferring resistance to bacterial leaf streak.

scientific article published on 7 December 2017

Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing

scientific article published on 27 January 2020

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

scientific article

Host-Induced Gene Silencing in Barley Powdery Mildew Reveals a Class of Ribonuclease-Like Effectors

article

Inhibition of resistance gene-mediated defense in rice by Xanthomonas oryzae pv. oryzicola

scientific article published on 01 March 2006

Inoculation and Virulence Assay for Bacterial Blight and Bacterial Leaf Streak of Rice ⬇️

scientific article published on January 1, 2013

Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola as revealed by mutational analysis

scientific article

Online Tools for TALEN Design

scientific article published on 01 January 2016

Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference.

scientific article published on 5 October 2009

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions

scientific article published on 11 April 2011

Prevalence and diversity of TAL effector-like proteins in fungal endosymbiotic Mycetohabitans spp.

scientific article published in 2024

Principles and applications of TAL effectors for plant physiology and metabolism

scientific article

Protein-protein interactions in pathogen recognition by plants

scientific article

Pseudomonas syringae effector avrB confers soybean cultivar-specific avirulence on Soybean mosaic virus adapted for transgene expression but effector avrPto does not.

scientific article published in March 2006

Pto update: recent progress on an ancient plant defence response signalling pathway.

scientific article published on July 2002

Requirement of the lipopolysaccharide O-chain biosynthesis gene wxocB for type III secretion and virulence of Xanthomonas oryzae pv. Oryzicola

scientific article published on 22 February 2013

Single molecule real-time sequencing of Xanthomonas oryzae genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships.

scientific article published on 13 October 2015

Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae

scientific article published on 13 October 2016

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction

scientific article

TAL Effectors Drive Transcription Bidirectionally in Plants.

scientific article

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton.

scientific article

TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1.

scientific article

TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors

scientific article published on 21 July 2015

TAL effectors: customizable proteins for DNA targeting

scientific article

TAL effectors: finding plant genes for disease and defense

scientific article published on June 2010

TAL effectors: function, structure, engineering and applications

scientific article published on 22 December 2012

TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins

scientific article published on 23 May 2013

TALEN-mediated editing of the mouse Y chromosome

scientific article published on 12 May 2013

Targeting DNA double-strand breaks with TAL effector nucleases

scientific article

Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues

scientific article

The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target

scientific article

The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs

scientific article

The effect of increasing numbers of repeats on TAL effector DNA binding specificity

scientific article

The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers

scientific article

Tools for TAL effector design and target prediction

scientific article

Transcript profiling in host-pathogen interactions

scientific article published on January 2007

Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae

scientific article published on 18 October 2012

Transcription activator-like effector nucleases enable efficient plant genome engineering.

scientific article

Transfer of Xanthomonas campestris pv. arecae and X. campestris pv. musacearum to X. vasicola (Vauterin) as X. vasicola pv. arecae comb. nov. and X. vasicola pv. musacearum comb. nov. and Description of X. vasicola pv. vasculorum pv. nov

scientific article published on 10 January 2020

Transfer of Xanthomonas campestris pv. arecae, and Xanthomonas campestris pv. musacearum to Xanthomonas vasicola (Vauterin) as Xanthomonas vasicola pv. arecae comb. nov., and Xanthomonas vasicola pv. musacearum comb. nov. and description of Xanthomon

Translating the genomics revolution: the need for an international gene therapy consortium for monogenic diseases

scientific article published in February 2013

Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire.

scientific article published on 20 April 2018

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

scientific article

Understanding the functions of plant disease resistance proteins

scientific article published on January 2003

Xanthomonas campestris Pathovars

scientific article published on 29 June 2020

Xanthomonas oryzae pathovars: model pathogens of a model crop

scientific article published on 01 September 2006

daTALbase: a database for genomic and transcriptomic data related to TAL effectors

scientific article

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