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List of works by Richard V. Solé

A Cultural Diffusion Model for the Rise and Fall of Programming Languages

scientific article published in July 2015

A Synthetic Multicellular Memory Device.

scientific article published on 21 July 2016

A bottom-up characterization of transfer functions for synthetic biology designs: lessons from enzymology

scientific article published on 17 November 2014

A morphospace for synthetic organs and organoids: the possible and the actual

scientific article published on April 2016

A synthetic microbial Daisyworld: planetary regulation in the test tube

scientific article published in 2024

Abrupt transitions to tumor extinction: a phenotypic quasispecies model

scientific article

Adaptive dynamics of unstable cancer populations: The canonical equation.

scientific article published on 17 April 2018

Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion.

scientific article

Ageing, computation and the evolution of neural regeneration processes

scientific article published on 15 July 2020

An error catastrophe in cancer?

scientific article published in May 2004

Analytic solution of Hubbell's model of local community dynamics

scientific article

Appropriate Formulations for Dispersal in Spatially Structured Models: Reply

scientific article published in 1995

Are critical phenomena relevant to large-scale evolution?

scientific article published in 1996

Are network motifs the spandrels of cellular complexity?

scientific article published on 09 June 2006

Are rainforests self-organized in a critical state?

Author Correction: Engineering self-organized criticality in living cells

scientific article published on 23 September 2021

Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation

scientific article

Before the endless forms: embodied model of transition from single cells to aggregates to ecosystem engineering

scientific article (publication date: 2013)

Bifurcations and phase transitions in spatially extended two-member hypercycles

scientific article published on 21 July 2006

Bioengineering the biosphere?

scientific article published in 2015

Biomass-diversity responses and spatial dependencies in disturbed tallgrass prairies

scientific article published in April 2002

Bioremediation at a global scale: from the test tube to planet Earth

scientific article

Can a minimal replicating construct be identified as the embodiment of cancer?

scientific article published in May 2014

Cancer stem cells as the engine of unstable tumor progression.

scientific article

Catastrophic shifts and lethal thresholds in a propagating front model of unstable tumor progression ⬇️

scientific article published on 13 August 2014

Cellular heterogeneity results from indirect effects under metabolic tradeoffs

scientific article published on 25 September 2019

Chaos, Dispersal and Extinction in Coupled Ecosystems ⬇️

scientific article published on 01 August 1998

Chaotic Turing structures

Chromatic transitions in the emergence of syntax networks

scientific article published on 12 December 2018

Coinfection and superinfection in RNA virus populations: a selection-mutation model

scientific article published in June 2003

Complex discrete dynamics from simple continuous population models

scientific article published in May 2002

Complexity and fragility in ecological networks.

scientific article published in October 2001

Computational implementation of a tunable multicellular memory circuit for engineered eukaryotic consortia

scientific article published on 9 October 2015

Control, synchrony and the persistence of chaotic populations

Controlling chaos in discrete neural networks

Controlling chaos in ecology: from deterministic to individual-based models

scientific article published in November 1999

Controlling chaos in unidimensional maps using macroevolutionary algorithms

scientific article published on 18 January 2002

Cooperation in an RNA world

scientific article published on 01 October 2018

Correction to 'Punctuated equilibrium in the large-scale evolution of programming languages'.

scientific article published on April 2016

Corrigendum: Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations

scientific article published on 30 June 2015

Criticality and scaling in evolutionary ecology

scientific article published in April 1999

Criticality in Pareto Optimal Grammars?

scientific article published on 31 January 2020

Data completeness—the Achilles heel of drug-target networks

article by Jordi Mestres et al published September 2008 in Nature Biotechnology

Design principles of stripe-forming motifs: the role of positive feedback

scientific article published on 16 May 2014

Distributed biological computation with multicellular engineered networks

scientific article

Distributed computation: the new wave of synthetic biology devices

scientific article published on 18 April 2012

Distributed robustness in cellular networks: insights from synthetic evolved circuits

scientific article (publication date: 6 April 2009)

