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List of works by Jong Bhak

A proposal for the revision of molecular boundary typology

scientific article published on October 2010

A protein domain interaction interface database: InterPare

scientific article

A public resource facilitating clinical use of genomes

scientific article (publication date: 24 July 2012)

Alpha-glucosidase folding during urea denaturation: enzyme kinetics and computational prediction

scientific article published on 6 May 2009

An adaptive detection method for fetal chromosomal aneuploidy using cell-free DNA from 447 Korean women

scientific article

An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

scientific article

An integrated Korean biodiversity and genetic information retrieval system

scientific article

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases

scientific article

Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans

scientific article

Architecture of basic building blocks in protein and domain structural interaction networks

scientific article published on 21 December 2004

Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries.

scientific article

BetaDock: Shape-Priority Docking Method Based on Beta-Complex ⬇️

scientific article published on August 1, 2011

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources

scientific article

Brca2 abrogation engages with the alternative lengthening of telomeres via break-induced replication

scientific article published on 12 March 2019

COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System

scientific article

CONSORF: a consensus prediction system for prokaryotic coding sequences

scientific article published on 31 October 2007

Chromosome-Level Genome Assembly of the Butter Clam <i>Saxidomus purpuratus</i>

scientific article published in 2022

Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

scientific article published on 01 December 2019

Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment

scientific article published on 01 December 2019

Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species <i>Dendrophyllia cribrosa</i> Near Dokdo Islands in the East Sea

scientific article published in 2022

Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).

scientific article published on 24 May 2005

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly

scientific article

Comparison of exercise electrocardiography and magnetocardiography for detection of coronary artery disease using ST-segment fluctuation score

scientific article published on 01 January 2019

Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy

scientific article

Complete genome sequence and bioinformatics analysis of nine Egyptian females with clinical information from different geographic regions in Egypt

scientific article published on 27 October 2020

Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers

scientific article published on 04 June 2013

Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

scientific article published on 9 October 2017

Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein

scientific article published in June 2008

DNA microarray analyses and interactomic predictions for atopic dermatitis

scientific article published on 13 May 2009

De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis

scientific article

Decoding a highly mixed Kazakh genome

scientific article published on 19 February 2020

Defining the mutation signatures of DNA polymerase θ in cancer genomes

scientific article published on 27 August 2020

Depression and suicide risk prediction models using blood-derived multi-omics data

scientific article published on 17 October 2019

Detection of association between periodontitis and polymorphisms of IL-1β + 3954 and TNF-α -863 in the Korean population after controlling for confounding risk factors

scientific article published on 03 July 2020

Differential evolutionary rates of neuronal transcriptome in Aplysia kurodai and Aplysia californica as a tool for gene mining

scientific article

Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses

scientific article

Efficient mutation screening for cervical cancers from circulating tumor DNA in blood

scientific article published on 27 July 2020

Ethnically relevant consensus Korean reference genome towards personal reference genomes

scientific article (publication date: 6 September 2016)

Functional annotation and analysis of Korean patented biological sequences using bioinformatics

scientific article published on April 2006

GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data

scientific article

Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups

scientific article

Gene flow between the Korean peninsula and its neighboring countries ⬇️

scientific article (publication date: 29 July 2010)

Genome-wide analysis of DNA methylation before-and after exercise in the thoroughbred horse with MeDIP-Seq

scientific article

Genome-wide analysis of DNA methylation patterns in horse

scientific article

Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago

scientific article

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

scientific article published on 09 October 2020

Genomic analysis reveals secondary glioblastoma after radiotherapy in a subset of recurrent medulloblastomas.

scientific article published on 11 April 2018

Genomic distribution of simple sequence repeats in Brassica rapa

scientific article published on 01 June 2007

Genomic legacy of the African cheetah, Acinonyx jubatus

scientific article

Genomic profile analysis of diffuse-type gastric cancers

scientific article

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia.

scientific article published on 30 January 2018

Gevab: a prototype genome variation analysis browsing server

scientific article

Grading system for periodontitis by analyzing levels of periodontal pathogens in saliva

scientific article published in PLoS ONE

HEpD: a database describing epigenetic differences between Thoroughbred and Jeju horses

scientific article published on 28 January 2015

Identification and characterization of microRNAs in normal equine tissues by Next Generation Sequencing

scientific article

Impact of transcriptional properties on essentiality and evolutionary rate

scientific article published on 22 October 2006

Insights into the evolution of longevity from the bowhead whale genome ⬇️

scientific article

Investigation of Hanwoo-specific structural variations using whole-genome sequencing data

scientific article published on 08 December 2018

Kinetics of Zn(2+)-induced brain type creatine kinase unfolding and aggregation

scientific article published on 11 March 2009

KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses.

scientific article published on 4 April 2018

Korea Barcode of Life Database System (KBOL)

