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List of works by Judith Berman

A Chlamydomonas protein that binds single-stranded G-strand telomere DNA.

scientific article published on August 1994

A class of single-stranded telomeric DNA-binding proteins required for Rap1p localization in yeast nuclei

scientific article

A forkhead transcription factor is important for true hyphal as well as yeast morphogenesis in Candida albicans

scientific article

A human-curated annotation of the Candida albicans genome

scientific article

A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans

scientific article

A tetraploid intermediate precedes aneuploid formation in yeasts exposed to fluconazole

scientific article (publication date: March 2014)

A yeast telomere binding activity binds to two related telomere sequence motifs and is indistinguishable from RAP1.

scientific article

Acquisition of aneuploidy provides increased fitness during the evolution of antifungal drug resistance

scientific article

Adaptation to Fluconazole via Aneuploidy Enables Cross-Adaptation to Amphotericin B and Flucytosine in Cryptococcus neoformans

scientific article published on 29 September 2021

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans.

scientific article published on July 2017

Adaptive Resistance Mutations at Suprainhibitory Concentrations Independent of SOS Mutagenesis

scientific article published on 01 September 2021

Additional cassettes for epitope and fluorescent fusion proteins in Candida albicans

scientific article published on July 2009

An agarose gel electrophoresis assay for the detection of DNA-binding activities in yeast cell extracts.

scientific article

An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1.

scientific article

An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function

scientific article published on 04 May 2022

Analysis of protein function in clinical C. albicans isolates

scientific article published on 9 July 2012

Aneuploid chromosomes are highly unstable during DNA transformation of Candida albicans

scientific article published on 21 August 2009

Aneuploidy Enables Cross-Adaptation to Unrelated Drugs

scientific article published on 01 August 2019

Aneuploidy Underlies Tolerance and Cross-Tolerance to Drugs in Candida parapsilosis

scientific article published on 06 October 2021

Aneuploidy and isochromosome formation in drug-resistant Candida albicans

scientific article published on July 2006

Antifungal tolerance is a subpopulation effect distinct from resistance and is associated with persistent candidemia.

scientific article

Assessment of Candida auris Response to Antifungal Drugs Using Time–Kill Assays and an Animal Model

scientific article published on 4 October 2017

Author Correction: Drug resistance and tolerance in fungi

scientific article published on 29 June 2020

Autonomously Replicating Linear Plasmids That Facilitate the Analysis of Replication Origin Function in

scientific article published on 06 March 2019

CAC3(MSI1) suppression of RAS2(G19V) is independent of chromatin assembly factor I and mediated by NPR1

scientific article

CaMtw1, a member of the evolutionarily conserved Mis12 kinetochore protein family, is required for efficient inner kinetochore assembly in the pathogenic yeast Candida albicans

scientific article

Candida Albicans: a molecular revolution built on lessons from budding yeast

scientific article

Candida albicans

scientific article published on 01 August 2012

Candida albicans Genetic Background Influences Mean and Heterogeneity of Drug Responses and Genome Stability during Evolution in Fluconazole

scientific article published on 24 June 2020

Candida albicans INT1-Induced Filamentation in Saccharomyces cerevisiae Depends on Sla2p

scientific article published in April 2001

Candida albicans INT1-induced filamentation in Saccharomyces cerevisiae depends on Sla2p

scientific article published on February 2001

Candida albicans Int1p interacts with the septin ring in yeast and hyphal cells

scientific article

Candida albicans hyphae have a Spitzenkörper that is distinct from the polarisome found in yeast and pseudohyphae

scientific article published in July 2005

Candida albicans morphology and dendritic cell subsets determine T helper cell differentiation

scientific article

Candida albicans repetitive elements display epigenetic diversity and plasticity

scientific article published on 14 March 2016

Cassettes for PCR-mediated construction of green, yellow, and cyan fluorescent protein fusions in Candida albicans

scientific article published on 01 June 2001

Cassettes for the PCR-mediated construction of regulatable alleles in Candida albicans

scientific article

Cell-cycle-coupled structural oscillation of centromeric nucleosomes in yeast

scientific article published on July 2012

Chlamydomonas reinhardtii telomere repeats form unstable structures involving guanine-guanine base pairs

scientific article published on January 1992

Chlamydomonas telomere sequences are A+T-rich but contain three consecutive G-C base pairs

scientific article

Chromatin Profiling of the Repetitive and Nonrepetitive Genomes of the Human Fungal Pathogen Candida albicans

scientific article published on 23 July 2019

Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci

scientific article

Combining Colistin and Fluconazole Synergistically Increases Fungal Membrane Permeability and Antifungal Cidality

scientific article published on 20 January 2021

Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program

scientific article

Comparative genome hybridization reveals widespread aneuploidy in Candida albicans laboratory strains.

scientific article

Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality

scientific article published on 17 July 2020

Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase.

scientific article published on 28 April 2011

Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase.