Diversity, competition, extinction: the ecophysics of language change

scientific article

Dynamic signaling in the Hog1 MAPK pathway relies on high basal signal transduction.

scientific article published on 24 March 2009

Ecological chaos

scientific article published in Nature

Ecological complexity and the biosphere: the next 30 years

scientific article published on 27 June 2022

Ecological networks and their fragility

scientific article published on July 2006

Ecology: scaling laws in the drier

scientific article published in September 2007

Effects of habitat destruction in a prey-predator metapopulation model

scientific article published in December 1998

Emergence of Zipf's law in the evolution of communication

scientific article published on 28 March 2011

Emergence of multicellularity in a model of cell growth, death and aggregation under size-dependent selection ⬇️

scientific article published on January 2015

Emergence of proto-organisms from bistable stochastic differentiation and adhesion

scientific article published on April 2016

Emergent chemical behavior in variable-volume protocells.

scientific article

Engineering self-organized criticality in living cells

Evolution and self-assembly of protocells

scientific article published on 17 October 2008

Evolution of Brains and Computers: The Roads Not Taken

scientific article published in 2022

Evolvability of feed-forward loop architecture biases its abundance in transcription networks

scientific article published on 19 January 2012

Evolving complexity: how tinkering shapes cells, software and ecological networks

scientific article published on 24 February 2020

Evolving protein interaction networks through gene duplication

article

Exploiting delayed transitions to sustain semiarid ecosystems after catastrophic shifts

scientific article published on 01 June 2018

Exploring the randomness of directed acyclic networks

scientific article published on 17 December 2010

External morphology explains the success of biological invasions

scientific article

Extinction and self-organized criticality in a model of large-scale evolution

scientific article published on 01 July 1996

Extinction: bad genes or weak chaos?

article

Extinctions and taxonomy in a trophic model of coevolution

scientific article published in July 2000

Field theory for a reaction-diffusion model of quasispecies dynamics

scientific article published on 24 October 2001

Gap percolation in rainforests

scholarly article by Richard V. Solé et al published July 2005 in Oikos

Gene network dynamics and the evolution of development

scientific article published on 01 December 2000

Gene networks capable of pattern formation: from induction to reaction-diffusion

scientific article published in August 2000

Generic Darwinian selection in catalytic protocell assemblies

scientific article published on October 2007

Genetic instability as a driver for immune surveillance

scientific article published on 11 December 2019

Global ecosystem thresholds driven by aridity

scientific article published on 13 February 2020

Habitat Fragmentation and Extinction Thresholds in Spatially Explicit Models

article

Habitat fragmentation and biodiversity collapse in neutral communities

scientific article published in 2004

How to make a synthetic multicellular computer

scientific article

Human synthetic lethal inference as potential anti-cancer target gene detection

scientific article

Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia

scientific article published in February 2016

In Silico Transitions to Multicellularity

Information catastrophe in RNA viruses through replication thresholds.

scientific article published on 8 November 2005

Information theory, predictability and the emergence of complex life

scientific article

Introduction. Artificial protocells.

scientific article published in May 2007

Language networks: Their structure, function, and evolution

Language: syntax for free?

scientific article published in March 2005

Least effort and the origins of scaling in human language

scientific article

Life cycle of a minimal protocell--a dissipative particle dynamics study

scientific article published in January 2007

Liquid brains, solid brains.

scientific article published in June 2019

Local and Ensemble Dynamics of Linked Populations: Reply to Ruxton

scientific article published in 1994

Mean-field stochastic theory for species-rich assembled communities

scientific article published in December 2000

Measuring chaos from spatial information

Measuring the hierarchy of feedforward networks

scientific article published on 01 March 2011

Metapopulation dynamics and spatial heterogeneity in cancer

scientific article

Microbial biotechnology as a tool to restore degraded drylands

scientific article published on 22 August 2017

Minimal model of self-replicating nanocells: a physically embodied information-free scenario

scientific article published on October 2007

Model of Droplet Dynamics in the Argentine Ant Linepithema Humile(Mayr) ⬇️

scientific article published on November 1, 2001

Modeling the effector - regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis

