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List of works by Bernhard Misof

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion

scientific article

A Plea for Standardized Nuclear Markers in Metazoan DNA Taxonomy

scientific article published on 15 January 2020

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny.

scientific article published on 16 May 2013

A hexapod nuclear SSU rRNA secondary-structure model and catalog of taxon-specific structural variation

scientific article published in January 2006

A new species of Mengenilla (Insecta, Strepsiptera) from Tunisia

scientific article

A phylogenomic approach to resolve the arthropod tree of life

scientific article

A prelude to the Caucasus Barcode of Life Platform (CaBOL): Biodiversity Days in Georgia in 2018 and 2019 ⬇️

scientific article published in 2019

A priori assessment of data quality in molecular phylogenetics

scholarly article by Bernhard Misof et al published January 2014 in Algorithms for Molecular Biology

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

scientific article (publication date: October 2009)

Advances in Geometroidea phylogeny, with characterization of a new family based on Pseudobiston pinratanai (Lepidoptera, Glossata)

scholarly article by Hossein Rajaei et al published 2 March 2015 in Zoologica Scripta

AliGROOVE--visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support

scientific article

Amplified fragment length polymorphisms, the evolution of the land snail genusTheba(Stylommatophora: Helicidae), and an objective approach for relating fossils to internal nodes of a phylogenetic tree using geometric morphometrics

scholarly article by Martin Haase et al published 20 March 2014 in Zoological Journal of the Linnean Society

An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

scientific article published on 01 January 2019

An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

scientific article published on 03 June 2020

Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

scientific article

Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids

scientific article published on 12 August 2018

Author Correction: Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera

scientific article published on 03 November 2020

Automated Masking of AFLP Markers Improves Reliability of Phylogenetic Analyses ⬇️

scientific article published on November 9, 2012

BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design

scientific article published in 2016

Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences.

scientific article published on 28 September 2012

Brochosomins and other novel proteins from brochosomes of leafhoppers (Insecta, Hemiptera, Cicadellidae).

scientific article published on 10 January 2018

COGNATE: comparative gene annotation characterizer.

scientific article

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

scientific article

Complex sexually dimorphic traits shape the parallel evolution of a novel reproductive strategy in Sulawesi ricefishes (Adrianichthyidae)

scientific article published on 20 April 2021

Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

scientific article published on 15 October 2020

Correction: Long Branch Effects Distort Maximum Likelihood Phylogenies in Simulations Despite Selection of the Correct Model.

scientific article published on 19 October 2012

Correction: Radiating on Oceanic Islands: Patterns and Processes of Speciation in the Land Snail Genus (Risso 1826)

Dating the arthropod tree based on large-scale transcriptome data.

scientific article

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

scientific article (publication date: 2014)

Distribution of the Yellow-lemon Tree Frog,Hyla savignyi(Audouin, 1827), in southern Arabia: updates and extensions of previous records

article by Cornelya F. C. Klütsch et al published January 2004 in Zoology in the Middle East

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

scientific article published on 09 January 2019

Diversity of Anisoptera (Odonata): infering speciation processes from patterns of morphological diversity

scientific article published in January 2002

Evolutionary History of the Hymenoptera

scientific article

Evolutionary diversification of the genus Theba (Gastropoda: Helicidae) in space and time: a land snail conquering islands and continents.

scientific article

Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

scientific article published on 14 January 2019

Exploring diversity in cryptorhynchine weevils (Coleoptera) using distance-, character- and tree-based species delineation.

scientific article published on 2 December 2011

Extended distribution patterns of the Arabian burnet moth Reissita simonyi (Lepidoptera: Zygaenidae; Rebel, 1899) and the Arabian wall brown Lasiommata felix (Lepidoptera: Nymphalidae: Satyrinae; Warnecke, 1929) in Southern Arabia. ⬇️

scholarly article by Cornelya F. C. Klütsch et al published 27 December 2005 in Contributions to Entomology

Four myriapod relatives - but who are sisters? No end to debates on relationships among the four major myriapod subgroups

scientific article published on 04 November 2020

Gene content evolution in the arthropods

scientific article published on 23 January 2020

Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders

scientific article

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

scientific article published on 26 May 2020

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

scientific article

Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

scientific article published on 17 May 2019

Head morphology of Tricholepidion gertschi indicates monophyletic Zygentoma.

scientific article

Hemocyanin suggests a close relationship of Remipedia and Hexapoda.

scientific article published on 19 August 2009

Higher phylogeny of zygaenid moths (Insecta: Lepidoptera) inferred from nuclear and mitochondrial sequence data and the evolution of larval cuticular cavities for chemical defence

scientific article

Hypothesis on monochromatic vision in scorpionflies questioned by new transcriptomic data.

