List of works by Mehrdad Hajibabaei

A DNA Mini-Barcoding System for Authentication of Processed Fish Products

scientific article published on 30 October 2015

A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring

scientific article

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

scientific article published in 2023

A striking new genus and species of tiger-moth (Lepidoptera: Erebidae, Arctiinae, Arctiini) from the Caribbean, with molecular and morphological analysis of its systematic placement

scientific article (publication date: 31 January 2014)

A universal DNA mini-barcode for biodiversity analysis

scientific article

Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease

scientific article

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

scientific article

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

scientific article published on May 2009

Assembling DNA barcodes. Analytical protocols

scientific article

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

scientific article

Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient.

scientific article published on 12 March 2018

Automated high throughput animal CO1 metabarcode classification.

scientific article

Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach 1

scientific article published on 29 November 2018

Benchmarking DNA barcodes: An assessment using available primate sequences

scientific article

Biological identifications through DNA barcodes: the case of the Crustacea

article

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

scientific article

Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments

scientific article published on 23 January 2021

Building freshwater macroinvertebrate DNA-barcode libraries from reference collection material: formalin preservation vs specimen age

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

scientific article published on 12 September 2019

Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples

scientific article published in 2018

Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater: Supplementary figures

Cracking Complex Taxonomy of Costa Rican Moths:AnacrusisZeller (Lepidoptera: Tortricidae: Tortricinae)

scientific article published in December 2014

Critical factors for assembling a high volume of DNA barcodes

scientific article

Cryptic species within cryptic moths: new species of Dunama Schaus (Notodontidae, Nystaleinae) in Costa Rica

scientific article published on 6 February 2013

DNA Barcodes Reveal Yet Another New Species ofVenada(Lepidoptera: Hesperiidae) in Northwestern Costa Rica

scholarly article by John Burns et al published January 2013 in Proceedings of the Entomological Society of Washington

DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica

scientific article

DNA barcodes distinguish species of tropical Lepidoptera

scientific article (publication date: 24 January 2006)

DNA barcoding of earthworms (Eisenia fetida/andrei complex) from 28 ecotoxicological test laboratories

scholarly article by Jörg Römbke et al published August 2016 in Applied Soil Ecology

DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics

scientific article

DNA damage in preserved specimens and tissue samples: a molecular assessment

scientific article

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

scientific article published on 6 October 2017

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities

scientific article published on 15 November 2017

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness

scientific article published on 26 March 2020

DNA mini-barcodes

scientific article

Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring

scientific article

Determinants of Soil Bacterial and Fungal Community Composition Toward Carbon-Use Efficiency Across Primary and Secondary Forests in a Costa Rican Conservation Area

scientific article published on 01 June 2018

Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol

scientific article published in March 2010

Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

article

Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents

scientific article published on 7 July 2015

Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics

scientific article published on 28 October 2020

Environmental DNA filtration techniques affect recovered biodiversity.

scientific article published on 16 March 2018

Environmental DNA.

scientific article published in April 2012

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

scientific article

Environmental filtering of macroinvertebrate traits influences ecosystem functioning in a large river floodplain

scientific article published in 2022

Fecal source tracking and eDNA profiling in an urban creek following an extreme rain event

scientific article published in Scientific Reports

Freshwater diatom biomonitoring through benthic kick-net metabarcoding

scientific article published on 18 November 2020

From writing to reading the encyclopedia of life

scientific article

Genomics and the challenging translation into conservation practice

scientific article published on 17 December 2014

Googling DNA sequences on the World Wide Web.

scientific article

Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes

scientific article published on 04 November 2020

Identity of the ailanthus webworm moth (Lepidoptera, Yponomeutidae), a complex of two species: evidence from DNA barcoding, morphology and ecology

scientific article

Increase in abundance and decrease in richness of soil microbes following Hurricane Otto in three primary forest types in the Northern Zone of Costa Rica

scientific article published on 30 July 2020

Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity

scientific article

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

scientific article published on 21 October 2015

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

scientific article

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

scientific article

Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morpho

scientific article

Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well

scientific article

Naphthenic Acid Mixtures from Oil Sands Process-Affected Water Enhance Differentiation of Mouse Embryonic Stem Cells and Affect Development of the Heart

scientific article

Network-Based Biomonitoring: Exploring Freshwater Food Webs With Stable Isotope Analysis and DNA Metabarcoding

scientific article published in 2019

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens

scientific article

Next-generation sequencing technologies for environmental DNA research

scientific article

Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology

scientific article

Over 2.5 million COI sequences in GenBank and growing

scientific article published in PLoS ONE

Oxynetra: Facies and DNA Barcodes Point to a New Species from Costa Rica (Hesperiidae: Pyrginae: Pyrrhopygini)

scholarly article by Nick V. Grishin et al published March 2013 in Journal of the Lepidopterists' Society

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples.

scientific article published on 18 April 2018

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets

scientific article published on 19 May 2021

Pyrosequencing for mini-barcoding of fresh and old museum specimens

scientific article

Rapid and accurate taxonomic classification of insect (class Insecta) cytochromecoxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

article by Teresita M Porter et al published March 2014 in Molecular Ecology Resources

Reading the complex skipper butterfly fauna of one tropical place

scientific article (publication date: 2011)

Reply to Garner et al.

scientific article published on 15 December 2015

Review of Apanteles sensu stricto (Hymenoptera, Braconidae, Microgastrinae) from Area de Conservación Guanacaste, northwestern Costa Rica, with keys to all described species from Mesoamerica

scientific article published on 24 February 2014

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas

scientific article published on 5 January 2016

Scaling up: A guide to high throughput genomic approaches for biodiversity analysis

scientific article published on 2 January 2018

Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae

scientific article

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

scientific article

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

scientific article

The DNA Barcode Linker

scientific article

The Red Queen’s Crown: an evolutionary arms race between coronaviruses and mammalian species reflected in positive selection of the ACE2 receptor among many species

scientific article published on 15 May 2020

The golden age of DNA metasystematics

scientific article

Toward a knowledge infrastructure for traits-based ecological risk assessment

scientific article

Using DNA-barcoded Malaise trap samples to measure impact of a geothermal energy project on the biodiversity of a Costa Rican old-growth rain forest

scientific article published on 24 June 2020

Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens

scientific article published on 21 July 2017

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA

scientific article published on 19 March 2020

Validation of COI metabarcoding primers for terrestrial arthropods

scientific article published on 07 October 2019

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators

scientific article published on 03 December 2019

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

scientific article published on 12 December 2019

Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding

scientific article (publication date: 29 October 2005)

What happens to the traditional taxonomy when a well-known tropical saturniid moth fauna is DNA barcoded?

article by Daniel H. Janzen et al published 2012 in Invertebrate Systematics

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths

scientific article

Wolbachia and DNA barcoding insects: patterns, potential, and problems

scientific article

iBarcode.org: web-based molecular biodiversity analysis

scientific article

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