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List of works by Alexandre Aleixo

A dynamic continental moisture gradient drove Amazonian bird diversification

scientific article published on 03 July 2019

A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years ⬇️

scientific article (publication date: 22 February 2012)

A phylogenomic perspective on the robust capuchin monkey (Sapajus) radiation: First evidence for extensive population admixture across South America.

scientific article published on 12 March 2018

A putative RA-like region in the brain of the scale-backed antbird, Willisornis poecilinotus (Furnariides, Suboscines, Passeriformes, Thamnophilidae)

scientific article

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network

scientific article

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

scientific article published on 01 January 2019

Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow

scientific article published in 2023

Annotated checklist of the birds of Brazil by the Brazilian Ornithological Records Committee—second edition

Biogeography and diversification of bare‐eyes, an endemic Amazonian clade

scientific article published in 2022

Biogeography and spatio-temporal diversification of Selenidera and Andigena Toucans (Aves: Ramphastidae) ⬇️

scientific article published on July 2, 2013

Capuchin monkey biogeography: understanding Sapajus Pleistocene range expansion and the current sympatry between Cebus and Sapajus

scholarly article by Marcela G. M. Lima et al published 29 January 2017 in Journal of Biogeography

Certhiasomus, a new genus of woodcreeper (Aves: Passeriformes: Dendrocolaptidae) ⬇️

scientific article published in April 2010

Chromosome painting in Glyphorynchus spirurus (Vieillot, 1819) detects a new fission in Passeriformes

scientific article published in PLoS ONE

Combining phylogeography and landscape genetics ofXenopipo atronitens(Aves: Pipridae), a white sandcampinaspecialist, to understand Pleistocene landscape evolution in Amazonia

article

Comparative genetic diversity of wild and captive populations of the bare-faced curassow (Crax fasciolata) based on cross-species microsatellite markers: implications for conservation and management

scientific article

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes

scientific article published on 01 July 2018

Correlated evolution of beak morphology and song in the neotropical woodcreeper radiation

scientific article

Cryptic patterns of diversification of a widespread Amazonian Woodcreeper species complex (Aves: Dendrocolaptidae) inferred from multilocus phylogenetic analysis: Implications for historical biogeography and taxonomy ⬇️

scientific article published on May 3, 2013

Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves - Thamnophilidae): the tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest

scientific article published on 5 October 2014

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Distribution, Behavior, and Conservation Status of the Rufous Twistwing (Cnipodectes superrufus)

Diversification and species limits in scale-backed antbirds ( Willisornis : Thamnophilidae), an Amazonian endemic lineage ⬇️

scientific article published on 20 April 2022

Diversification history in the Dendrocincla fuliginosa complex (Aves: Dendrocolaptidae): Insights from broad geographic sampling

scientific article published on 17 August 2019

Diversity and evolution of Amazonian birds: implications for conservation and biogeography

scientific article published on 08 August 2019

Earth history and the passerine superradiation

scientific article published on 01 April 2019

Evidence for mtDNA capture in the jacamar Galbula leucogastra/chalcothorax species-complex and insights on the evolution of white-sand ecosystems in the Amazon basin

scientific article published on 17 July 2018

Evolutionary history of Ramphastos toucans: molecular phylogenetics, temporal diversification, and biogeography.

scientific article published on 20 August 2009

Forest corridors between the central Andes and the southern Atlantic Forest enabled dispersal and peripatric diversification without niche divergence in a passerine

scientific article published on 06 August 2018

Genomic Architecture Predicts Tree Topology, Population Structuring, and Demographic History in Amazonian Birds

scientific article published in January 2024

Genomic data reveal a protracted window of introgression during the diversification of a neotropical woodcreeper radiation

scientific article published on 27 December 2019

Genomic differentiation with gene flow in a widespread Amazonian floodplain‐specialist bird species

scientific article published in 2021

Geographic Drivers of Genetic and Plumage Color Diversity in the Blue-Crowned Manakin

scientific article published on 22 August 2023

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds.

scientific article published on 11 September 2017

Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains

scientific article published in 2021

Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification.

scientific article published in June 2004

Hybrid speciation leads to novel male secondary sexual ornamentation of an Amazonian bird

scientific article published on 26 December 2017

Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds.

scientific article published on 11 June 2015

Implications of headwater contact zones for the riverine barrier hypothesis: a case study of the Blue-capped Manakin (<i>Lepidothrix coronata</i>)

scientific article published on 20 October 2023

Integrative taxonomy of Flatbill Flycatchers (Tyrannidae) reveals a new species from the Amazonian lowlands ⬇️

scientific article published on 10 November 2021

Lineage diversification and morphological evolution in a large-scale continental radiation: the neotropical ovenbirds and woodcreepers (aves: Furnariidae).

scientific article

MITOCHONDRIAL INTROGRESSION OBSCURES PHYLOGENETIC RELATIONSHIPS AMONG MANAKINS OF THE GENUS LEPIDOTHRIX (AVES: PIPRIDAE).

scientific article published on 12 April 2018

Mitogenomes of two neotropical bird species and the multiple independent origin of mitochondrial gene orders in Passeriformes

scientific article published on 17 February 2018

Molecular Systematics and Plumage Evolution in the Monotypic Obligate Army-Ant-Following GenusSkutchia(Thamnophilidae)

scholarly article published in The Condor in May 2009

Molecular phylogeny and diversification of a widespread Neotropical rainforest bird group: The Buff-throated Woodcreeper complex, Xiphorhynchus guttatus/susurrans (Aves: Dendrocolaptidae).

