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List of works by Daniela Witten

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

scientific article

A Framework for Feature Selection in Clustering ⬇️

scientific article published on June 1, 2010

A comparative study of machine learning methods for authorship attribution

scholarly article by M. L. Jockers & Daniela Witten published 12 April 2010 in Literary and Linguistic Computing

A general framework for estimating the relative pathogenicity of human genetic variants

scientific article (publication date: March 2014)

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

scientific article published on 17 April 2009

A recoding method to improve the humoral immune response to an HIV DNA vaccine

scientific article

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

scientific article

An Introduction to Statistical Learning

textbook

Are clusterings of multiple data views independent?

scientific article published on 08 February 2019

Breast Angiosarcoma: Case Series and Expression of Vascular Endothelial Growth Factor ⬇️

scientific article published on December 11, 2009

CADD: predicting the deleteriousness of variants throughout the human genome

Convex Modeling of Interactions with Strong Heredity ⬇️

scientific article

Convex Regression with Interpretable Sharp Partitions

scientific article

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

scientific article

Covariance-regularized regression and classification for high-dimensional problems

scientific article

Data-adaptive additive modeling

scientific article published on 16 July 2018

Detection of an endogenous urinary biomarker associated with CYP2D6 activity using global metabolomics

scientific article published on December 2014

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

scientific article

Discussion of 'Gene hunting with hidden Markov model knockoffs'

scientific article published on 13 February 2019

EXACT SPIKE TRAIN INFERENCE VIA ℓ0 OPTIMIZATION.

scientific article published on 13 November 2018

Endogenous versus tumor-specific host response to breast carcinoma: a study of stromal response in synchronous breast primaries and biopsy site changes

scientific article

Extensions of sparse canonical correlation analysis with applications to genomic data

scientific article

Fast nonconvex deconvolution of calcium imaging data

scientific article published on 08 February 2019

Fused Lasso Additive Model

scientific article

Graph Estimation with Joint Additive Models

scientific article

Hierarchical maintenance of MLL myeloid leukemia stem cells employs a transcriptional program shared with embryonic rather than adult stem cells

scientific article published on February 2009

Hypothesis testing for differentially correlated features

scientific article published on 4 April 2016

Inferring clonal composition from multiple sections of a breast cancer

scientific article

Is GATA3 expression maintained in regional metastases?: a study of paired primary and metastatic urothelial carcinomas

scientific article

Learning Graphical Models With Hubs

scientific article published on October 2014

Massively parallel functional dissection of mammalian enhancers in vivo

scientific article

MicroRNA expression profiles associated with mutational status and survival in malignant melanoma

scientific article

Molecular signatures from omics data: from chaos to consensus

scientific article

Multi-scale network regression for brain-phenotype associations

scientific article published on 26 March 2020

Nearly assumptionless screening for the mutually-exciting multivariate Hawkes process

scientific article published on 11 April 2017

Network Reconstruction From High-Dimensional Ordinary Differential Equations

scientific article published on 7 August 2017

Node-Based Learning of Multiple Gaussian Graphical Models.

scientific article published on January 2014

Nonadaptive explanations for signatures of partial selective sweeps in Drosophila

scientific article published on 16 January 2008

Normalization, testing, and false discovery rate estimation for RNA-sequencing data ⬇️

scientific article published on October 14, 2011

On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements

scientific article

Pathway Graphical Lasso

scientific article published on January 2015

Penalized Classification using Fisher’s Linear Discriminant ⬇️

scientific article published on November 1, 2011

Penalized unsupervised learning with outliers ⬇️

scientific article published on January 1, 2013

Postoperative pain following foot and ankle surgery: a prospective study

scientific article

Reassessing authorship of the Book of Mormon using delta and nearest shrunken centroid classification

Replicates in high dimensions, with applications to latent variable graphical models

scientific article

SCALPEL: EXTRACTING NEURONS FROM CALCIUM IMAGING DATA

Scientific research in the age of omics: the good, the bad, and the sloppy ⬇️

scientific article published on October 4, 2012

Selection and estimation for mixed graphical models

scientific article published on 24 December 2014

Simultaneous detection and estimation of trait associations with genomic phenotypes ⬇️

scientific article published on 5 August 2016

Sparse Biclustering of Transposable Data

scientific article

Sparse Discriminant Analysis

scientific article

Statistical properties of convex clustering

scientific article published on 14 October 2015

Structured Learning of Gaussian Graphical Models ⬇️

scientific article published on January 2012

Survival analysis with high-dimensional covariates

scientific article published on 04 August 2009

TESTING SIGNIFICANCE OF FEATURES BY LASSOED PRINCIPAL COMPONENTS.

scientific article published on September 2008

The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping

scientific article published on February 2014

The Stanford Integrated Psychosocial Assessment for Transplantation (SIPAT): A New Tool for the Psychosocial Evaluation of Pre-Transplant Candidates ⬇️

scientific article published on March 1, 2012

The benefits of implant removal from the foot and ankle

scientific article

The cluster graphical lasso for improved estimation of Gaussian graphical models

scientific article published on May 2015

The joint graphical lasso for inverse covariance estimation across multiple classes

scientific article

The prognostic value of tumor-associated macrophages in leiomyosarcoma: a single institution study

scientific article published on February 2011

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

scientific article

Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls

scientific article

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