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List of works by Rytas J. Vilgalys

(1473-1474) Proposals to Conserve the Name Psathyrella (Fr.) Quél. with a Conserved Type and to Reject the Name Pselliophora P. Karst. (Basidiomycetes: Psathyrellaceae)

scientific article (publication date: February 2001)

(1757) Proposal to Conserve the Name Psilocybe (Basidiomycota) with a Conserved Type

scientific article published on February 2007

A Molecular Approach to the Phylogeny of Bryophytes: Cladistic Analysis of Chloroplast-Encoded 16S and 23S Ribosomal RNA Genes

scientific article

A New Perspective on Sustainable Soil Remediation-Case Study Suggests Novel Fungal Genera Could Facilitate Biodegradation of Hazardous Contaminants

scientific article published on 02 March 2016

A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern

scientific article published on 3 January 2015

A genetic linkage map of Cryptococcus neoformans variety neoformans serotype D (Filobasidiella neoformans).

scientific article

A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal

scientific article

A higher-level phylogenetic classification of the Fungi ⬇️

scientific article

A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)

scientific article

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

scientific article

A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities

article

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

scientific article (publication date: September 2016)

Abundance and diversity of Schizophyllum commune spore clouds in the Caribbean detected by selective sampling

scientific article published on 01 February 2001

Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens.

scientific article published on May 1995

Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences

scientific article

Ancient single origin for Malagasy primates

scientific article (publication date: 14 May 1996)

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

scientific article (publication date: October 2004)

Assessing biogeographic relationships between North American and Chinese macrofungi

article

Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

scientific article

Assessment of species distributions in Pleurotus based on trapping of airborne basidiospores

scientific article published in March 1994

Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome

scientific article

Biological Species in the Collybia dryophila Group in North America

scientific article published in July 1983

Biomass and compositional responses of ectomycorrhizal fungal hyphae to elevated CO2 and nitrogen fertilization

scientific article

CO2-enrichment and nutrient availability alter ectomycorrhizal fungal communities

scientific article

Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon

scientific article

Clonal and spontaneous origins of fluconazole resistance in Candida albicans

scientific article

Co-invading ectomycorrhizal fungal succession in pine-invaded mountain grasslands

scientific article published in 2022

Colony size can be used to determine the MIC of fluconazole for pathogenic yeasts

scientific article

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

scientific article

Comparative analysis of environmental and clinical populations of Cryptococcus neoformans

scientific article

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.

scientific article published on 11 January 2017

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

scientific article published on 23 December 2020

Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes

scientific article

Coprinus Pers. and the Disposition of Coprinus Species sensu lato

scientific article (publication date: February 2001)

Correction: Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus

scientific article published on 26 January 2017

Correction: Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus

article

Detecting Migrants in Populations of Rhizoctonia solani Anastomosis Group 3 from Potato in North Carolina Using Multilocus Genotype Probabilities

scientific article published in May 2003

Development and Characterization of a Genetic Linkage Map of Cryptococcus neoformans var. neoformans Using Amplified Fragment Length Polymorphisms and Other Markers

article

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

scientific article

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.

scientific article

Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP

scientific article

Draft genome sequence resource for Blumeriella jaapii, the cherry leaf spot pathogen

scientific article published on 27 April 2020

Dynamic and heterogeneous mutations to fluconazole resistance in Cryptococcus neoformans

scientific article

EVIDENCE FOR LIMITED INTERCONTINENTAL GENE FLOW IN THE COSMOPOLITAN MUSHROOM, SCHIZOPHYLLUM COMMUNE

scientific article published on 01 December 1999

Ectomycorrhizal Plant-Fungal Co-invasions as Natural Experiments for Connecting Plant and Fungal Traits to Their Ecosystem Consequences

scientific article published on 14 July 2020

Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest

scientific article

Ectomycorrhizal fungal diversity in orchards of cultivated pecan (Carya illinoinensis; Juglandaceae).