scientific article published on 12 February 2015

Molecular systematics and biogeography of lowland antpittas (Aves, Grallariidae): The role of vicariance and dispersal in the diversification of a widespread Neotropical lineage.

scientific article published on 9 December 2017

Molecular systematics of the Amazonian endemic genus Hylexetastes (Aves: Dendrocolaptidae): taxonomic and conservation implications ⬇️

scientific article

Molecular systematics of the new world screech-owls (Megascops: Aves, Strigidae): biogeographic and taxonomic implications

scientific article published on 8 October 2015

Molecular systematics, biogeography and taxonomy of forest‐falcons in the <i>Micrastur ruficollis</i> species complex (Aves: Falconidae)

scientific article published in 2019

Morphologically cryptic Amazonian bird species pairs exhibit strong postzygotic reproductive isolation.

scientific article published in March 2018

Multi-character taxonomic review, systematics, and biogeography of the Black-capped/Tawny-bellied Screech Owl (Megascops atricapilla - M. watsonii) complex (Aves: Strigidae)

scientific article

Multilocus phylogeography of the Wedge-billed Woodcreeper Glyphorynchus spirurus (Aves, Furnariidae) in lowland Amazonia: widespread cryptic diversity and paraphyly reveal a complex diversification pattern

scientific article published on 9 October 2012

Multiple speciation across the Andes and throughout Amazonia: the case of the spot-backed antbird species complex (Hylophylax naevius/Hylophylax naevioides)

article

New molecular evidence supports the species status of Kaempfer's Woodpecker (Aves, Picidae).

scientific article published on 17 May 2013

Parrot Genomes and the Evolution of Heightened Longevity and Cognition

scientific article published on 06 December 2018

Phenotypic similarity leads to taxonomic inconsistency: A revision of the lowland's antpittas ⬇️

scientific article published on 24 November 2018

Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi ⬇️

scientific article

Phylogenomic analysis confirms the relationships among toucans, toucan-barbets, and New World barbets but reveals paraphyly of <i>Selenidera</i> toucanets and evidence for mitonuclear discordance

scientific article published on 4 May 2023

Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness

scientific article published on 17 November 2020

Phylogeny and systematics of Chiroxiphia and Antilophia manakins (Aves, Pipridae)

scientific article published on 12 June 2018

Phylogeographic variation within the Buff-browed Foliage-gleaner (Aves: Furnariidae: Syndactyla rufosuperciliata) supports an Andean-Atlantic forests connection via the Cerrado

scientific article published on 17 January 2019

Phylogeography of the chestnut-tailed antbird (Myrmeciza hemimelaena) clarifies the role of rivers in Amazonian biogeography

scholarly article by Alexandre M. Fernandes et al published 2 May 2012 in Journal of Biogeography

Phylogeography, inter-specific limits and diversification of Turdus ignobilis (Aves: Turdidae).

scientific article

Polyphyly ofCampylorhamphus, and Description of a New Genus forC. pucherani(Dendrocolaptinae)

scientific article (publication date: April 2010)

Pseudasthenes, a new genus of ovenbird (Aves: Passeriformes: Furnariidae) ⬇️

scientific article published in April 2010

Quaternary climate changes as speciation drivers in the Amazon floodplains

scientific article published on 11 March 2020

Recent chapters of Neotropical history overlooked in phylogeography: Shallow divergence explains phenotype and genotype uncoupling in Antilophia manakins

scientific article published on 22 September 2018

Recent divergence and lack of shared phylogeographic history characterize the diversification of neotropical savanna birds

scientific article published on 09 March 2021

Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae).

scientific article published on 15 March 2018

Species interactions regulate the collapse of biodiversity and ecosystem function in tropical forest fragments

scientific article published in October 2015

Specimen collection: an essential tool

scientific article

Systematic revision of the Spotted Antpitta (Grallariidae: Hylopezus macularius), with description of a cryptic new species from Brazilian Amazonia

scientific article published in April 2012

Temporal and spatial diversification of Pteroglossus araçaris (AVES: Ramphastidae) in the neotropics: constant rate of diversification does not support an increase in radiation during the Pleistocene.

scientific article published on 3 November 2010

The Genomic Resources Collection Policy of the Finnish Museum of Natural History

scientific article published on 11 January 2021

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

scientific article published on 18 December 2015

The drivers of tropical speciation

scientific article

The evolution of a tropical biodiversity hotspot

scientific article

The niche and phylogeography of a passerine reveal the history of biological diversification between the Andean and the Atlantic forests

scientific article

The role of landscape change and paleoclimatic events in shaping the evolutionary history of the Polioptila gnatcatchers (Passeriformes, Polioptilidae) with emphasis on species associated with open habitats

Two hundred years of local avian extinctions in eastern Amazonia.

scientific article published on 29 April 2014

Using avian functional traits to assess the impact of land-cover change on ecosystem processes linked to resilience in tropical forests

scientific article published in December 2016

West–east diversification model explains pattern phylogeography of the Band-tailed Manakin Pipra fasciicauda

scientific article published on 18 January 2023

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