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List of works by Robert C. Thomson

A critical appraisal of the use of microRNA data in phylogenetics

scientific article

A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins ⬇️

scientific article published in 2021

A time-calibrated phylogeny of the butterfly tribe Melitaeini

scientific article published on 18 June 2014

Assessing the performance of DNA barcoding using posterior predictive simulations.

scientific article

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles

scientific article

Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses

scientific article

Biomechanical trade-offs bias rates of evolution in the feeding apparatus of fishes

scientific article published on 12 October 2011

Complex patterns of hybridization and introgression across evolutionary timescales in Mexican whiptail lizards (Aspidoscelis)

scientific article published on 15 December 2018

Corrigendum to "Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity" [Mol. Phylogen. Evol. 106 (2017) 241-253].

scientific article published on 2 November 2016

Delimiting species in recent radiations

scientific article

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

scientific article

Distribution and Abundance of Invasive Red-Eared Sliders (Trachemys scripta elegans) in California's Sacramento River Basin and Possible Impacts on Native Western Pond Turtles (Emys marmorata)

article

Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life

scientific article published on 12 November 2009

Genomic differentiation in an endemic Philippine genus (Aves: Sarcophanops) owing to geographical isolation on recently disassociated islands

scientific article (publication date: December 2020)

Habitat Features Determine the Basking Distribution of Introduced Red-Eared Sliders and Native Western Pond Turtles

article

Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies.

scientific article

Misleading phylogenetic inferences based on single-exemplar sampling in the turtle genus Pseudemys

scientific article published on 12 April 2013

Model-based species delimitation: are coalescent species reproductively isolated?

scientific article published on 05 November 2019

Molecular phylogeny and divergence of the Map Turtles (Emydidae: Graptemys).

scientific article published on 11 December 2017

Multilocus phylogeny of the New-World mud turtles (Kinosternidae) supports the traditional classification of the group

scientific article

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California

scientific article

P3: Phylogenetic Posterior Prediction in RevBayes.

scientific article published on 10 November 2017

Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life

scientific article published on 02 May 2020

Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity

scientific article

Phylogeny and temporal diversification of the New World pond turtles (Emydidae).

scientific article published on 8 July 2016

Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation

scientific article published on 13 February 2019

Rapid progress on the vertebrate tree of life

scientific article

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

scientific article

Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora.

scientific article

Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape

scientific article published on 6 April 2015

Testing avian, squamate, and mammalian nuclear markers for cross amplification in turtles

article

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle.

scientific article

The behavior of Metropolis-coupled Markov chains when sampling rugged phylogenetic distributions.

scientific article published on 15 February 2018

The origin of tiger salamander (Ambystoma tigrinum) populations in California, Oregon, and Nevada: introductions or relicts?

article

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological?

scientific article published on 01 September 2018

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