scientific article

Modelling lipid competition dynamics in heterogeneous protocell populations ⬇️

scientific article published on 14 July 2014

Monomeric bistability and the role of autoloops in gene regulation

scientific article

Multiple infection dynamics has pronounced effects on the fitness of RNA viruses

article

NEURAL NETWORKS AS SOURCES OF CHAOTIC MOTOR ACTIVITY IN ANTS AND HOW COMPLEXITY DEVELOPS AT THE SOCIAL SCALE

Nested subgraphs of complex networks

Network morphospace

scientific article published on February 2015

Network motifs in computational graphs: a case study in software architecture

scientific article published on 8 August 2005

Network topology and self-consistency in language games

scientific article published on 04 January 2006

Neutral fitness landscapes in signalling networks.

scientific article published on February 2007

Neutrality and robustness in evo-devo: emergence of lateral inhibition

scientific article (publication date: November 2008)

Noise and periodic modulations in neural excitable media

scientific article published in May 1999

Nonequilibrium Entropic Bounds for Darwinian Replicators

scientific article published on 31 January 2018

Nonequilibrium dynamics in lattice ecosystems: Chaotic stability and dissipative structures

article

ON THE FRACTAL NATURE OF ECOLOGICAL AND MACROEVOLUTIONARY DYNAMICS

article

On Forest Spatial Dynamics with Gap Formation

article

On Singularities and Black Holes in Combination-Driven Models of Technological Innovation Networks

scientific article

On the basic computational structure of gene regulatory networks

scientific article published on 21 July 2009

On the origins of hierarchy in complex networks

scientific article published on 29 July 2013

Pattern formation and optimization in army ant raids

scientific article published in January 2000

Patterns in syntactic dependency networks

scientific article published on 26 May 2004

Percolation in insect nest networks: evidence for optimal wiring

scientific article

Perturbations and indirect effects in complex food webs

Phase transitions in Pareto optimal complex networks ⬇️

scientific article published on 21 September 2015

Phase transitions in random networks: Simple analytic determination of critical points

scientific article

Phase transitions in virology

Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype-phenotype relationships

scientific article published on 01 March 2001

Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms

scientific article published in March 2001

Phenotypic diversity and chaos in a minimal cell model

scientific article

Population Cycles and Spatial Patterns in Snowshoe Hares: an Individual-Oriented Simulation

Population dynamics of synthetic terraformation motifs.

scientific article

Preface

Press perturbations and indirect effects in real food webs

scientific article published in September 2009

Protocell self-reproduction in a spatially extended metabolism-vesicle system

scientific article published on 27 October 2006

Punctuated equilibrium in the large-scale evolution of programming languages

scientific article

Reciprocal specialization in ecological networks

scientific article

Recovery after mass extinction: evolutionary assembly in large-scale biosphere dynamics

scientific article (publication date: 29 May 2002)

Red queen dynamics, competition and critical points in a model of RNA virus quasispecies

scientific article published in May 1999

Replication mode and landscape topology differentially affect RNA virus mutational load and robustness

scientific article published on 23 September 2009

Reply from J. Bascompte and R.V. Sole

scientific article published on 01 December 1995

Reply from R.V. Solé, S.C. Manrubia, M.J. Benton, S. Kauffman and P. Bak

scientific article published in August 1999

Rethinking complexity: modelling spatiotemporal dynamics in ecology.

scientific article

Robustness of the European power grids under intentional attack

scientific article published on 07 February 2008

Scaling in a network model of a multispecies ecosystem

Self-Organization Patterns in Wasp and Open Source Communities

scientific article published in March 2006

Self-organization versus hierarchy in open-source social networks

scientific article published on 26 October 2007

Self-organized criticality in Monte Carlo simulated ecosystems

Self-organized criticality in rainforest dynamics

Self-organized instability in complex ecosystems.

