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List of works by Barry Honig

A Sweep of Earth's Virome Reveals Host-Guided Viral Protein Structural Mimicry and Points to Determinants of Human Disease

scientific article published on 08 October 2020

A computational interactome and functional annotation for the human proteome.

scientific article published on 22 October 2016

Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics

scientific article

Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis

scientific article published on 08 June 2020

Calculation of electrostatic effects at the amino terminus of an alpha helix ⬇️

scientific article published on December 1, 1994

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins ⬇️

scientific article published on December 9, 2011

Crystal Structures of β-Neurexin 1 and β-Neurexin 2 Ectodomains and Dynamics of Splice Insertion Sequence 4

scientific article

Crystal structure of the extracellular cholinesterase-like domain from neuroligin-2

scientific article

Crystal structures of Drosophila N-cadherin ectodomain regions reveal a widely used class of Ca2+-free interdomain linkers

scientific article

Crystal structures of MTH1187 and its yeast ortholog YBL001c

scientific article

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

scientific article

Electrostatic Contributions to the Binding Free Energy of the λcI Repressor to DNA ⬇️

scientific article published on November 1, 1998

Electrostatic interaction of myristoylated proteins with membranes: simple physics, complicated biology ⬇️

scientific article published on August 15, 1997

Electrostatics and the Membrane Association of Src: Theory and Experiment ⬇️

scientific article published on February 24, 1998

Free Energy Perturbation Calculation of Relative Binding Free Energy between Broadly Neutralizing Antibodies and the gp120 Glycoprotein of HIV-1.

scientific article

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

scientific article

Genetic Drivers of Kidney Defects in the DiGeorge Syndrome

scientific article

Genome-wide Functional Annotation of Dual-Specificity Protein- and Lipid-Binding Modules that Regulate Protein Interactions ⬇️

scientific article published on March 22, 2012

Loop L5 acts as a conformational latch in the mitotic kinesin Eg5

scientific article

Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2.

scientific article

Molecular basis of sidekick-mediated cell-cell adhesion and specificity

scientific article published on 19 September 2016

Molecular design principles underlying β-strand swapping in the adhesive dimerization of cadherins

scientific article

NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif

scientific article

Nectin ectodomain structures reveal a canonical adhesive interface

scientific article

PrePPI: a structure-informed database of protein–protein interactions ⬇️

scientific article published on November 27, 2012

PredUs: a web server for predicting protein interfaces using structural neighbors ⬇️

scientific article published on May 23, 2011

Predicting peptide-mediated interactions on a genome-wide scale

scientific article published on 4 May 2015

Salt effects on nucleic acids ⬇️

scientific article published on June 1, 1995

Silencing c-Myc translation as a therapeutic strategy through targeting PI3Kδ and CK1ε in hematological malignancies

scientific article (publication date: 5 January 2017)

Solution NMR structure of the 30S ribosomal protein S28E fromPyrococcus horikoshii

scientific article

Solution NMR structures of proteins VPA0419 fromVibrio parahaemolyticusand yiiS fromShigella flexneriprovide structural coverage for protein domain family PFAM 04175

scientific article

Solution structure ofVibrio choleraeprotein VC0424: A variation of the ferredoxin-like fold

scientific article

Splice Form Dependence of β-Neurexin/Neuroligin Binding Interactions

scientific article

Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogenStaphylococcus saprophyticus

scientific article

Structure and Binding Mechanism of Vascular Endothelial Cadherin: A Divergent Classical Cadherin

scientific article

T-cadherin structures reveal a novel adhesive binding mechanism

scientific article

Template-based prediction of protein function

scientific article

The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins

scientific article

The role of DNA shape in protein-DNA recognition

scientific article

Theory and Simulations of Adhesion Receptor Dimerization on Membrane Surfaces ⬇️

scientific article published on March 19, 2013

Thinking outside the cell: how cadherins drive adhesion ⬇️

scientific article published on May 1, 2012

Toward a “Structural BLAST”: Using structural relationships to infer function ⬇️

scientific article published on February 21, 2013

Transforming binding affinities from three dimensions to two with application to cadherin clustering ⬇️

scientific article published on July 27, 2011

Two-step adhesive binding by classical cadherins

scientific article

Using Structure to Explore the Sequence Alignment Space of Remote Homologs ⬇️

scientific article published on October 6, 2011

VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity ⬇️

scientific article published on August 12, 2010

α-Catenin-mediated cadherin clustering couples cadherin and actin dynamics

scientific article

γ-Protocadherin structural diversity and functional implications

scientific article published on 26 October 2016

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