List of works - José Paulo Sampaio

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

scientific article

A Quasi-Domesticate Relic Hybrid Population of Saccharomyces cerevisiae × S. paradoxus Adapted to Olive Brine.

scientific article published on 29 May 2019

A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete

scientific article

A higher-level phylogenetic classification of the Fungi ⬇️

scientific article

A population genomics insight into the Mediterranean origins of wine yeast domestication

scientific article published on 6 August 2015

Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.

scientific article

Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites.

scientific article

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences.

scientific article

Application of temperature gradient gel electrophoresis to the study of yeast diversity in the estuary of the Tagus river, Portugal

scientific article

Assessment of yeast diversity in a marine environment in the south of Portugal by microsatellite-primed PCR.

scientific article

Auriculibuller fuscus gen. nov., sp. nov. and Bullera japonica sp. nov., novel taxa in the Tremellales

scientific article

Biogeography, host specificity, and molecular phylogeny of the basidiomycetous yeast Phaffia rhodozyma and its sexual form, Xanthophyllomyces dendrorhous

scientific article published on 22 December 2006

Blastobotrys bombycis sp. nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva Bombyx mori

scientific article published on 27 June 2018

Candida oceani sp. nov., a novel yeast isolated from a Mid-Atlantic Ridge hydrothermal vent (-2300 meters).

scientific article

Classification of heterobasidiomycetous yeasts: characteristics and affiliation of genera to higher taxa of heterobasidiomycetes.

scientific article published on March 1993

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

scientific article (publication date: 9 November 2016)

Cryolevonia gen. nov. and Cryolevonia schafbergensis sp. nov., a cryophilic yeast from ancient permafrost and melted sea ice

scientific article

Cryptococcus agrionensis sp. nov., a basidiomycetous yeast of the acidic rock drainage ecoclade, isolated from an acidic aquatic environment of volcanic origin

scientific article

Cryptococcus festucosus sp. nov. a new hymenomycetous yeast in the Holtermannia clade

scientific article

Cryptococcus ibericus sp. nov., Cryptococcus aciditolerans sp. nov. and Cryptococcus metallitolerans sp. nov., a new ecoclade of anamorphic basidiomycetous yeast species from an extreme environment associated with acid rock drainage in Sao Domingo...

scientific article published on 20 July 2009

Cryptococcus nemorosus sp. nov. and Cryptococcus perniciosus sp. nov., related to Papiliotrema Sampaio et al. (Tremellales).

scientific article

Cryptococcus paraflavus sp. nov. (Tremellales), isolated from steppe plants in Russia

scientific article

Cryptococcus silvicola nov. sp. from nature reserves of Russia and Portugal.

scientific article published on 8 December 2005

Cryptococcus stepposus, a new filobasidiaceous yeast species found in the Prioksko-terrasny biosphere reserve in Russia

scientific article published on 10 August 2006

Cryptotrichosporon argae sp. nov., Cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

scientific article

Cuniculitrema polymorpha (Tremellales, gen. nov. and sp. nov.), a heterobasidiomycete vectored by bark beetles, which is the teleomorph of Sterigmatosporidium polymorphum.

scientific article

Curvibasidium cygneicollum gen. nov., sp. nov. and Curvibasidium pallidicorallinum sp. nov., novel taxa in the Microbotryomycetidae (Urediniomycetes), and their relationship with Rhodotorula fujisanensis and Rhodotorula nothofagi

scientific article

Cystobasidiomycetes yeasts from Patagonia (Argentina): description of Rhodotorula meli sp. nov. from glacial meltwater

scientific article

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from European Cold Environments and Arctic Region.

scientific article published on 5 May 2018

Cystofilobasidium lacus-mascardii sp. nov., a basidiomycetous yeast species isolated from aquatic environments of the Patagonian Andes, and Cystofilobasidium macerans sp. nov., the sexual stage of Cryptococcus macerans

scientific article

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

scientific article

Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species

scientific article published on 28 January 2020

Dynamics of yeast populations recovered from decaying leaves in a nonpolluted stream: a 2-year study on the effects of leaf litter type and decomposition time

scientific article

Evidence for divergent evolution of growth temperature preference in sympatric Saccharomyces species

scientific article

Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes.

scientific article

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

scientific article published on 18 January 2016

Evolution of Mating Systems in Basidiomycetes and the Genetic Architecture Underlying Mating-Type Determination in the Yeast Leucosporidium scottii.

scientific article

Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene

scientific article (publication date: June 2013)

