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List of works by Jonathan F. Wendel

A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).

scientific article

A Calmodulin-Like Gene (<i>GbCML7</i>) for Fiber Strength and Yield Improvement Identified by Resequencing Core Accessions of a Pedigree in <i>Gossypium barbadense</i>

scientific article published on 01 January 2021

A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in Gossypium raimondii

scientific article published on 01 July 2015

A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

scientific article published on 01 January 2019

A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae)

scientific article

A New Species of Micraira (Poaceae: Micraireae) from northern Western Australia ⬇️

scientific article

A Phylogeny of the Grass Family (Poaceae) Based on ndhF Sequence Data

scholarly article by Lynn G. Clark et al published October 1995 in Systematic Botany

A Transcriptome Profile for Developing Seed of Polyploid Cotton

scientific article published on 01 March 2015

A bountiful harvest: genomic insights into crop domestication phenotypes

scientific article

A draft physical map of a D-genome cotton species (Gossypium raimondii)

scientific article

A global assembly of cotton ESTs.

scientific article

A majority of cotton genes are expressed in single-celled fiber

scientific article published on 12 September 2007

A novel approach for characterizing expression levels of genes duplicated by polyploidy

scientific article

A phylogenetic analysis of indel dynamics in the cotton genus

scientific article

A re-evaluation of the homoploid hybrid origin of Aegilops tauschii, the donor of the wheat D-subgenome

scientific article

Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids

scientific article

Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence

scientific article published on March 2014

Candidate Gene Identification of Flowering Time Genes in Cotton

scientific article published on 01 July 2015

CenH3 evolution in diploids and polyploids of three angiosperm genera

scientific article published on 30 December 2014

Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species

scientific article

Cis-trans controls and regulatory novelty accompanying allopolyploidization

scientific article published on 10 November 2018

Co-evolution in hybrid genomes: nuclear-encoded rubisco small subunits and their plastid-targeting translocons accompanying sequential allopolyploidy events in Triticum

scientific article published on 30 June 2020

Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton

scientific article published on 01 August 2021

Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome

scientific article

Comparative genomics of an unusual biogeographic disjunction in the cotton tribe (Gossypieae) yields insights into genome downsizing

scientific article published on 27 November 2017

Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species

scientific article

Congruence and Consensus in the Cotton Tribe (Malvaceae)

scientific article published in 1997

Conservation and Divergence in Duplicated Fiber Coexpression Networks Accompanying Domestication of the Polyploid Gossypium hirsutum L

scientific article published on 25 June 2020

Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology

scientific article published on August 2014

Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3.

scientific article

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton

scientific article published on 5 March 2009

Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation

scientific article published on 21 February 2018

Crop plants as models for understanding plant adaptation and diversification

scientific article published on August 2013

Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives.

scientific article

Cryptic repeated genomic recombination during speciation in Gossypium gossypioides

scientific article published in November 2003

Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii

scientific article published on 01 February 2019

Cytonuclear evolution of rubisco in four allopolyploid lineages

scientific article

Cytonuclear responses to genome doubling

scientific article published on 01 September 2017

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

scientific article published on 30 April 2019

De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri

scientific article published on 07 October 2019

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes

scientific article published on 01 February 2022

Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium).

scientific article published in May 2002

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

scientific article published in October 2006

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

scientific article (publication date: 3 February 2017)

Domestication over Speciation in Allopolyploid Cotton Species: A Stronger Transcriptomic Pull

scientific article published in 2023

Doubling down on genomes: polyploidy and crop plants

scientific article

Drivers and dynamics of diversity in plant genomes

scientific article published in April 2014

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton ⬇️

scientific article published on July 6, 2012

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

scientific article

Epigenetic phenomena and the evolution of plant allopolyploids ⬇️

scientific article published on December 1, 2003

Epigenetics and plant evolution

scientific article

Evolution of DMSP (dimethylsulfoniopropionate) biosynthesis pathway: Origin and phylogenetic distribution in polyploid Spartina (Poaceae, Chloridoideae).

scientific article

Evolution of Plant Phenotypes, from Genomes to Traits

scientific article published on 11 February 2016

Evolution of plant genome architecture

scientific article

Evolution of the BBAA component of bread wheat during its history at the allohexaploid level

scientific article published on 02 July 2014

Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds.

scientific article published on 6 January 2017

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

scientific article published in 2022

Evolutionary genetics of genome merger and doubling in plants

scientific article published on January 2008

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

scientific article published on 19 November 2009

Feast and famine in plant genomes

scientific article published on 01 May 2002

Gene Expression Dominance in Allopolyploids: Hypotheses and Models

scientific article published on 9 February 2018

Gene duplication and evolutionary novelty in plants

scientific article

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication ⬇️

scientific article published on November 15, 2010

Gene-body CG methylation and divergent expression of duplicate genes in rice

scientific article

Gene-expression novelty in allopolyploid cotton: a proteomic perspective

scientific article published on 2 March 2015

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

scholarly article

Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.).

scientific article published on 06 February 2020

Genetic Divergence Within the Genus Liriodendron (Magnoliaceae)

scientific article published in 1983

Genetic Diversity and Origin of the Hawaiian Islands Cotton, Gossypium tomentosum

scientific article (publication date: November 1992)

Genetic Diversity in Gossypium hirsutum and the Origin of Upland Cotton

scientific article published in 1992

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae).

scientific article published in April 2005

Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L.

scientific article

Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton

scientific article published on 11 October 2005

Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum

scientific article published on 26 July 2005

Genome evolution in polyploids

2000 scientific article

Genome evolution in polyploids

scientific article published in 2000

Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium

scientific article published on 24 August 2020

Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies

scientific article published on 27 February 2014

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

scientific article published on 20 April 2020

Genomic expression dominance in allopolyploids

scientific article

Genomically biased accumulation of seed storage proteins in allopolyploid cotton.