scientific article published on 29 June 2018

Improved phylogenetic analyses corroborate a plausible position of Martialis heureka in the ant tree of life

scientific article published in 2011

Insect phylogenomics: results, problems and the impact of matrix composition

scientific article published on 23 May 2012

Local adaptation, refugial isolation and secondary contact of Alpine populations of the land snail Arianta arbustorum

scientific article published in 2013

Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model

scientific article (publication date: 2012)

Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis

scientific article published on October 2015

Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

scientific article

Molecular taxonomy in pholcid spiders (Pholcidae, Araneae): evaluation of species identification methods using CO1 and 16S rRNA

scholarly article by Jonas J. Astrin et al published September 2006 in Zoologica Scripta

Morphological and molecular evidence converge upon a robust phylogeny of the megadiverse Holometabola

article

Of Phenotypes and Genotypes: Two Sides of one Coin in Taxonomy? ⬇️

Old World and New World Phasmatodea: Phylogenomics Resolve the Evolutionary History of Stick and Leaf Insects

scientific article published on 7 October 2019

Oligonucleotide primers for targeted amplification of single-copy nuclear genes in apocritan Hymenoptera

scientific article

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes

scientific article

Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda

scientific article

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

scientific article (publication date: 31 March 2010)

Phylogenetic Affinities of Mabuya atlantica Schmidt, 1945, Endemic to the Atlantic Ocean Archipelago of Fernando de Noronha (Brazil): Necessity of Partitioning the Genus Mabuya Fitzinger, 1826 (Scincidae: Lygosominae)

scientific article published in January 2002

Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects

scientific article

Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing.

scientific article

Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny)

scientific article

Phylogenomic analysis of Apoidea sheds new light on the sister group of bees

scientific article published on 18 May 2018

Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera

scientific article published on 02 October 2020

Phylogenomics and the evolution of hemipteroid insects

article published in the Proceedings of the National Academy of Sciences of the United States of America

Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error

scientific article published on 26 February 2019

Phylogenomics resolves the timing and pattern of insect evolution

scientific article (publication date: 6 November 2014)

Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

scientific article published on 21 October 2019

Phylogeny and age of chromidotilapiine cichlids (Teleostei: Cichlidae)

scholarly article by Julia Schwarzer et al published 11 June 2014 in Hydrobiologia

Phylogeography of an invasive land snail: natural range expansion versus anthropogenic dispersal in Theba pisana pisana

Pushing short DNA fragments to the limit: Phylogenetic relationships of 'hydrobioid' gastropods (Caenogastropoda: Rissooidea).

scientific article

Radiating on oceanic islands: patterns and processes of speciation in the land snail genus Theba (Risso 1826)

scientific article

Re-assessing the diversity of negative strand RNA viruses in insects

scientific article published on 12 December 2019

Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution

scientific article (publication date: 7 November 2012)

Repertoire-wide gene structure analyses: a case study comparing automatically predicted and manually annotated gene models

scientific article published on 17 October 2019

Resolving the phylogenetic position of Hygrobiidae (Coleoptera: Adephaga) requires objective statistical tests and exhaustive phylogenetic methodology: a response to Cai et al. (2020)

scientific article published on 06 August 2020

Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera ⬇️

scientific article published on 22 May 2020

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

scientific article (publication date: 3 December 2013)

Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola.

scientific article published in April 2018

Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation.

scientific article published on 3 August 2009

Snails in the desert: Species diversification of Theba (Gastropoda: Helicidae) along the Atlantic coast of NW Africa.

scientific article

Structural mouthpart interaction evolved already in the earliest lineages of insects

scientific article

Testing heterogeneous base composition as potential cause for conflicting phylogenetic signal between mitochondrial and nuclear DNA in the land snail genus Theba Risso 1826 (Gastropoda: Stylommatophora: Helicoidea)

article

The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations

scientific article published on 01 January 2020

The Genomic Basis of Arthropod Diversity

article published in 2018

The evolution and genomic basis of beetle diversity

scientific article published on 18 November 2019

The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data

scientific article

The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations

article

The identification of concerted convergence in insect heads corroborates palaeoptera

scientific article published on 23 November 2012

The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

scientific article

The importance of biobanking in molecular taxonomy, with proposed definitions for vouchers in a molecular context

scientific article

The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera.

scientific article published on 28 December 2017

The power of neuropeptide precursor sequences to reveal phylogenetic relationships in insects: A case study on Blattodea

scientific article published on 15 November 2019

The root of the East African cichlid radiations

scientific article

The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences

scientific article

Time and Origin of Cichlid Colonization of the Lower Congo Rapids ⬇️

scientific article published on July 20, 2011

Towards an 18S phylogeny of hexapods: accounting for group-specific character covariance in optimized mixed nucleotide/doublet models.

scientific article published on 25 October 2007

Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae).

scientific article published on 5 September 2017

Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success.

scientific article published on 13 December 2017

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects : Insect insulator proteins.

scientific article

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