scientific article

Dancing genomes: fungal nuclear positioning

scientific article

Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells

scientific article published on 21 August 2018

Diversity of acquired adaptation to fluconazole is influenced by genetic background and ancestral fitness in Candida albicans

Does stress induce (para)sex? Implications for Candida albicans evolution

scientific article published on 22 February 2012

Drug resistance and tolerance in fungi

scientific article published on 11 February 2020

Dynamic ploidy changes drive fluconazole resistance in human cryptococcal meningitis

scientific article published on 28 January 2019

Dynein-dependent nuclear dynamics affect morphogenesis in Candida albicans by means of the Bub2p spindle checkpoint

scientific article

Effect of INT1 Gene on Candida albicans Murine Intestinal Colonization

article

Efficient and rapid identification of Candida albicans allelic status using SNP-RFLP.

scientific article published on 22 June 2009

Enhancement of telomere-plasmid segregation by the X-telomere associated sequence in Saccharomyces cerevisiae involves SIR2, SIR3, SIR4 and ABF1.

scientific article

Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase

scientific article

Erratum: Corrigendum: The ‘obligate diploid’ Candida albicans forms mating-competent haploids

scientific article published in Nature

Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris

scientific article published on 25 August 2020

Evolution in Candida albicans populations during a single passage through a mouse host

scientific article published on 04 May 2009

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

scientific article

Evolutionary dynamics of Candida albicans during in vitro evolution

scientific article published on 2 September 2011

Evolutionary genomics: When abnormality is beneficial

scientific article published in November 2010

Exposure to the oral host niche yields rapid phenotypic and genotypic diversification inCandida albicans

Expression of a nitrogen-fixation gene encoding a nitrogenase subunit in yeast

article

Expression of nitrogen fixation genes in foreign hosts. Assembly of nitrogenase Fe protein in Escherichia coli and in yeast.

scientific article

Filamentous growth of Saccharomyces cerevisiae is regulated by manganese

scientific article published on 01 July 2000

Flexibility of centromere and kinetochore structures

scientific article

Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes

scientific article

Functional diversification accompanies gene family expansion of MED2 homologs in Candida albicans.

scientific article published on 9 April 2018

Gbp1p, a protein with RNA recognition motifs, binds single-stranded telomeric DNA and changes its binding specificity upon dimerization

scientific article

Gene Essentiality Analyzed by Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of

article

Generation of Fluorescent Protein Fusions in Candida Species

scientific article published on 4 March 2017

Genetic and phenotypic intra-species variation in Candida albicans

scientific article published in March 2015

Genomic Plasticity of the Human Fungal Pathogen Candida albicans

scientific article

Genotypic evolution of azole resistance mechanisms in sequential Candida albicans isolates

scientific article

Growth and development: eukaryotes

scientific article published on 2 November 2009

Haplotype mapping of a diploid non-meiotic organism using existing and induced aneuploidies

scientific article

Haplotyping a Non-meiotic Diploid Fungal Pathogen Using Induced Aneuploidies and SNP/CGH Microarray Analysis

scientific article

Heteroresistance to Fluconazole Is a Continuously Distributed Phenotype among Candida glabrata Clinical Strains Associated with In Vivo Persistence

scientific article published on 02 August 2016

High frame-rate resolution of cell division during Candida albicans filamentation

scientific article

High-Resolution SNP/CGH Microarrays Reveal the Accumulation of Loss of Heterozygosity in Commonly Used Candida albicans Strains

scientific article published on December 2011

Identification and Rapid Antifungal Susceptibility Testing Against Echinocandins by MALDI-TOF MS

scholarly article by Mansoureh Vatanshenassan et al published 2019 in Frontiers in cellular and infection microbiology

Identification of a novel allele of SIR3 defective in the maintenance, but not the establishment, of silencing in Saccharomyces cerevisiae

scientific article

Identification of a telomere-binding activity from yeast

scientific article published on June 1986

Insertion of telomere repeat sequence decreases plasmid DNA condensation by cobalt (III) hexaammine

scientific article

Linkage of adhesion, filamentous growth, and virulence in Candida albicans to a single gene, INT1.

scientific article published in February 1998

Localizing Antifungal Drugs to the Correct Organelle Can Markedly Enhance their Efficacy

scientific article published on 25 March 2018

Low dosage of histone H4 leads to growth defects and morphological changes in Candida albicans

scientific article

MEC3, MEC1, and DDC2 are essential components of a telomere checkpoint pathway required for cell cycle arrest during senescence in Saccharomyces cerevisiae

scientific article

Maize Transposable Elements Ac/Ds as Insertion Mutagenesis Tools in Candida albicans

scientific article

Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance

scientific article published on 21 March 2022

Microtubules in Candida albicans hyphae drive nuclear dynamics and connect cell cycle progression to morphogenesis

scientific article published on October 2005

Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres

scientific article published on 12 May 2008

Molecular genetic and genomic approaches to the study of medically important fungi

scientific article

Monopolin recruits condensin to organize centromere DNA and repetitive DNA sequences

scientific article published on 24 July 2013

Morphogenesis and cell cycle progression in Candida albicans

scientific article published on 20 October 2006

Multidrug-Resistant Candida haemulonii and C. auris, Tel Aviv, Israel

scientific article published on February 2017

Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome

scientific article

Neocentromeres and epigenetically inherited features of centromeres

scientific article

Neocentromeres form efficiently at multiple possible loci in Candida albicans.