Fermentation innovation through complex hybridization of wild and domesticated yeasts

scientific article published on 21 October 2019

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

scientific article

Genomics and the making of yeast biodiversity

scientific article published on 30 November 2015

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe.

scientific article

Hannaella floricola sp. nov., a novel basidiomycetous yeast species isolated from a flower of Lantana camara in Portugal

scientific article published in 2023

Heterocephalacria sinensis sp. nov., Phaeotremella lacus sp. nov. and Solicoccozyma aquatica sp. nov., three novel basidiomycetous yeast species isolated from crater lakes

scientific article

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

scientific article

Jaminaea phylloscopi sp. nov. (Microstromatales), a basidiomycetous yeast isolated from migratory birds in the Mediterranean basin

scientific article

Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils

scientific article

Local climatic adaptation in a widespread microorganism.

scientific article

Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome

scientific article published on 13 November 2015

Microbe Profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

scientific article published on 01 September 2018

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

scientific article

Molecular characterization of carotenogenic yeasts from aquatic environments in Patagonia, Argentina

scientific article published in January 2003

Moniliella sojae sp. nov., a species of black yeasts isolated from Vietnamese soy paste (tuong), and reassignment of Moniliella suaveolens strains to Moniliella pyrgileucina sp. nov., Moniliella casei sp. nov. and Moniliella macrospora emend. comb. n

scientific article published on 09 March 2018

Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication-The Case of Cachaça Yeasts

scientific article published on 01 August 2018

Mycogloea nipponica--the first known teleomorph in the heterobasidiomycetous yeast genus Kurtzmanomyces

scientific article published on 01 January 2003

Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus.

scientific article

New filobasidiaceous yeasts found in the phylloplane of a fern

scientific article published on 01 December 2009

New yeasts-new brews: modern approaches to brewing yeast design and development.

scientific article published on 4 June 2017

Occultifur mephitis f.a., sp. nov. and other yeast species from hypoxic and elevated CO 2 mofette environments

scientific article published on 29 May 2018

Occurrence and diversity of yeasts in the mid-atlantic ridge hydrothermal fields near the Azores Archipelago

scientific article

Papiliotrema plantarum sp. nov., a novel tremellaceous sexual yeast species.

scientific article published on 20 April 2018

Phaffia brasiliana sp. nov., a yeast species isolated from soil in a Cerrado–Atlantic Rain Forest ecotone site in Brazil

scholarly article published in 2021

Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota).

scientific article

Phylogenomic delineation of two new species of ascomycetous yeasts, Wickerhamiella koratensis sp. nov. and Wickerhamiella limtongiae sp. nov., and proposal of two synonyms, Wickerhamiella infanticola and Wickerhamiella tropicalis

scientific article published in 2024

Polyphasic taxonomy of the basidiomycetous yeast genus Rhodotorula: Rh. glutinis sensu stricto and Rh. dairenensis comb. nov.

scientific article published in March 2002

Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids.

scientific article published on 3 April 2014

Reappraisal of the Sporobolomyces roseus species complex and description of Sporidiobolus metaroseus sp. nov.

scientific article

Remarkably ancient balanced polymorphisms in a multi-locus gene network

scientific article (publication date: 4 March 2010)

Rhodotorula psychrophila sp. nov., Rhodotorula psychrophenolica sp. nov. and Rhodotorula glacialis sp. nov., novel psychrophilic basidiomycetous yeast species isolated from alpine environments

scientific article

Sex in the cold: taxonomic reorganization of psychrotolerant yeasts in the order Leucosporidiales.

scientific article published on 22 April 2015

Sporidiobolus longiusculus sp. nov. and Sporobolomyces patagonicus sp. nov., novel yeasts of the Sporidiobolales isolated from aquatic environments in Patagonia, Argentina

scientific article

Sporobolomyces agrorum sp. nov. and Sporobolomyces sucorum sp. nov., two novel basidiomycetous yeast species isolated from grape and apple must in Italy

scientific article published in November 2019

Starmera pilosocereana sp. nov., a yeast isolated from necrotic tissue of cacti in a sandy coastal dune ecosystem

scientific article

Studies on the heterogeneity of the carotenogenic yeast Rhodotorula mucilaginosa from Patagonia, Argentina.

scientific article

Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK).

