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List of works by François Lutzoni

A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)

scientific article published on 17 July 2015

A five-gene phylogeny of Pezizomycotina

scientific article

A higher-level phylogenetic classification of the Fungi ⬇️

scientific article

A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

scientific article

A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?

scientific article

Align or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study ⬇️

scientific article published on December 7, 2010

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

scientific article (publication date: October 2004)

Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungusPeltigera

article

Assessing population structure and host specialization in lichenized cyanobacteria ⬇️

scientific article published on February 13, 2013

Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera

scientific article

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

scientific article

Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates

scientific article published on 2 September 2016

Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens

scientific article

Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon

scientific article published on 28 August 2017

Contemporaneous radiations of fungi and plants linked to symbiosis

scientific article published in Nature Communications

Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus

article published in 2018

Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory

scientific article

Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota).

scientific article

Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America

scientific article published in 2008

Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada

scientific article

Disentangling the Collema-Leptogium complex through a molecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota).

scientific article published in March 2010

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.

scientific article

Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

scientific article published on 22 April 2016

Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae

scientific article

Evidence for sexuality in the opportunistic fungal pathogen Aspergillus fumigatus

scientific article

Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease

scientific article published on 8 February 2007

Expansion of the Stictidaceae by the addition of the saxicolous lichen-forming genusIngvariella ⬇️

scientific article published on April 6, 2011

Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota).

scientific article

Fungal and algal gene expression in early developmental stages of lichen-symbiosis

scientific article

Generic Classification of the Verrucariaceae (Ascomycota) Based on Molecular and Morphological Evidence: Recent Progress and Remaining Challenges ⬇️

scientific article published on February 2009

Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species

scientific article

High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family ⬇️

scientific article published on April 4, 2013

Host and geographic structure of endophytic and endolichenic fungi at a continental scale ⬇️

scientific article published on April 26, 2012

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

scientific article published on 23 September 2019

Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure

scholarly article by Jolanta Miądlikowska et al published June 2011 in The Bryologist

Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

scientific article

Is vanadium a biometal for boreal cyanolichens?

scientific article published on 18 March 2014

Lichens

scientific article published on 01 July 2009

Low genetic variation and no detectable population structure in aspergillus fumigatus compared to closely related Neosartorya species

scientific article

Molecular phylogeny and systematics of Polyblastia (Verrucariaceae, Eurotiomycetes) and allied genera

scholarly article by Sanja Savić et al published November 2008 in Mycological Research

Molecular phylogeny of Heteroplacidium, Placidium, and related catapyrenioid genera (Verrucariaceae, lichen-forming Ascomycota).

scientific article published on 30 December 2011

Multi-locus phylogeny supports the placement of Endocarpon pulvinatum within Staurothele s. str. (lichenised ascomycetes, Eurotiomycetes, Verrucariaceae)

article

Multiple Horizontal Gene Transfers of Ammonium Transporters/Ammonia Permeases from Prokaryotes to Eukaryotes: Toward a New Functional and Evolutionary Classification ⬇️

scientific article published on June 16, 2011

Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes).

scientific article published on 20 May 2010

New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex

scientific article

New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes

scientific article

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome ⬇️

scientific article published on September 12, 2011

Phylogenetic Relationships and Taxonomy of the Leptogium lichenoides Group (Collemataceae, Ascomycota) in Europe

scientific article published on August 2008

Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota).

scientific article published on 3 June 2011

Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales

scientific article published on 17 February 2015

Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA.

scientific article

Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits ⬇️

scientific article published on March 1, 2004

Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota).

scientific article

Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence

scientific article published on December 2010

Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes).

scientific article

Phylogenetic reassessment of the Teloschistaceae (lichen-forming Ascomycota, Lecanoromycetes).

scientific article published on 22 November 2007

Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages

scientific article published on 26 July 2006

Phylogenetic study of Catapyrenium s. str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis

scientific article published in March 2010

Phylogenetic study of Diploschistes (lichen-forming Ascomycota: Ostropales: Graphidaceae), based on morphological, chemical, and molecular data

scientific article (publication date: 20 April 2013)

Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits

scientific article published in October 2002

Reconstructing the early evolution of Fungi using a six-gene phylogeny ⬇️

scientific article

Single origin and subsequent diversification of central Andean endemic Umbilicaria species.

scientific article

Slow algae, fast fungi: exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa ⬇️

scientific article published on December 1, 2003

Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes)

article

T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

scientific article published on 18 July 2019

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

scientific article published on 21 December 2016

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

scientific article

The Evolution of Homing Endonuclease Genes and Group I Introns in Nuclear rDNA ⬇️

scientific article published on October 31, 2003

The Lichen Genus Sticta in the Great Smoky Mountains: A Phylogenetic Study of Morphological, Chemical, and Molecular Data

scholarly article by Tami McDonald et al published March 2003 in The Bryologist

The adaptive radiation of lichen-forming Teloschistaceae is associated with sunscreening pigments and a bark-to-rock substrate shift

scientific article

The search for the fungal tree of life

scientific article published on 24 September 2009

Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha

scientific article

Using a multigene phylogenetic analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota). ⬇️

scientific article

WASABI: an automated sequence processing system for multigene phylogenies

scientific article published in June 2007

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