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List of works by Fabien Burki

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction

scientific article published on 15 November 2017

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

scientific article

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa

scientific article published in August 2006

Ascetosporea

scientific article published on 01 January 2019

Automated Removal of Non-homologous Sequence Stretches with PREQUAL

scientific article published on 01 January 2021

Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux

scientific article

Collodictyon--an ancient lineage in the tree of eukaryotes

scientific article

Cthulhu Macrofasciculumque n. g., n. sp. and Cthylla Microfasciculumque n. g., n. sp., a newly identified lineage of parabasalian termite symbionts

scientific article published on 18 March 2013

Dual targeting of aminoacyl-tRNA synthetases to the mitochondrion and complex plastid in chlorarachniophytes

scientific article published on 4 October 2012

Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates

scientific article published on 02 December 2013

Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts

scientific article

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

scientific article

Evolutionary Origins of Rhizarian Parasites

scientific article published on 16 December 2015

Evolutionary position of breviate amoebae and the primary eukaryote divergence

scientific article

Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives

scientific article

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont

scientific article published on 13 June 2016

Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites

scientific article

Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga

scientific article

Global patterns and rates of habitat transitions across the eukaryotic tree of life

scientific article published in 2022

Identification of a new gregarine parasite associated with mass mortality events of freshwater pearl mussels (<i>Margaritifera margaritifera</i>) in Sweden

scientific article published on 13 March 2024

Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium

scientific article

Intragenomic spread of plastid-targeting presequences in the coccolithophore Emiliania huxleyi

scientific article published on 30 March 2012

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

scientific article

Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity

scientific article published on 29 November 2019

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.

scientific article published on 27 December 2016

Mitochondrial Evolution: Going, Going, Gone

scientific article published on 01 May 2016

Molecular characterization of parabasalian symbionts Coronympha clevelandii and Trichonympha subquasilla from the Hawaiian lowland tree termite Incisitermes immigrans

scientific article published on 5 February 2013

Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts

scientific article

New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life

scientific article published on 01 April 2019

New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life

article published in 2018

Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga

scientific article published on 6 April 2011

On the origin of TSAR: morphology, diversity and phylogeny of Telonemia

scientific article published on 16 March 2022

PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences

scientific article published on 01 November 2018

Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding

scientific article published on 04 June 2020

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships ⬇️

scientific article published on 06 August 2021

Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA

scientific article published on 01 September 2002

Phylogenomics of the Intracellular Parasite Mikrocytos mackini Reveals Evidence for a Mitosome in Rhizaria

Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria

scientific article published on 25 July 2013

Phylogenomics reshuffles the eukaryotic supergroups

scientific article published in 2007

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

scientific article

Phylogenomics supports the monophyly of the Cercozoa

Phylogenomics supports the monophyly of the Cercozoa

scientific article published in January 2019

Predatory colponemids are the sister group to all other alveolates

scientific article published on 20 April 2020

Progress towards the Tree of Eukaryotes

scientific article published on 01 August 2019

Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin

scientific article published on 16 May 2012

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes ⬇️

scientific article published on 01 January 2019

Rhizaria

scientific article published on 01 February 2014

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates

scientific article published on 10 October 2017

Single-cell transcriptomics for microbial eukaryotes

scientific article

Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts

scientific article published in 2012

The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape

scientific article

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The New Tree of Eukaryotes

scientific article published on 09 October 2019

The Revised Classification of Eukaryotes

taxonomic paper

The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins ⬇️

scientific article published on June 7, 2012

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

scientific article

Untangling the phylogeny of amoeboid protists

scientific article (publication date: 2009)

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