scientific article

Ectomycorrhizal fungal diversity predicted to substantially decline due to climate changes in North American Pinaceae forests

scientific article published in 2020

Ectomycorrhizal fungal sporocarp diversity and discovery of new taxa in Dicymbe monodominant forests of the Guiana Shield

article by Terry W. Henkel et al published 4 November 2011 in Biodiversity and Conservation

Ectomycorrhizal fungi enhance pine growth by stimulating iron‐dependent mechanisms with trade‐offs in symbiotic performance

scientific article published in 2023

Emission Factors of Microbial Volatile Organic Compounds from Environmental Bacteria and Fungi

scientific article published on 13 July 2018

Endemism and functional convergence across the North American soil mycobiome

scientific article

Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis

scientific article published in November 2003

Entocybe is proposed as a new genus in the Entolomataceae (Agaricomycetes, Basidiomycota) based on morphological and molecular evidence

scientific article

Environmental and anthropogenic controls over bacterial communities in wetland soils

scholarly article

Evaluating the impacts of multiple generalist fungal pathogens on temperate tree seedling survival

scientific article published in March 2012

Evidence for Limited Intercontinental Gene Flow in the Cosmopolitan Mushroom, Schizophyllum commune

article

Evidence of sexual recombination among Cryptococcus neoformans serotype A isolates in sub-Saharan Africa

scientific article published on December 2003

Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function

scientific article

Evolution of the gene encoding mitochondrial intermediate peptidase and its cosegregation with the A mating-type locus of mushroom fungi

article

Evolutionary Relationships of Lentinus to the Polyporaceae: Evidence from Restriction Analysis of Enzymatically Amplified Ribosomal Dna

scientific article published in July 1991

Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences

scientific article published on September 1992

Expression of genes involved in symbiotic carbon and nitrogen transport in Pinus taeda mycorrhizal roots exposed to CO2 enrichment and nitrogen fertilization.

scientific article published on 5 May 2009

Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition

scientific article published on 10 June 2019

Fungal community analysis by large-scale sequencing of environmental samples

scientific article published in September 2005

Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation

scientific article published on 31 August 2020

Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype

scientific article published on 29 March 2019

Genetic Diversity of Rhizoctonia solani AG-3 from Potato and Tobacco in North Carolina

scientific article published on 01 May 2002

Genetic Relatedness Among Anastomosis Groups inRhizoctoniaas Measured by DNA/DNA Hybridization

Genetic isolation between two recently diverged populations of a symbiotic fungus

scientific article published on 2 April 2015

Genetic structure of geographically different populations of candida albicans

scientific article published in January 2000

Genetic structure of populations of Rhizoctonia solani AG-3 on potato in eastern North Carolina

scientific article

Genetic structure of typical and atypical populations of Candida albicans from Africa

scientific article published on November 1999

Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis

scientific article published in January 2006

Global pine tree invasions are linked to invasive root symbionts

scientific article published in 2022

High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales

scientific article published on 3 December 2012

High levels of variation in ribosomal DNA sequences within and among spores of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica

scientific article published in March 2000

Hijacked: Co-option of host behavior by entomophthoralean fungi

scientific article

Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified southern hemisphere sister lineage

scientific article

Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans

scientific article published on September 1993

Identification of fungi associated with municipal compost using DNA-based techniques

scientific article

Improved resolution of major clades within Tuber and taxonomy of species within the Tuber gibbosum complex

scientific article

Increasing access to microfluidics for studying fungi and other branched biological structures.

scientific article published on 10 June 2019

Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition

article

Infragenic phylogeny of Collybia s. str. based on sequences of ribosomal ITS and LSU regions

scholarly article by Karen W. Hughes et al published February 2001 in Mycological Research

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system

scientific article published on 21 November 2016

Intersterility groups in the Pleurotus ostreatus complex from the continental United States and adjacent Canada

scientific article published in January 1993

Investigating niche partitioning of ectomycorrhizal fungi in specialized rooting zones of the monodominant leguminous tree Dicymbe corymbosa

scientific article published on 11 May 2017

Investigating the mycobiome of the Holcomb Creosote Superfund Site

scientific article published on 17 March 2020

Lack of genetic differentiation between two geographically diverse samples of Candida albicans isolated from patients infected with human immunodeficiency virus.

