List of works - Rüdiger Pukall

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article

Abundance and diversity of microbial inhabitants in European spacecraft-associated clean rooms

scientific article

Acaricomes phytoseiuli gen. nov., sp. nov., isolated from the predatory mite Phytoseiulus persimilis

scientific article published in February 2006

Agrococcus carbonis sp. nov., isolated from soil of a coal mine

scientific article

Arylomycins A and B, new biaryl-bridged lipopeptide antibiotics produced by Streptomyces sp. Tü 6075. I. Taxonomy, fermentation, isolation and biological activities. ⬇️

scientific article

Bacillus glennii sp. nov. and Bacillus saganii sp. nov., isolated from the vehicle assembly building at Kennedy Space Center where the Viking spacecraft were assembled

scientific article

Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor

scientific article

Bacteriolytic Bacillus species isolated from brackish waters of the Southern Baltic Sea

article

Bifidobacterium reuteri sp. nov., Bifidobacterium callitrichos sp. nov., Bifidobacterium saguini sp. nov., Bifidobacterium stellenboschense sp. nov. and Bifidobacterium biavatii sp. nov. isolated from faeces of common marmoset (Callithrix jacchus) a

scientific article

Carbon source utilization patterns of Bacillus simplex ecotypes do not reflect their adaptation to ecologically divergent slopes in 'Evolution Canyon', Israel

scientific article published on 27 August 2008

Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity--description of Paenibacillus uliginis sp. nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp. nov., isolated from a

scientific article published in September 2010

Complete genome sequence of Acidaminococcus fermentans type strain (VR4).

scientific article

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)

scientific article

Complete genome sequence of Anaerococcus prevotii type strain (PC1).

scientific article

Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

scientific article

Complete genome sequence of Atopobium parvulum type strain (IPP 1246)

scientific article

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

scientific article

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).

scientific article

Complete genome sequence of Cellulomonas flavigena type strain (134).

scientific article

Complete genome sequence of Conexibacter woesei type strain (ID131577).

scientific article

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

scientific article

Complete genome sequence of Cryptobacterium curtum type strain (12-3)

scientific article

Complete genome sequence of Deinococcus maricopensis type strain (LB-34). ⬇️

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).

scientific article

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). ⬇️

scientific article

Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

scientific article

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134)

scientific article

Complete genome sequence of Kribbella flavida type strain (IFO 14399).

scientific article

Complete genome sequence of Kytococcus sedentarius type strain (541).

scientific article

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

scientific article

Complete genome sequence of Olsenella uli type strain (VPI D76D-27C)

scientific article

Complete genome sequence of Sanguibacter keddieii type strain (ST-74)

scientific article

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

scientific article

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

scientific article

Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

scientific article

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07)

scientific article

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

scientific article published on 20 July 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

scientific article

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and

scientific article

Deinococcus phoenicis sp. nov., an extreme ionizing-radiation-resistant bacterium isolated from the Phoenix Lander assembly facility

scientific article from IJSEM published in October 2014

Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt

scientific article

Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina

scientific article

Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments

scientific article from IJSEM published in July 2013

Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues

scientific article

Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates

scientific article

Discovery of complex mixtures of novel long-chain quorum sensing signals in free-living and host-associated marine alphaproteobacteria

scientific article

Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

scientific article published on 15 June 2010

Exiguobacterium mexicanum sp. nov. and Exiguobacterium artemiae sp. nov., isolated from the brine shrimp Artemia franciscana

scientific article

Friedmanniella

scientific article published in 2015

Genome-Based Taxonomic Classification of the Phylum

article published in 2018

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

scientific article

Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia

scientific article

Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov.

scientific article

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum

scientific article

High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass

scientific article published on 8 May 2015

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community

scientific article published on 19 October 2017

Hoeflea phototrophica sp. nov., a novel marine aerobic alphaproteobacterium that forms bacteriochlorophyll a.

scientific article

Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea

scientific article (publication date: May 2003)

Kribbella shirazensis sp. nov., isolated from Iranian soil

scientific article

Kurthia

scientific article published in 2015

Lactobacillus apodemi sp. nov., a tannase-producing species isolated from wild mouse faeces

scientific article

Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum

scientific article published in November 2005

Leucobacter chironomi sp. nov., a chromate-resistant bacterium isolated from a chironomid egg mass

scientific article

Leucobacter iarius sp. nov., in the family Microbacteriaceae

scientific article

Leucobacter weissii sp. nov., an isolate from activated sludge once described as first representative of the peptidoglycan variation B2δ, and emended description of the genus Leucobacter

scientific article

Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission

scientific article published on 25 October 2017

Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum ⬇️

scientific article published on January 27, 2012

Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant ⬇️

scientific article published on March 15, 2013

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.

scientific article

Myceligenerans xiligouense gen. nov., sp. nov., a novel hyphae-forming member of the family Promicromonosporaceae

scientific article

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

scientific article

Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites

scientific article

Paenibacillus residui sp. nov., isolated from urban waste compost

scientific article

Paracoccus seriniphilus sp. nov., an L-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa

scientific article

Peptoniphilus methioninivorax sp. nov., a Gram-positive anaerobic coccus isolated from retail ground beef

scientific article

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments

scientific article

Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinoba

scientific article published in 2021

Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 ...

scientific article (publication date: June 2006)

Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete

scientific article

Roseovarius mucosus sp. nov., a member of the Roseobacter clade with trace amounts of bacteriochlorophyll a.

scientific article

Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China

scientific article

Secondary metabolites of Flustra foliacea and their influence on bacteria.

scientific article

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

scientific article published on 11 February 2013

Streptococcus merionis sp. nov., isolated from Mongolian jirds (Meriones unguiculatus).

scientific article

Terpenoids are widespread in actinomycetes: a correlation of secondary metabolism and genome data

scientific article

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 8 August 2016

The Use of MALDI-TOF Mass Spectrometry, Ribotyping and Phenotypic Tests to Identify Lactic Acid Bacteria from Fermented Cereal Foods in Abidjan (Côte d'Ivoire).

scientific article

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

scientific article published on 10 September 2009

The discriminatory power of ribotyping as automatable technique for differentiation of bacteria

scientific article published on July 2013

The first collection of spacecraft-associated microorganisms: a public source for extremotolerant microorganisms from spacecraft assembly clean rooms

scientific article

The responses of an anaerobic microorganism, Yersinia intermedia MASE-LG-1 to individual and combined simulated Martian stresses

scientific article published on 25 October 2017

Toxin-producing ability among Bacillus spp. outside the Bacillus cereus group

scientific article published on March 2005

Yaniella fodinae sp. nov., isolated from a coal mine

scientific article

List of works by Rüdiger Pukall

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Abundance and diversity of microbial inhabitants in European spacecraft-associated clean rooms

Acaricomes phytoseiuli gen. nov., sp. nov., isolated from the predatory mite Phytoseiulus persimilis

Agrococcus carbonis sp. nov., isolated from soil of a coal mine

Arylomycins A and B, new biaryl-bridged lipopeptide antibiotics produced by Streptomyces sp. Tü 6075. I. Taxonomy, fermentation, isolation and biological activities. ⬇️

Bacillus glennii sp. nov. and Bacillus saganii sp. nov., isolated from the vehicle assembly building at Kennedy Space Center where the Viking spacecraft were assembled

Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor

Bacteriolytic Bacillus species isolated from brackish waters of the Southern Baltic Sea

Bifidobacterium reuteri sp. nov., Bifidobacterium callitrichos sp. nov., Bifidobacterium saguini sp. nov., Bifidobacterium stellenboschense sp. nov. and Bifidobacterium biavatii sp. nov. isolated from faeces of common marmoset (Callithrix jacchus) a

Carbon source utilization patterns of Bacillus simplex ecotypes do not reflect their adaptation to ecologically divergent slopes in 'Evolution Canyon', Israel

Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity--description of Paenibacillus uliginis sp. nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp. nov., isolated from a

Complete genome sequence of Acidaminococcus fermentans type strain (VR4).

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)

Complete genome sequence of Anaerococcus prevotii type strain (PC1).

Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

Complete genome sequence of Atopobium parvulum type strain (IPP 1246)

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).

Complete genome sequence of Cellulomonas flavigena type strain (134).

Complete genome sequence of Conexibacter woesei type strain (ID131577).

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

Complete genome sequence of Cryptobacterium curtum type strain (12-3)

Complete genome sequence of Deinococcus maricopensis type strain (LB-34). ⬇️

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). ⬇️

Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134)

Complete genome sequence of Kribbella flavida type strain (IFO 14399).

Complete genome sequence of Kytococcus sedentarius type strain (541).

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

Complete genome sequence of Olsenella uli type strain (VPI D76D-27C)

Complete genome sequence of Sanguibacter keddieii type strain (ST-74)

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07)

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and

Deinococcus phoenicis sp. nov., an extreme ionizing-radiation-resistant bacterium isolated from the Phoenix Lander assembly facility

Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt

Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina

Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments

Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues

Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates

Discovery of complex mixtures of novel long-chain quorum sensing signals in free-living and host-associated marine alphaproteobacteria

Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

Exiguobacterium mexicanum sp. nov. and Exiguobacterium artemiae sp. nov., isolated from the brine shrimp Artemia franciscana

Friedmanniella

Genome-Based Taxonomic Classification of the Phylum

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia

Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov.

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum

High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community

Hoeflea phototrophica sp. nov., a novel marine aerobic alphaproteobacterium that forms bacteriochlorophyll a.

Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea

Kribbella shirazensis sp. nov., isolated from Iranian soil

Kurthia

Lactobacillus apodemi sp. nov., a tannase-producing species isolated from wild mouse faeces

Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum

Leucobacter chironomi sp. nov., a chromate-resistant bacterium isolated from a chironomid egg mass

Leucobacter iarius sp. nov., in the family Microbacteriaceae

Leucobacter weissii sp. nov., an isolate from activated sludge once described as first representative of the peptidoglycan variation B2δ, and emended description of the genus Leucobacter

Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission

Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum ⬇️

Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant ⬇️

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.

Myceligenerans xiligouense gen. nov., sp. nov., a novel hyphae-forming member of the family Promicromonosporaceae

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites

Paenibacillus residui sp. nov., isolated from urban waste compost

Paracoccus seriniphilus sp. nov., an L-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa

Peptoniphilus methioninivorax sp. nov., a Gram-positive anaerobic coccus isolated from retail ground beef

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments

Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinoba

Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 ...