Korean Genome Project: 1094 Korean personal genomes with clinical information

scientific article published on 27 May 2020

Liverome: a curated database of liver cancer-related gene signatures with self-contained context information ⬇️

scientific article published on November 30, 2011

Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information

scientific article published on July 2006

Low budget analysis of Direct-To-Consumer genomic testing familial data

scientific article (publication date: 2012)

Low budget analysis of Direct-To-Consumer genomic testing familial data

article published in 2012

MBRS-25. GENOMIC ANALYSES REVEALED RADIATION-INDUCED GLIOBLASTOMA IN A SUBSET OF RECURRENT MEDULLOBLASTOMAS.

scientific article published on 22 June 2018

Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease

scientific article published on 01 January 2018

Mapping human genetic diversity in Asia

scientific article

MassNet: a functional annotation service for protein mass spectrometry data

scientific article

MetaBase—the wiki-database of biological databases

scientific article

Minke whale genome and aquatic adaptation in cetaceans

scientific article

MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis

scientific article

MitoVariome: a variome database of human mitochondrial DNA.

scientific article

Mutational hotspots in the mitochondrial genome of lung cancer ⬇️

scientific article published on February 18, 2011

Myotis rufoniger genome sequence and analyses: M. rufoniger's genomic feature and the decreasing effective population size of Myotis bats

scientific article

New lung cancer panel for high-throughput targeted resequencing

scientific article published on 30 June 2014

PDBWiki: added value through community annotation of the Protein Data Bank

scientific article

PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs

scientific article

PSIbase: a database of Protein Structural Interactome map (PSIMAP).

scientific article published on 3 March 2005

PanSNPdb: the Pan-Asian SNP genotyping database

scientific article (publication date: 2011)

Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.

scientific article published on 11 April 2013

Perspectives provided by leopard and other cat genomes: how diet determined the evolutionary history of carnivores, omnivores, and herbivores

scientific article published on 02 January 2016

Planning the human variome project: the Spain report.

scientific article published in April 2009

Pocket extraction on proteins via the Voronoi diagram of spheres

scientific article published on 7 October 2007

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service

scientific article

Prediction and evaluation of protein-protein interaction in keratinocyte differentiation

scientific article published on 21 October 2008

Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects

scientific article published on 20 April 2015

Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses

scientific article published on 20 January 2009

Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection

scientific article

Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics

scientific article published on March 2008

PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440.

scientific article

RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney

scientific article published on 03 May 2016

Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles

scientific article published on 29 August 2019

Regional TMPRSS2 V197M Allele Frequencies Are Correlated with COVID-19 Case Fatality Rates

scientific article

SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma

scientific article

SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions

scientific article

Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa

scientific article published on 21 April 2006

Sequencing and analysis of the whole genome of Indian Gujarati male

scientific article published on 9 February 2018

Short-term calorie restriction ameliorates genomewide, age-related alterations in DNA methylation.

scientific article

Sphericity of a protein via the beta-complex

scientific article published on 15 January 2010

Structural analysis and inhibitory kinetics of brain type creatine kinase by sodium dodecyl sulfate

scientific article published on 13 December 2008

SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803

scientific article

Systematic cyanobacterial membrane proteome analysis by combining acid hydrolysis and digestive enzymes with nano-liquid chromatography-Fourier transform mass spectrometry

scientific article published on 26 November 2009

The Draft Genome of an Octocoral, Dendronephthya gigantea

scientific article published in 2019

The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax

scientific article published on 01 February 2019

The Korean Bird Information System (KBIS) through open and public participation

scientific article (publication date: 3 December 2009)

The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions

scientific article

The complete mitochondrial genome of a Dokdo shrimp, <i>Lebbeus groenlandicus</i>

scientific article published on 21 November 2019

The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction

scientific article published in December 2008

The effect of trifluoroethanol on tyrosinase activity and conformation: inhibition kinetics and computational simulations

scientific article published on 24 August 2009

The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation

scientific article published on 18 November 2008

The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform

scientific article

The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group

scientific article

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

scientific article published on 21 October 2015

The genetic basis of white tigers

scientific article

The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation

scientific article published on 29 March 2019

The origin and composition of Korean ethnicity analyzed by ancient and present-day genome sequences

scientific article published on 27 March 2020

The tiger genome and comparative analysis with lion and snow leopard genomes

scientific article

The whale shark genome reveals how genomic and physiological properties scale with body size

scientific article published on 04 August 2020

Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai

scholarly article

Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications

scientific article

Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity

scientific article published on 01 January 2020

Whole genome comparison of donor and cloned dogs.

scientific article published on 21 October 2013

Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

scientific article

Whole genome sequencing and bioinformatics analysis of two Egyptian genomes

article

Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan

scientific article

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq ⬇️

scientific article published on September 12, 2012

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

scientific article (publication date: 21 December 2010)

Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant

scientific article published on 01 July 2020

iAnn: an event sharing platform for the life sciences

scientific article published on 05 June 2013

ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database

scientific article published on 01 December 2009

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