List of works by Timothy Elliott Putman

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

Application of a nanoflare probe specific to a latency associated transcript for isolation of KHV latently infected cells

scientific article

Author response: Wikidata as a knowledge graph for the life sciences

Beyond Tryptophan Synthase: Identification of Genes That Contribute to Chlamydia trachomatis Survival during Gamma Interferon-Induced Persistence and Reactivation

scientific article (publication date: October 2016)

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science ⬇️

scientific article

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes

scientific article

ChlamBase: a curated model organism database for the Chlamydia research community

scientific article published on 01 January 2019

ChlamBase: a curated model organism database for the Chlamydia research community.

correction

Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations

scientific article

Demonstration of Persistent Infections and Genome Stability by Whole-Genome Sequencing of Repeat-Positive, Same-Serovar Chlamydia trachomatis Collected From the Female Genital Tract

scientific article published on 23 March 2017

High-performance web services for querying gene and variant annotation

scientific article (publication date: 6 May 2016)

Interrogating Genes That Mediate Chlamydia trachomatis Survival in Cell Culture Using Conditional Mutants and Recombination

scientific article

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023

Linking Wikidata to the Rest of the Semantic Web ⬇️

scientific article (publication date: 19 February 2017)

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

article

Opportunities and challenges presented by Wikidata in the context of biocuration ⬇️

scientific article (publication date: 29 November 2016)

Resistance to a novel antichlamydial compound is mediated through mutations in Chlamydia trachomatis secY.

scientific article

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata ⬇️

scientific article

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article

Wikidata as a knowledge graph for the life sciences ⬇️

scientific article published on 17 March 2020

Wikidata as a semantic framework for the Gene Wiki initiative ⬇️

scientific article

Wikidata as a semantic framework for the Gene Wiki initiative

bioRxiv preprint

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