scientific article

The Untapped Australasian Diversity of Astaxanthin-Producing Yeasts with Biotechnological Potential-Phaffia australis sp. nov. and Phaffia tasmanica sp. nov

scientific article published on 24 October 2020

The Wickerhamiella/Starmerella clade-A treasure trove for the study of the evolution of yeast metabolism

scientific article published on 26 February 2020

The diversity and extracellular enzymatic activities of yeasts isolated from water tanks of Vriesea minarum, an endangered bromeliad species in Brazil, and the description of Occultifur brasiliensis f.a., sp. nov.

scientific article

The dynamics of the yeast community of the Tagus river estuary: testing the hypothesis of the multiple origins of estuarine yeasts.

scientific article

The simple-septate basidiomycetes: a synopsis

article

Wickerhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds.

scientific article

Yamadazyma barbieri f.a. sp. nov., an ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (-2300 m) and marine coastal waters

scientific article

Yeast Diversity Associated with the Phylloplane of Corn Plants Cultivated in Thailand

scientific article published on 07 January 2020

Yeast diversity in the acidic Rio Agrio-Lake Caviahue volcanic environment (Patagonia, Argentina).

scientific article

Yeast diversity in the extreme acidic environments of the Iberian Pyrite Belt

scientific article

Yeasts from high-altitude lakes: influence of UV radiation

scientific article

Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to the cactus ecoclade

scientific article

Zygotorulaspora chibaensis sp. nov. and Zygotorulaspora danielsina sp. nov., novel ascomycetous yeast species from tree bark and soil

scientific article published on 22 June 2018

List of works by José Paulo Sampaio

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

A Quasi-Domesticate Relic Hybrid Population of Saccharomyces cerevisiae × S. paradoxus Adapted to Olive Brine.

A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete

A higher-level phylogenetic classification of the Fungi ⬇️

A population genomics insight into the Mediterranean origins of wine yeast domestication

Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.

Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites.

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences.

Application of temperature gradient gel electrophoresis to the study of yeast diversity in the estuary of the Tagus river, Portugal

Assessment of yeast diversity in a marine environment in the south of Portugal by microsatellite-primed PCR.

Auriculibuller fuscus gen. nov., sp. nov. and Bullera japonica sp. nov., novel taxa in the Tremellales

Biogeography, host specificity, and molecular phylogeny of the basidiomycetous yeast Phaffia rhodozyma and its sexual form, Xanthophyllomyces dendrorhous

Blastobotrys bombycis sp. nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva Bombyx mori

Candida oceani sp. nov., a novel yeast isolated from a Mid-Atlantic Ridge hydrothermal vent (-2300 meters).

Classification of heterobasidiomycetous yeasts: characteristics and affiliation of genera to higher taxa of heterobasidiomycetes.

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Cryolevonia gen. nov. and Cryolevonia schafbergensis sp. nov., a cryophilic yeast from ancient permafrost and melted sea ice

Cryptococcus agrionensis sp. nov., a basidiomycetous yeast of the acidic rock drainage ecoclade, isolated from an acidic aquatic environment of volcanic origin

Cryptococcus festucosus sp. nov. a new hymenomycetous yeast in the Holtermannia clade

Cryptococcus ibericus sp. nov., Cryptococcus aciditolerans sp. nov. and Cryptococcus metallitolerans sp. nov., a new ecoclade of anamorphic basidiomycetous yeast species from an extreme environment associated with acid rock drainage in Sao Domingo...

Cryptococcus nemorosus sp. nov. and Cryptococcus perniciosus sp. nov., related to Papiliotrema Sampaio et al. (Tremellales).

Cryptococcus paraflavus sp. nov. (Tremellales), isolated from steppe plants in Russia

Cryptococcus silvicola nov. sp. from nature reserves of Russia and Portugal.

Cryptococcus stepposus, a new filobasidiaceous yeast species found in the Prioksko-terrasny biosphere reserve in Russia

Cryptotrichosporon argae sp. nov., Cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

Cuniculitrema polymorpha (Tremellales, gen. nov. and sp. nov.), a heterobasidiomycete vectored by bark beetles, which is the teleomorph of Sterigmatosporidium polymorphum.

Curvibasidium cygneicollum gen. nov., sp. nov. and Curvibasidium pallidicorallinum sp. nov., novel taxa in the Microbotryomycetidae (Urediniomycetes), and their relationship with Rhodotorula fujisanensis and Rhodotorula nothofagi

Cystobasidiomycetes yeasts from Patagonia (Argentina): description of Rhodotorula meli sp. nov. from glacial meltwater

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from European Cold Environments and Arctic Region.

