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List of works by Stefan Schuster

A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism

scientific article published on 19 May 2016

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number

scientific article published in August 2003

A theoretical approach to the evolution and structural design of enzymatic networks: linear enzymatic chains, branched pathways and glycolysis of erythrocytes

scientific article published in January 1987

Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase. A theoretical study using elementary flux modes

scientific article

Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions

scientific article

Biochemical frequency control by synchronisation of coupled repressilators: an in silico study of modules for circadian clock systems

scientific article published on 20 October 2011

Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria

scientific article published on March 2002

Calculating as many fluxes as possible in underdetermined metabolic networks

scientific article published in January 2002

Can single knockouts accurately single out gene functions?

scientific article published on 18 June 2008

Can sugars be produced from fatty acids? A test case for pathway analysis tools

article

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

scientific article

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

scientific article published on 18 June 2009

Causes of upregulation of glycolysis in lymphocytes upon stimulation. A comparison with other cell types

scientific article published on 14 September 2015

Challenges in microbial ecology: building predictive understanding of community function and dynamics ⬇️

scientific article published on 29 March 2016

Combining metabolic pathway analysis with Evolutionary Game Theory: explaining the occurrence of low-yield pathways by an analytic optimization approach

scientific article published on 19 May 2011

Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion

scientific article published on 02 October 2018

Comparison of network-based pathway analysis methods

scientific article

Computing the shortest elementary flux modes in genome-scale metabolic networks

scientific article published on 30 September 2009

Computing the various pathways of penicillin synthesis and their molar yields

scientific article published on July 2015

Control analysis of metabolic systems involving quasi-equilibrium reactions

scientific article published on March 1998

Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications

scientific article published in July 2010

Decision-making of the benthic diatom Seminavis robusta searching for inorganic nutrients and pheromones

scientific article published on 09 October 2018

Defining control coefficients in non-ideal metabolic pathways

article

Detecting and investigating substrate cycles in a genome-scale human metabolic network

scientific article published on 17 August 2012

Detecting structural invariants in biological reaction networks

scientific article published on January 2012

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

scientific article

Determination of scoring functions for protein damage susceptibility

scientific article published on 12 October 2019

Discrimination between random and non-random processes in early bacterial colonization on biomaterial surfaces: application of point pattern analysis

scientific article

Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes.

scientific article published in January 2013

Effect of substrate competition in kinetic models of metabolic networks

scientific article published on 26 June 2013

Evolutionary game theory: cells as players

scientific article

Evolutionary game theory: molecules as players

scientific article published on December 2014

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

scientific article published in February 2002

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

scientific article

Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study

scientific article published on 11 October 2013

GC content dependency of open reading frame prediction via stop codon frequencies ⬇️

scientific article published on September 19, 2012

Hands-on metabolism analysis of complex biochemical networks using elementary flux modes

scientific article published in January 2011

Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies

scientific article

In silico evidence for gluconeogenesis from fatty acids in humans

scientific article published in July 2011

Influence of Platelet-rich Plasma on the immune response of human monocyte-derived dendritic cells and macrophages stimulated with Aspergillus fumigatus

scientific article published on 09 December 2016

Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth

scientific article

Integrated network reconstruction, visualization and analysis using YANAsquare.

scientific article

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis ⬇️

scientific article

Is maximization of molar yield in metabolic networks favoured by evolution?

article published in 2008

Is metabolic channelling the complicated solution to the easy problem of reducing transient times?

scientific article published in September 1991

Linear programming model can explain respiration of fermentation products.

scientific article published on 7 February 2018

METATOOL: for studying metabolic networks.

scientific article published in March 1999

Mathematical analysis of enzymic reaction systems using optimization principles

scientific article published on October 1991

Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production

scientific article

Metabolic adaptation and protein complexes in prokaryotes

scientific article published on 16 November 2012

Metabolic costs of amino acid and protein production in Escherichia coli

scientific article published on 15 July 2013

Metabolic network structure determines key aspects of functionality and regulation

scientific article (publication date: 14 November 2002)

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

scientific article published on 06 August 2010

Metatool 5.0: fast and flexible elementary modes analysis

scientific article published on 26 May 2006

Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism

scientific article published in January 1991

Mitochondria as an important factor in the maintenance of constant amplitudes of cytosolic calcium oscillations

scientific article published on 01 April 1998

Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data

scientific article

Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii

scientific article published on 4 March 2012

Modeling the interrelations between the calcium oscillations and ER membrane potential oscillations

scientific article published in January 1997

Modelling the host-pathogen interactions of macrophages and Candida albicans using Game Theory and dynamic optimization.

scientific article published on July 2017

Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section

scientific article published on 24 April 2010

Modular control analysis of slipping enzymes

scientific article published on 01 January 1999

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks

scientific article published on 11 January 2018

More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli

scientific article

NAD+biosynthesis and salvage - a phylogenetic perspective

scientific article published on 04 April 2012

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.

scientific article published on 19 July 2011

Optimality in the zonation of ammonia detoxification in rodent liver.

scientific article published on 5 October 2015

Pathway analysis of NAD+metabolism

article

Predicting novel pathways in genome-scale metabolic networks

scientific article published on October 2010

Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.

scientific article

Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.

scientific article published on 31 May 2019

Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts

scientific article

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'

article

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide

scientific article

Selection of human tissue-specific elementary flux modes using gene expression data

scientific article

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis

Structural robustness of metabolic networks with respect to multiple knockouts

scientific article published on 09 October 2007

TassDB2 - A comprehensive database of subtle alternative splicing events

scientific article

TassDB: a database of alternative tandem splice sites

scientific article

The Definition of Open Reading Frame Revisited

scientific article published on 20 January 2018

The definitions of metabolic control analysis revisited

scientific article published on January 1, 1992

The modelling of metabolic systems. Structure, control and optimality ⬇️

scientific article published on 01 June 1998

The tip and hidden part of the iceberg: Proteinogenic and non-proteinogenic aliphatic amino acids.

scientific article

Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis

scientific article published on 20 January 2010

Time hierarchy in enzymatic reaction chains resulting from optimality principles

scientific article published in November 1987

Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly

scientific article published on 30 January 2018

Understanding the roadmap of metabolism by pathway analysis

scientific article published on January 2007

Use of Fibonacci numbers in lipidomics - Enumerating various classes of fatty acids.

scientific article published on 10 January 2017

Use of game-theoretical methods in biochemistry and biophysics

scientific article published on April 2008

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism

article

What can we learn from Einstein and Arrhenius about the optimal flow of our blood?

scientific article published on 8 September 2013

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities

scientific article

Zonation of hepatic fat accumulation: insights from mathematical modelling of nutrient gradients and fatty acid uptake

scientific article published on August 2017

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