Search filters

List of works by Robb T. Brumfield

A Highly Contiguous Reference Genome for Northern Bobwhite (Colinus virginianus)

scientific article published on 03 December 2019

A NEW SPECIES OF THAMNOPHILUS ANTSHRIKE (AVES: THAMNOPHILIDAE) FROM THE SERRA DO DIVISOR, ACRE, BRAZIL

article

A Phylogenomic Supertree of Birds

scientific article published on 10 July 2019

A latitudinal phylogeographic diversity gradient in birds.

scientific article

A phylogenetic approach to disentangling the role of competition and habitat filtering in community assembly of Neotropical forest birds

scientific article published in November 2010

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

scientific article published in 2013

A revised classification of the Xolmiini (Aves: Tyrannidae: Fluvicolinae), including a new genus for Muscisaxicola fluviatilis

scientific article published on 29 May 2020

Academy of Natural Sciences: Job Cuts

scientific article published on 01 March 2005

Academy of Natural Sciences: job cuts

scientific article published on 01 March 2005

Adaptation to ephemeral habitat may overcome natural barriers and severe habitat fragmentation in a fire-dependent species, the Bachman's Sparrow (Peucaea aestivalis).

scientific article

Adaptive processes drive ecomorphological convergent evolution in antwrens (Thamnophilidae).

scientific article

Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow

scientific article published in 2023

Applications of next-generation sequencing to phylogeography and phylogenetics

scientific article

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

Behavioural response to song and genetic divergence in two subspecies of white-crowned sparrows (Zonotrichia leucophrys).

scientific article

Biogeography of a neotropical songbird radiation reveals similar diversification dynamics between montane and lowland clades

scientific article published in 2022

CLINAL VARIATION IN VOCALIZATIONS OF AN ANTBIRD (THAMNOPHILIDAE) AND IMPLICATIONS FOR DEFINING SPECIES LIMITS

scientific article published in 2005

Certhiasomus, a new genus of woodcreeper (Aves: Passeriformes: Dendrocolaptidae) ⬇️

scientific article published in April 2010

Characterization of microsatellite loci for a threatened species, the King Rail, Rallus elegans, using a next-generation sequencing protocol

article by Carol L. Brackett et al published 9 July 2013 in Conservation Genetics Resources

Comment on "Molecular phylogenies link rates of evolution and speciation" (I).

scientific article

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

scientific article

Correction: A latitudinal phylogeographic diversity gradient in birds

scientific article published on 14 July 2017

Correlated evolution of beak morphology and song in the neotropical woodcreeper radiation

scientific article

Corrigendum to "Phylogeography of the Variable Antshrike (Thamnophilus caerulescens), a South American passerine distributed along multiple environmental gradients" [Mol. Phylogenet. Evol. 148 (2020) 106810]

scientific article published on 26 June 2020

Corrigendum to “Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences” [Mol. Phylogenet. Evol. 62 (2012) 397–406]

scholarly article published in Molecular Phylogenetics and Evolution

DNA sequence data reveal a subfamily-level divergence within Thamnophilidae (Aves: Passeriformes).

scientific article

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Diversification history in the Dendrocincla fuliginosa complex (Aves: Dendrocolaptidae): Insights from broad geographic sampling

scientific article published on 17 August 2019

Earth history and the passerine superradiation

scientific article published on 01 April 2019

Ecological drivers of song evolution in birds: Disentangling the effects of habitat and morphology.

scientific article published on 13 January 2018

Ecological opportunity and diversification in a continental radiation of birds: climbing adaptations and cladogenesis in the Furnariidae

scientific article

Ecology Predicts Levels of Genetic Differentiation in Neotropical Birds

scientific article published in 2009

Ecology predicts levels of genetic differentiation in neotropical birds

scientific article

Epinecrophylla, a new genus of antwrens (Aves: Passeriformes: Thamnophilidae)

scientific article published on 22 December 2006

Estimating species trees using multiple-allele DNA sequence data

scientific article

Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes

scientific article published in February 2007

Evolutionary dynamics of hybridization and introgression following the recent colonization of Glossy Ibis (Aves: Plegadis falcinellus) into the New World

scientific article published on 10 April 2019

Exploring Conflicts in Whole Genome Phylogenetics: A Case Study Within Manakins (Aves: Pipridae)

scientific article published in 2022

Extensive paraphyly in the typical owl family (Strigidae)

scientific article (publication date: 2 January 2020)