scientific article

Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres

scientific article published on 02 September 2014

Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans

scientific article published on 18 May 2015

Phenotypic Consequences of a Spontaneous Loss of Heterozygosity in a Common Laboratory Strain of Candida albicans

scientific article published on 20 May 2016

Phenotypic and genotypic characteristics of Candida albicans isolates from bloodstream and mucosal infections.

scientific article

Physical limits on kinesin-5-mediated chromosome congression in the smallest mitotic spindles

scientific article

Ploidy dynamics and evolvability in fungi

scientific article published on December 2016

Ploidy plasticity: a rapid and reversible strategy for adaptation to stress

scientific article published on 4 March 2016

Ploidy tug-of-war: Evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen.

scientific article

Ploidy tug-of-war: evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen

Polyploid titan cells produce haploid and aneuploid progeny to promote stress adaptation

scientific article

Predicting microbial growth in a mixed culture from growth curve data

scientific article published on 28 June 2019

Predicting microbial relative growth in a mixed culture from growth curve data

article

Promoter mutations that allow nifA-independent expression of the nitrogen fixation nifHDKY operon

scientific article published on October 1983

RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivo

scientific article

Rad52 function prevents chromosome loss and truncation in Candida albicans.

scientific article published on 27 January 2011

Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in Candida albicans

scientific article published on 03 May 2018

Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity

scientific article

Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans

scientific article published on 8 May 2015

Real-Time Imaging of the Azole Class of Antifungal Drugs in Live Candida Cells.

scientific article

Response from Gale et al

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

scientific article published in Science

SLA2 mutations cause SWE1-mediated cell cycle phenotypes in Candida albicans and Saccharomyces cerevisiae

scientific article

Selection of Candida albicans trisomy during oropharyngeal infection results in a commensal-like phenotype.

scientific article

Shift and adapt: the costs and benefits of karyotype variations

scientific article

Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans

scientific article published on 10 January 2013

Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2.

scientific article

Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans.

scientific article published on July 2016

Skin-resident murine dendritic cell subsets promote distinct and opposing antigen-specific T helper cell responses

scientific article

Stress alters rates and types of loss of heterozygosity in Candida albicans

scientific article

TEL+CEN antagonism on plasmids involves telomere repeat sequences tracts and gene products that interact with chromosomal telomeres

article

TEL+CEN antagonism on plasmids involves telomere repeat sequences tracts and gene products that interact with chromosomal telomeres

scientific article published on 01 July 1994

Tackling the emerging threat of antifungal resistance to human health

scientific article published in September 2022

Targeting the adaptability of heterogeneous aneuploids

scientific article

Telomere cap components influence the rate of senescence in telomerase-deficient yeast cells

scientific article

Telomere length regulation and telomeric chromatin require the nonsense-mediated mRNA decay pathway

scientific article published in October 1998

Telomeric ORFS in Candida albicans: does mediator tail wag the yeast?

scientific article

Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits.

scientific article

The 'obligate diploid' Candida albicans forms mating-competent haploids

scientific article published on 30 January 2013

The distinct morphogenic states of Candida albicans

scientific article

The evolution of drug resistance in clinical isolates of Candida albicans

scientific article

The future of fungi: threats and opportunities

scientific article published on 4 November 2022

The mitotic cyclins Clb2p and Clb4p affect morphogenesis in Candida albicans

scientific article

The parasexual cycle in Candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains

scientific article

The pattern and evolution of yeast promoter bendability

scientific article published on 6 April 2007

The requirement for the Dam1 complex is dependent upon the number of kinetochore proteins and microtubules

scientific article published on 5 May 2011

The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization, and expression features

scientific article

Transcript profiles of Candida albicans cortical actin patch mutants reflect their cellular defects: contribution of the Hog1p and Mkc1p signaling pathways

scientific article

Transcriptional profiling in Candida albicans reveals new adaptive responses to extracellular pH and functions for Rim101p

scientific article

Vectors for expressing T7 epitope- and His6 affinity-tagged fusion proteins in S. cerevisiae.

scientific article published in May 1998

YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

scientific article

Yeast Ty1 retrotransposition is stimulated by a synergistic interaction between mutations in chromatin assembly factor I and histone regulatory proteins

scientific article

Yeast chromatin assembly complex 1 protein excludes nonacetylatable forms of histone H4 from chromatin and the nucleus

scientific article published on December 2004

Yeast telomere repeat sequence (TRS) improves circular plasmid segregation, and TRS plasmid segregation involves the RAP1 gene product

scientific article published on May 1992

diskImageR: quantification of resistance and tolerance to antimicrobial drugs using disk diffusion assays

scientific article published on 27 April 2016

mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae

scientific article

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