scientific article

Self-similarity in rain forests: Evidence for a critical state

article

Self-similarity of extinction statistics in the fossil record

scientific article published in Nature

Self-synchronization and task fulfilment in ant colonies

scientific article published in August 2000

Simple genomes, complex interactions: epistasis in RNA virus

scientific article published on June 2010

Simple model of recovery dynamics after mass extinction

article

Simple quasispecies models for the survival-of-the-flattest effect: The role of space

scientific article

Spatial dynamics of synthetic microbial mutualists and their parasites

scientific article

Spatial patterns in ant colonies.

scientific article published on 11 July 2002

Spatial self-organization in hybrid models of multicellular adhesion ⬇️

scientific article published in October 2016

Spatially Induced Bifurcations in Single-Species Population Dynamics

article

Spatially induced nestedness in a neutral model of phage-bacteria networks

scientific article

Spatiotemporal patterns in nature

scientific article published on 01 May 1998

Specialized or flexible feed-forward loop motifs: a question of topology

scientific article published on 31 August 2009

Spiral waves, chaos and multiple attractors in lattice models of interacting populations

Spontaneous emergence of modularity in cellular networks

scientific article published on January 2008

Stability and complexity of spatially extended two-species competition

article

Statistical physics of liquid brains

scientific article published on 01 June 2019

Superdiffusion and encounter rates in diluted, low dimensional worlds

Synthetic Biology for Terraformation Lessons from Mars, Earth, and the Microbiome

scientific article published on 09 February 2020

Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies

scientific article published on 15 January 2021

Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities

scientific article published on October 2007

Synthetic associative learning in engineered multicellular consortia.

scientific article

Synthetic biology: Biocircuits in synchrony

scientific article published on 09 April 2014

Synthetic circuit designs for earth terraformation

scientific article

Synthetic collective intelligence.

scientific article published on 8 February 2016

Synthetic criticality in cellular brains

scientific article published in 2021

Synthetic protocell biology: from reproduction to computation

scientific article published on October 2007

Synthetic soil crusts against green-desert transitions: a spatial model

scientific article published on 26 August 2020

Synthetic transitions: towards a new synthesis

scientific article

Task partitioning in a ponerine ant.

scientific article published in April 2002

Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance

scientific article

The DivGame Simulator: a stochastic cellular automata model of rainforest dynamics

article

The architecture of mutualistic networks as an evolutionary spandrel.

scientific article

The causes of epistasis in genetic networks

scientific article published on 20 September 2011

The ecology of cancer differentiation therapy

scientific article published on 09 December 2020

The fittest versus the flattest: experimental confirmation of the quasispecies effect with subviral pathogens.

scientific article published in December 2006

The major synthetic evolutionary transitions

scientific article

The morphospace of language networks.

scientific article published on 11 July 2018

The small world of human language ⬇️

scientific article published on 01 November 2001

The topology of drug-target interaction networks: implicit dependence on drug properties and target families

scientific article

Topological patterns in street networks of self-organized urban settlements

Topological properties of food webs: from real data to community assembly models

article by Jose M. Montoya & Richard V. Solé published September 2003 in Oikos

Topology and evolution of technology innovation networks

scientific article published on 28 November 2007

Topology of technology graphs: Small world patterns in electronic circuits ⬇️

scientific article published on September 24, 2001

Topology, tinkering and evolution of the human transcription factor network

scientific article published in December 2005

Toward Synthetic Spatial Patterns in Engineered Cell Populations with Chemotaxis

scientific article published on 23 March 2016

Towards a mathematical theory of meaningful communication.

scientific article

Tumour neoantigen heterogeneity thresholds provide a time window for combination immunotherapy

scientific article published on 28 October 2020

Ultrasound approach tracks gut microbes

scientific article published in January 2018

Universality of Zipf's law.

scientific article published in July 2010

Using information theory to decode network coevolution

scientific article

Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations

scientific article

When metabolism meets topology: Reconciling metabolite and reaction networks

scientific article published in March 2010

Why are cellular switches Boolean? General conditions for multistable genetic circuits

scientific article published in November 2009

Zipf's Law, unbounded complexity and open-ended evolution

scientific article published on 01 December 2018

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