List of works - Matthew J. Yoder

A gross anatomy ontology for hymenoptera

scientific article (publication date: 29 December 2010)

A hymenopterists’ guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions

scientific article

A monograph of the genus Westwoodia (Hymenoptera: Ichneumonidae) ⬇️

scientific article published on 22 August 2008

A phylogenetic analysis of the megadiverse Chalcidoidea (Hymenoptera) ⬇️

scientific article published on 4 January 2013

A secondary structural model of the 28S rRNA expansion segments D2 and D3 for Chalcidoid wasps (Hymenoptera: Chalcidoidea).

scientific article published on 20 April 2005

A semantic model for species description applied to the ensign wasps (hymenoptera: evaniidae) of New Caledonia

scientific article (publication date: September 2013)

An evaluation of ensign wasp classification (Hymenoptera: Evaniidae) based on molecular data and insights from ribosomal RNA secondary structure

scholarly article by Andrew R. Deans et al published 13 March 2006 in Systematic Entomology

Are Software Standards possible for Biodiversity, and What Would They Mean to the Fractured Landscape of Biodiversity Virtual Research Environments?

scientific article published on 26 June 2019

Co-designing Scientific Software

Current progress in the development of taxonomic and anatomical ontologies within the scope of BIOfid

scientific article published in 2018

Design and use of NOMEN, an ontology defining the rules of biological nomenclature

scientific article published in 2017

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

scientific article published on 13 March 2019

Driving Data and Human Ecosystem Change: Integrating Expertise and Agency

scientific article published in 2024

Enhanced monography in a collaboratively evolved hub for systematic biology

scientific article published on 27 January 2022

Exploring and Reconstructing Ancestral Anatomies using Ontology-Informed Approaches

scientific article published in 2019

Finding our way through phenotypes

scientific article

Folding wings like a cockroach: a review of transverse wing folding ensign wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania)

scientific article

History Extended: Migration of Systema Dipterorum into TaxonWorks

scientific article published in 2024

Identity and synonymy of Dicroscelio Kieffer and description of Axea, a new genus from tropical Africa and Asia (Hymenoptera: Platygastroidea: Platygastridae) ⬇️

scientific article published on 5 February 2009

Malagasy Conostigmus (Hymenoptera: Ceraphronoidea) and the secret of scutes

scientific article

Male terminalia of Ceraphronoidea: morphological diversity in an otherwise monotonous taxon

scientific article published in January 2013

Mannomicrus (Hymenoptera: Diapriidae), a new genus of myrmecophilic diapriid, with a digital version of Masner and García's (2002) key to New World Diapriinae and an illustration of digital description and key markup using an ontology

scientific article (publication date: 2 April 2007)

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

scientific article published on 9 January 2013

Meeting In-Between: Moving beyond the buzz, bottlenecks, and bubble to collaboratively develop digitization tooling

scientific article published in 2020

Monograph of the Afrotropical species of Scelio Latreille (Hymenoptera, Platygastridae), egg parasitoids of acridid grasshoppers (Orthoptera, Acrididae)

scientific article

Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

scientific article published on 26 September 2009

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis ⬇️

scientific article published on May 26, 2012

Nomenclature over 5 years in TaxonWorks: Approach, implementation, limitations and outcomes

scientific article published in 2021

On dorsal prothoracic appendages in treehoppers (Hemiptera: Membracidae) and the nature of morphological evidence

scientific article published in 2012

Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation

scientific article published on 14 July 2005

Relationships of Exodontiella, a non-alysiine, exodont member of the family Braconidae (Insecta, Hymenoptera)

article

Revision of Scelio pulchripennis - group species (Hymenoptera, Platygastroidea, Platygastridae)

scientific article

Revision of the North American species of the genus Entomacis (Hymenoptera: Diapriidae)

Self-publishing Biodiversity Data Products on the Web

scientific article published in 2022

Specimens, Databases, and Accession Books: Using TaxonWorks to Integrate Multiple Sources of Modern and Historical Data in the INHS Insect Collection

article by Thomas C. McElrath et al published 15 June 2018 in Biodiversity Information Science and Standards

Sustainability in Biodiversity Software Development: More financing or better practices?

article

TaxonWorks

scientific article published in 2017

TaxonWorks 1.0?

scientific article published in 2019

TaxonWorks in its 10th Year: What’s new, what’s next?

scientific article published in 2023

TaxonWorks: A Use Case in Documenting Complex Biological Relationships

scientific article published in 2018

TaxonWorks: Character state matrices and identification tools

scientific article published in 2021

The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

scientific article published on 2 November 2023

The first organ-based free ontology for arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its integration into a novel formalization scheme for morphological descriptions.

