List of works - Jan Pawłowski

The Revised Classification of Eukaryotes

taxonomic paper

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

scientific article

Phylogenomics reshuffles the eukaryotic supergroups

scientific article published in 2007

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

scientific article

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

scientific article

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

scientific article

First insights into the biodiversity and biogeography of the Southern Ocean deep sea.

scientific article published in May 2007

Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces

scientific article (publication date: 16 March 1999)

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

scientific article (publication date: 29 November 2016)

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

scientific article published on 01 January 2019

Phylogenetic analysis of the suborder plagiorchiata (Platyhelminthes, Digenea) based on partial lsrDNA sequences

scientific article published in January 2000

Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning

scientific article published on April 2000

A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record

scientific article (publication date: 7 August 2006)

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

scientific article

Eukaryotic richness in the abyss: insights from pyrotag sequencing

scientific article

The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes

scientific article

How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys

scientific article

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

scientific article

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

scientific article

Molecular identification of developmental stages in Opecoelidae (Digenea).

scientific article published in November 1999

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

scientific article

The evolution of early Foraminifera

scientific article published on September 22, 2003

Invasive alga reaches California.

scientific article published in November 2000

Untangling the phylogeny of amoeboid protists

scientific article (publication date: 2009)

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

scientific article published on May 1997

Bipolar gene flow in deep-sea benthic foraminifera

scientific article published on 23 August 2007

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

scientific article

Molecular Phylogeny and Classiﬁcation of the Lobose Amoebae

scientific article

Molecular and morphological differentiation between species of the Plagiorchis vespertilionis group (Digenea, Plagiorchiidae) occurring in European bats, with a re-description of P. vespertilionis (Müller, 1780).

scientific article

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

scientific article published on 10 September 2015

The Parazoanthidae (Hexacorallia: Zoantharia) DNA taxonomy: description of two new genera

Deep phylogeny and evolution of slime moulds (mycetozoa).

scientific article

Molecular evidence for the aquarium origin of the green alga Caulerpa taxifolia introduced to the Mediterranean Sea

article

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

scientific article

higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1-A and small subunit rRNA gene sequences

scientific article

Phylogeny and Rates of Molecular Evolution of Planktonic Foraminifera: SSU rDNA Sequences Compared to the Fossil Record

scientific article published on September 1, 1997

Two different 16S rRNA genes in a mycobacterial strain

scientific article published on October 1996

Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes

scientific article published on 29 August 2003

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup

article

Can abundance of protists be inferred from sequence data: a case study of foraminifera

scientific article

Use of the ITS rDNA for elucidation of some life-cycles of Mesometridae (Trematoda, Digenea).

scientific article

Ancient DNA complements microfossil record in deep-sea subsurface sediments

scientific article (publication date: 23 August 2013)

Early origin of foraminifera suggested by SSU rRNA gene sequences

scientific article published in March 1996

Short rDNA barcodes for species identification in foraminifera

scientific article published on 22 January 2010

Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts

scientific article

Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae.

scientific article published on 12 October 2009

Phylogenetic position of Multicilia marina and the evolution of Amoebozoa

scientific article

List of works by Jan Pawłowski

The Revised Classification of Eukaryotes

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

Phylogenomics reshuffles the eukaryotic supergroups

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

Patterns of rare and abundant marine microbial eukaryotes

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

First insights into the biodiversity and biogeography of the Southern Ocean deep sea.

Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Phylogenetic analysis of the suborder plagiorchiata (Platyhelminthes, Digenea) based on partial lsrDNA sequences

Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning

A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

Eukaryotic richness in the abyss: insights from pyrotag sequencing

The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes

How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

Molecular identification of developmental stages in Opecoelidae (Digenea).

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

The evolution of early Foraminifera

Invasive alga reaches California.

Untangling the phylogeny of amoeboid protists

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

Bipolar gene flow in deep-sea benthic foraminifera

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

Molecular Phylogeny and Classiﬁcation of the Lobose Amoebae

Molecular and morphological differentiation between species of the Plagiorchis vespertilionis group (Digenea, Plagiorchiidae) occurring in European bats, with a re-description of P. vespertilionis (Müller, 1780).

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

The Parazoanthidae (Hexacorallia: Zoantharia) DNA taxonomy: description of two new genera

Deep phylogeny and evolution of slime moulds (mycetozoa).

Molecular evidence for the aquarium origin of the green alga Caulerpa taxifolia introduced to the Mediterranean Sea

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1-A and small subunit rRNA gene sequences

Phylogeny and Rates of Molecular Evolution of Planktonic Foraminifera: SSU rDNA Sequences Compared to the Fossil Record

Two different 16S rRNA genes in a mycobacterial strain

Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup

Can abundance of protists be inferred from sequence data: a case study of foraminifera

Use of the ITS rDNA for elucidation of some life-cycles of Mesometridae (Trematoda, Digenea).

Ancient DNA complements microfossil record in deep-sea subsurface sediments

Early origin of foraminifera suggested by SSU rRNA gene sequences

Short rDNA barcodes for species identification in foraminifera

Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts

Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae.

Phylogenetic position of Multicilia marina and the evolution of Amoebozoa