Cystofilobasidium lacus-mascardii sp. nov., a basidiomycetous yeast species isolated from aquatic environments of the Patagonian Andes, and Cystofilobasidium macerans sp. nov., the sexual stage of Cryptococcus macerans

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species

Dynamics of yeast populations recovered from decaying leaves in a nonpolluted stream: a 2-year study on the effects of leaf litter type and decomposition time

Evidence for divergent evolution of growth temperature preference in sympatric Saccharomyces species

Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes.

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

Evolution of Mating Systems in Basidiomycetes and the Genetic Architecture Underlying Mating-Type Determination in the Yeast Leucosporidium scottii.

Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene

Fermentation innovation through complex hybridization of wild and domesticated yeasts

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

Genomics and the making of yeast biodiversity

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe.

Hannaella floricola sp. nov., a novel basidiomycetous yeast species isolated from a flower of Lantana camara in Portugal

Heterocephalacria sinensis sp. nov., Phaeotremella lacus sp. nov. and Solicoccozyma aquatica sp. nov., three novel basidiomycetous yeast species isolated from crater lakes

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Jaminaea phylloscopi sp. nov. (Microstromatales), a basidiomycetous yeast isolated from migratory birds in the Mediterranean basin

Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils

Local climatic adaptation in a widespread microorganism.

Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome

Microbe Profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

Molecular characterization of carotenogenic yeasts from aquatic environments in Patagonia, Argentina

Moniliella sojae sp. nov., a species of black yeasts isolated from Vietnamese soy paste (tuong), and reassignment of Moniliella suaveolens strains to Moniliella pyrgileucina sp. nov., Moniliella casei sp. nov. and Moniliella macrospora emend. comb. n

Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication-The Case of Cachaça Yeasts

Mycogloea nipponica--the first known teleomorph in the heterobasidiomycetous yeast genus Kurtzmanomyces

Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus.

New filobasidiaceous yeasts found in the phylloplane of a fern

New yeasts-new brews: modern approaches to brewing yeast design and development.

Occultifur mephitis f.a., sp. nov. and other yeast species from hypoxic and elevated CO 2 mofette environments

Occurrence and diversity of yeasts in the mid-atlantic ridge hydrothermal fields near the Azores Archipelago

Papiliotrema plantarum sp. nov., a novel tremellaceous sexual yeast species.

Phaffia brasiliana sp. nov., a yeast species isolated from soil in a Cerrado–Atlantic Rain Forest ecotone site in Brazil

Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota).

Phylogenomic delineation of two new species of ascomycetous yeasts, Wickerhamiella koratensis sp. nov. and Wickerhamiella limtongiae sp. nov., and proposal of two synonyms, Wickerhamiella infanticola and Wickerhamiella tropicalis

Polyphasic taxonomy of the basidiomycetous yeast genus Rhodotorula: Rh. glutinis sensu stricto and Rh. dairenensis comb. nov.

Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids.

Reappraisal of the Sporobolomyces roseus species complex and description of Sporidiobolus metaroseus sp. nov.

Remarkably ancient balanced polymorphisms in a multi-locus gene network

Rhodotorula psychrophila sp. nov., Rhodotorula psychrophenolica sp. nov. and Rhodotorula glacialis sp. nov., novel psychrophilic basidiomycetous yeast species isolated from alpine environments

Sex in the cold: taxonomic reorganization of psychrotolerant yeasts in the order Leucosporidiales.

Sporidiobolus longiusculus sp. nov. and Sporobolomyces patagonicus sp. nov., novel yeasts of the Sporidiobolales isolated from aquatic environments in Patagonia, Argentina

Sporobolomyces agrorum sp. nov. and Sporobolomyces sucorum sp. nov., two novel basidiomycetous yeast species isolated from grape and apple must in Italy

Starmera pilosocereana sp. nov., a yeast isolated from necrotic tissue of cacti in a sandy coastal dune ecosystem

Studies on the heterogeneity of the carotenogenic yeast Rhodotorula mucilaginosa from Patagonia, Argentina.

Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK).

The Untapped Australasian Diversity of Astaxanthin-Producing Yeasts with Biotechnological Potential-Phaffia australis sp. nov. and Phaffia tasmanica sp. nov

The Wickerhamiella/Starmerella clade-A treasure trove for the study of the evolution of yeast metabolism

The diversity and extracellular enzymatic activities of yeasts isolated from water tanks of Vriesea minarum, an endangered bromeliad species in Brazil, and the description of Occultifur brasiliensis f.a., sp. nov.

The dynamics of the yeast community of the Tagus river estuary: testing the hypothesis of the multiple origins of estuarine yeasts.