List of works - George Karypis

A Boolean algorithm for reconstructing the structure of regulatory networks

scientific article published in October 2004

A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs

scientific article (publication date: 1998)

An analysis of information content present in protein-DNA interactions

scientific article published on 01 January 2008

Assessing synthetic accessibility of chemical compounds using machine learning methods

scientific article

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

scientific article published on 4 July 2016

Building multiclass classifiers for remote homology detection and fold recognition

scientific article published on 16 October 2006

Clustering in Life Sciences ⬇️

scientific article published on January 1, 2003

Clustering methodologies for identifying country core competencies

Common pharmacophore identification using frequent clique detection algorithm

scientific article published in January 2009

Data Mining in Bioinformatics (BIOKDD).

scientific article

Data clustering in life sciences

scientific article

Directed Graphs

Discerning key parameters influencing high productivity and quality through recognition of patterns in process data ⬇️

scientific article published on November 22, 2011

Effective optimization algorithms for fragment-assembly based protein structure prediction

scientific article published on 01 April 2007

Effective optimization algorithms for fragment-assembly based protein structure prediction.

scientific article

Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing

scientific article

Feature mining for prediction of degree of liver fibrosis.

scientific article published on January 2005

Genome-wide inference of regulatory networks in Streptomyces coelicolor

scientific article

Improved estimation of structure predictor quality.

scientific article

Improved machine learning models for predicting selective compounds

scientific article

Improving homology models for protein-ligand binding sites.

scientific article published in January 2008

Incremental window-based protein sequence alignment algorithms

scientific article published in January 2007

Indirect similarity based methods for effective scaffold-hopping in chemical compounds

scientific article published on 11 April 2008

Item-based collaborative filtering recommendation algorithms ⬇️

scholarly article

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction

scientific article

Learning preferences of new users in recommender systems

article

Macromolecule mass spectrometry: citation mining of user documents

scientific article

Method for effective virtual screening and scaffold-hopping in chemical compounds.

scientific article published in January 2007

Mining bioprocess data: opportunities and challenges

scientific article

Mining manufacturing data for discovery of high productivity process characteristics

scientific article

Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody

scientific article

Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets.

scientific article

Multivariate analysis of cell culture bioprocess data—Lactate consumption as process indicator ⬇️

scientific article published on September 10, 2012

Myrinet

article

Pareto optimal pairwise sequence alignment.

scientific article published in March 2013

Partitioning-based clustering for Web document categorization

Profile-based direct kernels for remote homology detection and fold recognition

scientific article published on 27 September 2005

QCRNA 1.0: a database of quantum calculations for RNA catalysis

scientific article published on 3 April 2006

TOPTMH: topology predictor for transmembrane alpha-helices

scientific article published in February 2010

Target fishing for chemical compounds using target-ligand activity data and ranking based methods

scientific article

The structure and infrastructure of Mexico's science and technology

Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor

scientific article

fRMSDPred: predicting local RMSD between structural fragments using sequence information.

scientific article

svmPRAT: SVM-based protein residue annotation toolkit

scientific article

wCLUTO: a Web-enabled clustering toolkit

scientific article

List of works by George Karypis

A Boolean algorithm for reconstructing the structure of regulatory networks

A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs

An analysis of information content present in protein-DNA interactions

Assessing synthetic accessibility of chemical compounds using machine learning methods

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

Building multiclass classifiers for remote homology detection and fold recognition

Clustering in Life Sciences ⬇️

Clustering methodologies for identifying country core competencies

Common pharmacophore identification using frequent clique detection algorithm

Data Mining in Bioinformatics (BIOKDD).

Data clustering in life sciences

Directed Graphs

Discerning key parameters influencing high productivity and quality through recognition of patterns in process data ⬇️

Effective optimization algorithms for fragment-assembly based protein structure prediction

Effective optimization algorithms for fragment-assembly based protein structure prediction.

Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing

Feature mining for prediction of degree of liver fibrosis.

Genome-wide inference of regulatory networks in Streptomyces coelicolor

Improved estimation of structure predictor quality.

Improved machine learning models for predicting selective compounds

Improving homology models for protein-ligand binding sites.

Incremental window-based protein sequence alignment algorithms

Indirect similarity based methods for effective scaffold-hopping in chemical compounds

Item-based collaborative filtering recommendation algorithms ⬇️

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction

Learning preferences of new users in recommender systems

Macromolecule mass spectrometry: citation mining of user documents

Method for effective virtual screening and scaffold-hopping in chemical compounds.

Mining bioprocess data: opportunities and challenges

Mining manufacturing data for discovery of high productivity process characteristics

Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody

Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets.

Multivariate analysis of cell culture bioprocess data—Lactate consumption as process indicator ⬇️

Myrinet

Pareto optimal pairwise sequence alignment.

Partitioning-based clustering for Web document categorization

Profile-based direct kernels for remote homology detection and fold recognition

QCRNA 1.0: a database of quantum calculations for RNA catalysis

TOPTMH: topology predictor for transmembrane alpha-helices

Target fishing for chemical compounds using target-ligand activity data and ranking based methods

The structure and infrastructure of Mexico's science and technology

Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor

fRMSDPred: predicting local RMSD between structural fragments using sequence information.

svmPRAT: SVM-based protein residue annotation toolkit

wCLUTO: a Web-enabled clustering toolkit