Fifteen polymorphic microsatellite loci from Jamaican streamertail hummingbirds (Trochilus)

Fifty shades of brown: Macroevolution of plumage brightness in the Furnariida, a large clade of drab Neotropical passerines

scientific article published on 14 March 2019

Fourfold polyphyly of the genus formerly known as Upucerthia, with notes on the systematics and evolution of the avian subfamily Furnariinae.

scientific article

Future of Avian Genetic Resources Collections: Archives of Evolutionary and Environmental History

article published in 2005

Gene sampling strategies for multi-locus population estimates of genetic diversity (theta).

scientific article published on 17 January 2007

Genetic Differentiation and Taxonomy in the House Wren Species Group

scholarly article published in The Condor in August 1996

Genomic insights into adaptation to high-altitude environments

scientific article published on 21 September 2011

Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

scientific article

Geocerthia, a new genus of terrestrial ovenbird (Aves: Passeriformes: Furnariidae) ⬇️

scientific article published on 28 August 2009

Geographic variation and phylogenetic relationships of Myiopagis olallai (Aves: Passeriformes; Tyrannidae), with the description of two new taxa from the Northern Andes

scientific article (publication date: 14 October 2014)

HZAR: hybrid zone analysis using an R software package

scientific article

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds.

scientific article published on 11 September 2017

Haldane's rule in an avian system: using cline theory and divergence population genetics to test for differential introgression of mitochondrial, autosomal, and sex-linked loci across the Passerina bunting hybrid zone

scientific article

High dispersal ability inhibits speciation in a continental radiation of passerine birds

scientific article (publication date: 22 April 2012)

Historical Diversification of Birds in Northwestern South America: A Molecular Perspective on the Role of Vicariant Events

Historical divergence and gene flow: coalescent analyses of mitochondrial, autosomal and sex-linked loci in Passerina buntings

scientific article

Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Host feeding patterns of Culex mosquitoes (Diptera: Culicidae) in East Baton Rouge Parish, Louisiana

scientific article published in March 2010

Implications of headwater contact zones for the riverine barrier hypothesis: a case study of the Blue-capped Manakin (<i>Lepidothrix coronata</i>)

scientific article published on 20 October 2023

Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings

scientific article published in January 2008

Inundicola Bravo, Isler, and Brumfield 2013 is a junior synonym of Akletos Dunajewski 1948 (Aves: Passeriformes: Thamnophilidae)

scientific article (publication date: 17 March 2014)

Investigating the utility of traditional and genomic multi-locus datasets to resolve relationships in Lipaugus and Tijuca (Cotingidae)

scientific article published on 02 March 2020

Lineage diversification and morphological evolution in a large-scale continental radiation: the neotropical ovenbirds and woodcreepers (aves: Furnariidae).

scientific article

MITOCHONDRIAL VARIATION IN BOLIVIAN POPULATIONS OF THE VARIABLE ANTSHRIKE (THAMNOPHILUS CAERULESCENS)

scientific article published in 2005

Migration-selection balance and local adaptation of mitochondrial haplotypes in rufous-collared sparrows (Zonotrichia capensis) along an elevational gradient

scientific article

Mitochondrial and Next-Generation Sequence Data Used to Infer Phylogenetic Relationships and Species Limits in the Clapper/King Rail Complex

article by James M. Maley & Robb T. Brumfield published May 2013 in The Condor

Mitochondrial genomes and thousands of ultraconserved elements resolve the taxonomy and historical biogeography of the Euphonia and Chlorophonia finches (Passeriformes: Fringillidae) ⬇️

scientific article

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs ⬇️

scientific article

Multiple species and deep genomic divergences despite little phenotypic differentiation in an ancient Neotropical songbird, Tunchiornis ochraceiceps (Sclater, 1860) (Aves: Vireonidae)

scientific article published on 18 May 2021

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

scientific article

Niche evolution and diversification in a Neotropical radiation of birds (Aves: Furnariidae).

scientific article

Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae).

