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List of works by Matthias Heinemann

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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

scientific article
Multidimensional optimality of microbial metabolism

scientific article published in May 2012
The quantitative and condition-dependent Escherichia coli proteome

scientific article published on 07 December 2015
Genetics. Getting closer to the whole picture.

scientific article
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

scientific article (publication date: 2006)
The cost of virulence: retarded growth of Salmonella Typhimurium cells expressing type III secretion system 1

scientific article
Condition-dependent cell volume and concentration of Escherichia coli to facilitate data conversion for systems biology modeling

scientific article
Whole lifespan microscopic observation of budding yeast aging through a microfluidic dissection platform

scientific article published on 14 March 2012
Mass spectrometry-based metabolomics of single yeast cells

scientific article
Functioning of a metabolic flux sensor in Escherichia coli.

scientific article published on 31 December 2012
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast

scientific article published on January 2013
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

scientific article published in 2021
In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network.

scientific article
Physiology of mycobacteria

scientific article published on January 2009
Systematic assignment of thermodynamic constraints in metabolic network models

scientific article published on 23 November 2006
Single cell metabolomics.

scientific article
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data

scientific article
Systems biology of microbial metabolism

scientific article published on March 10, 2010
Dissecting specific and global transcriptional regulation of bacterial gene expression

scientific article published on April 16, 2013
Prediction of microbial growth rate versus biomass yield by a metabolic network with kinetic parameters

scientific article
Differential glucose repression in common yeast strains in response to HXK2 deletion

scientific article published on 22 January 2010
Protein biogenesis machinery is a driver of replicative aging in yeast

scientific article
Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small-colony-variant phenotype

scientific article
Definitions and guidelines for research on antibiotic persistence

scientific article published on 01 July 2019
Bacterial persistence is an active σS stress response to metabolic flux limitation.

scientific article published on 21 September 2016
Optimization of a blueprint for in vitro glycolysis by metabolic real-time analysis

scientific article published on 20 March 2011
A flux-sensing mechanism could regulate the switch between respiration and fermentation.

scientific article published on 19 December 2011
Mass spectrometric method for analyzing metabolites in yeast with single cell sensitivity

scientific article
Nutritional systems biology modeling: from molecular mechanisms to physiology

scientific article
System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes

scientific article
RNA polymerase III limits longevity downstream of TORC1.

scientific article published on 29 November 2017
Autonomous Metabolic Oscillations Robustly Gate the Early and Late Cell Cycle

scientific article published on 10 December 2016
Calorie restriction does not elicit a robust extension of replicative lifespan in Saccharomyces cerevisiae

scientific article
Exploiting cell-free systems: Implementation and debugging of a system of biotransformations.

scientific article published in June 2010
Construction and use of a microfluidic dissection platform for long-term imaging of cellular processes in budding yeast

scientific article published on 02 May 2013
Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus

scientific article
Metabolic-flux dependent regulation of microbial physiology.

scientific article published on 15 November 2017
Metabolic heterogeneity in clonal microbial populations

scientific article published on 21 February 2018
A divide-and-conquer approach to analyze underdetermined biochemical models

scientific article published on 6 January 2009
Bacterial persistence from a system-level perspective.

scientific article published on 11 March 2017
Quantitative characterization of the auxin-inducible degron: a guide for dynamic protein depletion in single yeast cells

scientific article published on 5 July 2017
Characterization of the AlkS/P(alkB)-expression system as an efficient tool for the production of recombinant proteins in Escherichia coli fed-batch fermentations

scientific article published in February 2007
An engineered Calvin-Benson-Bassham cycle for carbon dioxide fixation in Methylobacterium extorquens AM1

scientific article published on 04 April 2018
Method for quantitative determination of spatial polymer distribution in alginate beads using Raman spectroscopy

scientific article published in March 2005
Dynamic single-cell NAD(P)H measurement reveals oscillatory metabolism throughout the E. coli cell division cycle

scientific article published in February 2018
Distinct transcriptional regulation of the two Escherichia coli transhydrogenases PntAB and UdhA.

scientific article published on 2 August 2016
Publisher Correction: Definitions and guidelines for research on antibiotic persistence

scientific article published on 01 July 2019
Integrated operation of continuous chromatography and biotransformations for the generic high yield production of fine chemicals.

scientific article
An upper limit on Gibbs energy dissipation governs cellular metabolism

scientific article published on 07 January 2019
Assessment of the interaction between the flux-signaling metabolite fructose-1,6-bisphosphate and the bacterial transcription factors CggR and Cra

scientific article published on 01 August 2018

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