scientific article published on 25 January 2017

Time to change how we describe biodiversity

scientific article

Transforming the study of organisms: Phenomic data models and knowledge bases

scientific article published on 24 November 2020

Utilizing descriptive statements from the biodiversity heritage library to expand the Hymenoptera Anatomy Ontology

scientific article

WCO-Lite version 1.1: an online nomenclatural catalogue of harvestmen of the world (Arachnida, Opiliones) curated in TaxonWorks

scientific article

Wet collections accession: a workflow based on a large stonefly (Insecta, Plecoptera) donation

scientific article published on 07 December 2018

What Can You Do with a TaxonWorks API?

scientific article published in 2020

List of works by Matthew J. Yoder

A gross anatomy ontology for hymenoptera

A hymenopterists’ guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions

A monograph of the genus Westwoodia (Hymenoptera: Ichneumonidae) ⬇️

A phylogenetic analysis of the megadiverse Chalcidoidea (Hymenoptera) ⬇️

A secondary structural model of the 28S rRNA expansion segments D2 and D3 for Chalcidoid wasps (Hymenoptera: Chalcidoidea).

A semantic model for species description applied to the ensign wasps (hymenoptera: evaniidae) of New Caledonia

An evaluation of ensign wasp classification (Hymenoptera: Evaniidae) based on molecular data and insights from ribosomal RNA secondary structure

Are Software Standards possible for Biodiversity, and What Would They Mean to the Fractured Landscape of Biodiversity Virtual Research Environments?

Co-designing Scientific Software

Current progress in the development of taxonomic and anatomical ontologies within the scope of BIOfid

Design and use of NOMEN, an ontology defining the rules of biological nomenclature

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

Driving Data and Human Ecosystem Change: Integrating Expertise and Agency

Enhanced monography in a collaboratively evolved hub for systematic biology

Exploring and Reconstructing Ancestral Anatomies using Ontology-Informed Approaches

Finding our way through phenotypes

Folding wings like a cockroach: a review of transverse wing folding ensign wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania)

History Extended: Migration of Systema Dipterorum into TaxonWorks

Identity and synonymy of Dicroscelio Kieffer and description of Axea, a new genus from tropical Africa and Asia (Hymenoptera: Platygastroidea: Platygastridae) ⬇️

Malagasy Conostigmus (Hymenoptera: Ceraphronoidea) and the secret of scutes

Male terminalia of Ceraphronoidea: morphological diversity in an otherwise monotonous taxon

Mannomicrus (Hymenoptera: Diapriidae), a new genus of myrmecophilic diapriid, with a digital version of Masner and García's (2002) key to New World Diapriinae and an illustration of digital description and key markup using an ontology

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

Meeting In-Between: Moving beyond the buzz, bottlenecks, and bubble to collaboratively develop digitization tooling

Monograph of the Afrotropical species of Scelio Latreille (Hymenoptera, Platygastridae), egg parasitoids of acridid grasshoppers (Orthoptera, Acrididae)

Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis ⬇️

Nomenclature over 5 years in TaxonWorks: Approach, implementation, limitations and outcomes

On dorsal prothoracic appendages in treehoppers (Hemiptera: Membracidae) and the nature of morphological evidence

Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation

Relationships of Exodontiella, a non-alysiine, exodont member of the family Braconidae (Insecta, Hymenoptera)

Revision of Scelio pulchripennis - group species (Hymenoptera, Platygastroidea, Platygastridae)

Revision of the North American species of the genus Entomacis (Hymenoptera: Diapriidae)

Self-publishing Biodiversity Data Products on the Web

Specimens, Databases, and Accession Books: Using TaxonWorks to Integrate Multiple Sources of Modern and Historical Data in the INHS Insect Collection

Sustainability in Biodiversity Software Development: More financing or better practices?

TaxonWorks

TaxonWorks 1.0?

TaxonWorks in its 10th Year: What’s new, what’s next?

TaxonWorks: A Use Case in Documenting Complex Biological Relationships

TaxonWorks: Character state matrices and identification tools

The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

The first organ-based free ontology for arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its integration into a novel formalization scheme for morphological descriptions.

Time to change how we describe biodiversity

Transforming the study of organisms: Phenomic data models and knowledge bases

Utilizing descriptive statements from the biodiversity heritage library to expand the Hymenoptera Anatomy Ontology

WCO-Lite version 1.1: an online nomenclatural catalogue of harvestmen of the world (Arachnida, Opiliones) curated in TaxonWorks

Wet collections accession: a workflow based on a large stonefly (Insecta, Plecoptera) donation

What Can You Do with a TaxonWorks API?