scientific article published on 6 September 2011

Genomics of Evolutionary Novelty in Hybrids and Polyploids

scientific article published on 28 July 2020

Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense

scientific article published in September 2008

Gossypium anapoides(Malvaceae), a New Species from Western Australia

article

Homoeologous Exchanges, Segmental Allopolyploidy, and Polyploid Genome Evolution

scientific article published on 28 August 2020

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

scientific article published on 27 March 2020

Homoeologous nonreciprocal recombination in polyploid cotton

scientific article published on 19 November 2009

Incongruent patterns of local and global genome size evolution in cotton

scientific article published on 15 July 2004

Independent Domestication of Two Old World Cotton Species

scientific article published on 11 June 2016

Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.).

scientific article

Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis

scientific article published on 29 March 2016

Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing

scientific article published on 01 January 2019

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

scientific article published on 03 October 2013

Intergenomic gene transfer in diploid and allopolyploid Gossypium

scientific article published on 12 November 2019

Intron size and genome size in plants

scientific article published in December 2002

Little evidence for homoeologous gene conversion and homoeologous exchange events in <i>Gossypium</i> allopolyploids

MOLECULAR EVIDENCE FOR HOMOPLOID RETICULATE EVOLUTION AMONG AUSTRALIAN SPECIES OF GOSSYPIUM.

scientific article published in May 1991

Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development

scientific article

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

scientific article published on 25 April 2007

Molecular Systematics of Australian Gossypium Section Grandicalyx (Malvaceae)

scholarly article by Tosak Seelanan et al published April 1999 in Systematic Botany

Molecular evolution of the plastid genome during diversification of the cotton genus

scientific article published on 13 April 2017

Multiple patterns of rDNA evolution following polyploidy in Oryza

scientific article published on 24 October 2009

Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops-Triticum complex

scientific article published on 6 July 2015

Novel patterns of gene expression in polyploid plants

scientific article

Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid

scientific article published on 15 September 2004

PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS

scientific article

Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton

scientific article published on 18 June 2008

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).

scientific article

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).

scientific article published on 12 December 2011

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

scholarly article

Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution

scientific article published on 7 January 2015

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium.

scientific article published in January 2008

Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences ⬇️

scientific article published on February 1, 2003

Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea.

scientific article published in June 2008

Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber

scientific article published in February 2010

Phylogenetics of the Cotton Genus (Gossypium): Character-State Weighted Parsimony Analysis of Chloroplast-DNA Restriction Site Data and Its Systematic and Biogeographic Implications

scholarly article by Jonathan F. Wendel & Victor A. Albert published January 1992 in Systematic Botany

Phylogeny of the Vittariaceae: Convergent Simplification Leads to a Polyphyletic Vittaria

scholarly article by Edmund H. Crane et al published October 1995 in American Fern Journal

Plant speciation - rise of the poor cousins

article

Polyploid plants take cytonuclear perturbations in stride

Polyploidy and genome evolution in plants

scientific article (publication date: April 2005)

Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense

scientific article

Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.).

scientific article published on 26 August 2014

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

scientific article published on 07 October 2009

Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes

scientific article published on 01 April 2002

Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes

scientific article published on 12 October 2015

Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton.

scientific article published on 19 August 2016

Rate variation among nuclear genes and the age of polyploidy in Gossypium

scientific article published on 2 April 2003

Re-evaluating the phylogeny of allopolyploid Gossypium L.

scientific article published on 4 June 2015

Recent Insights into Mechanisms of Genome Size Change in Plants

article

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

scientific article published on 10 April 2009

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

scientific article published in December 2012

Reproductive and Pollination Biology of the Endemic Hawaiian Cotton, Gossypium tomentosum (Malvaceae)

Reticulate Evolution Helps Explain Apparent Homoplasy in Floral Biology and Pollination in Baobabs (Adansonia; Bombacoideae; Malvaceae)

scientific article published on 06 November 2019

Salt-tolerance diversity in diploid and polyploid cotton (Gossypium) species

scientific article published on 08 December 2019

Segmental allotetraploidy generates extensive homeologous expression rewiring and phenotypic diversity at the population level in rice.

scientific article published on 12 August 2017

Spotted cotton oligonucleotide microarrays for gene expression analysis

scientific article

Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton

scientific article

Targeted sequence capture as a powerful tool for evolutionary analysis

scientific article published on 19 January 2012

The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants

scientific article published on 27 November 2019

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

scientific article published on 02 March 2020

The Significance of Allozyme Variation and Introgression in the Liriodendron tulipifera Complex (Magnoliaceae)

scientific article published in 1994

The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants

scientific article published on 10 February 2020

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis

scientific article published on 16 October 2019

The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco

scientific article

The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism

scientific article

The grand sweep of chromosomal evolution in angiosperms

scientific article published on 09 August 2020

The hairy problem of epigenetics in evolution

scientific article published on 01 July 2011

The history and disposition of transposable elements in polyploid Gossypium.

scientific article published in August 2010

The legacy of diploid progenitors in allopolyploid gene expression patterns

scientific article

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

scientific article published on 10 February 2018

The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber

scientific article published on 15 May 2020

The wondrous cycles of polyploidy in plants

scientific article published on 8 October 2015

Tobacco genomes quickly go up in smoke

scientific article published in January 2007

Toward sequencing cotton (Gossypium) genomes.

scientific article

Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae).

scientific article published in June 2004

Unraveling cis and trans regulatory evolution during cotton domestication

scientific article published on 27 November 2019

Unraveling the fabric of polyploidy

scientific article published on 01 May 2015

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