scientific article published on 29 March 2012

PHYLOGENETIC RELATIONSHIPS IN BEARDED MANAKINS (PIPRIDAE: MANACUS) INDICATE THAT MALE PLUMAGE COLOR IS A MISLEADING TAXONOMIC MARKER1

scientific article published in 2001

PRGmatic: an efficient pipeline for collating genome‐enriched second‐generation sequencing data using a ‘provisional‐reference genome’ ⬇️

scientific article published on March 24, 2011

Phylogenetic Relationships of the White-Throated Barbtail,Premnoplex tatei(Furnariidae), an Endemic of the Northeastern Mountain Range of Venezuela

scientific article published in 2010

Phylogenetic and ecological determinants of the neotropical dawn chorus

scientific article published in April 2006

Phylogenetic conservatism and antiquity of a tropical specialization: army-ant-following in the typical antbirds (Thamnophilidae).

scientific article

Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi ⬇️

scientific article

Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness

scientific article published on 17 November 2020

Phylogeny and Classification ofAutomolusFoliage-gleaners and Allies (Furnariidae)

scholarly article published in The Condor in May 2013

Phylogeny and comparative phylogeography of Sclerurus (Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists

scholarly article by Fernando M. d'Horta et al published 20 September 2012 in Journal of Biogeography

Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: infraorder Furnariides)

article

Phylogeographic and demographic history of the Variable Anthsrike (Thamnophilidae: Thamnophilus caerulescens), a widespread South American passerine distributed along multiple environmental gradients

scientific article published on 05 April 2020

Polyphyly ofCampylorhamphus, and Description of a New Genus forC. pucherani(Dendrocolaptinae)

scientific article (publication date: April 2010)

Positive association between population genetic differentiation and speciation rates in New World birds

scientific article

Pseudasthenes, a new genus of ovenbird (Aves: Passeriformes: Furnariidae) ⬇️

scientific article published in April 2010

Rampant polyphyly indicates cryptic diversity in a clade of Neotropical flycatchers (Aves: Tyrannidae)

scientific article published on 28 February 2013

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater).

scientific article

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics

scientific article

Sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R) is not associated with plumage variation in the blue-crowned manakin (Lepidothrix coronata)

article

Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species

scientific article published on 21 April 2015

Song divergence by sensory drive in Amazonian birds

scientific article published on 19 August 2010

Speciation genetics of biological invasions with hybridization ⬇️

scientific article published on December 1, 2010

Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation

scientific article

Species coexistence and the dynamics of phenotypic evolution in adaptive radiation

scientific article

Systematics and biogeography of the Automolus infuscatus complex (Aves; Furnariidae): Cryptic diversity reveals western Amazonia as the origin of a transcontinental radiation

scientific article

Systematics of the obligate ant-following clade of antbirds (Aves: Passeriformes: Thamnophilidae)

Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds ⬇️

scientific article

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

scientific article

Tarphonomus, a new genus of ovenbird (Aves: Passeriformes: Furnariidae) from South America

article

Taxonomic revision of Myrmeciza (Aves: Passeriformes: Thamnophilidae) into 12 genera based on phylogenetic, morphological, behavioral, and ecological data

scientific article (publication date: October 2013)

The Mouse-colored Tyrannulet (Phaeomyias murina) is a species complex that includes the Cocos Flycatcher (Nesotriccus ridgwayi), an island form that underwent a population bottleneck

scientific article

The drivers of tropical speciation

scientific article

The dual role of Amazonian rivers in the generation and maintenance of avian diversity

scientific article published on 01 August 2018

The effect of marker choice on estimated levels of introgression across an avian (Pipridae: Manacus) hybrid zone

scientific article

The evolution of a tropical biodiversity hotspot

scientific article

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins.

scientific article published on 26 February 2013

The influence of the complex topography and dynamic history of the montane Neotropics on the evolutionary differentiation of a cloud forest bird (Premnoplex brunnescens, Furnariidae)

The need for proper vouchering in phylogenetic studies of birds

article

The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia

scientific article

The utility of single nucleotide polymorphisms in inferences of population history

article by Robb T. Brumfield et al published May 2003 in Trends in Ecology & Evolution

Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient

scientific article

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

scientific article

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

scientific article (publication date: April 2012)

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Paulina is supported by:

About Paulina

Help