scientific article

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

scientific article published on 12 October 2020

Major clades of Agaricales: a multilocus phylogenetic overview ⬇️

scientific article published in November 2006

Membranomyces species are common ectomycorrhizal symbionts in Northern Hemisphere forests

article

Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus

scientific article

Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ

scientific article published on 22 October 2014

Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3.

scientific article published on 17 February 2014

Molecular Phylogeny of Amanita Based on Large-Subunit Ribosomal DNA Sequences: Implications for Taxonomy and Character Evolution

scientific article (publication date: July 1999)

Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions

scientific article

Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination

scientific article published on October 1996

Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics

scientific article

Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA.

scientific article

Molecular phylogeny of the Entomophthoromycota

scientific article

Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium

scientific article published in September 2007

Molecular phylogeny, biogeography and speciation of the mushroom species Pleurotus cystidiosus and allied taxa

scientific article

Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales)

article

Molecular typing of pathogenic fungi

scientific article

Multilocus sequence typing reveals three genetic subpopulations of Cryptococcus neoformans var. grubii (serotype A), including a unique population in Botswana

scientific article

Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone

scientific article published in February 2003

Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans

scientific article published in October 2000

Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD

scientific article published on 01 January 2002

Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae).

scientific article

Mushroom poisoning

scientific article published on 01 April 1997

NPK fertilizer use in loblolly pine plantations: Who are we really feeding?

scientific article published in 2022

New North American truffles (Tuber spp.) and their ectomycorrhizal associations

scientific article

New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa

scientific article

New species of Clavulina (Cantharellales, Basidiomycota) with resupinate and effused basidiomata from the Guiana Shield

scientific article

New species of Xerocomus (Boletales) from the Guiana Shield, with notes on their mycorrhizal status and fruiting occurrence

scientific article

Notes on Agaricus section Duploannulati using molecular and morphological data.

scientific article

Novel Tuber spp. (Tuberaceae, Pezizales) in the Puberulum Group from Mexico ⬇️

scientific article published on 30 November 2015

One Hundred and Seventeen Clades of Euagarics

scientific article (publication date: June 2002)

PCR-restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences inCandidaalbicans

scientific article published on 01 January 1999

Pathogen regulation of plant diversity via effective specialization.

scientific article

Phenetic and Cladistic Relationships in Collybia sect. Levipedes (Fungi: Basidiomycetes)

scientific article (publication date: May 1986)

Phylogenetic Analyses and the Distribution of Nematophagy Support a Monophyletic Pleurotaceae within the Polyphyletic Pleurotoid-Lentinoid Fungi

scientific article (publication date: March 2000)

Phylogenetic Analyses of Polemoniaceae Using Nucleotide Sequences of the Plastid Gene matK

article

Phylogenetic Relationships of Agaric Fungi Based on Nuclear Large Subunit Ribosomal DNA Sequences ⬇️

article

Phylogenetic Relationships of Lentinus (Basidiomycotina) Inferred from Molecular and Morphological Characters

scholarly article by David Hibbett & Rytas J. Vilgalys published July 1993 in Systematic Botany

Phylogenetic Systematics of Lepiota Sensu Lato Based on Nuclear Large Subunit rDNA Evidence

article

Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycota) based on nuclear and mitochondrial rDNA sequences

scholarly article by Valérie Hofstetter et al published September 2002 in Mycological Research

Phylogenetic and Phylogenomic Definition of Rhizopus Species.

scientific article

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives

scientific article published on 06 January 2021

Phylogenetic lineages in Entomophthoromycota. ⬇️

scientific article published on 19 March 2013

Phylogenetic relationships among coprinoid taxa and allies based on data from restriction site mapping of nuclear rDNA

scientific article published in January 1994

Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly

scientific article

Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales

scientific article

Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL.

scientific article published on June 1997

Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota

scientific article published on 01 July 2018

Phylogenetic utility of indels within ribosomal DNA and β-tubulin sequences from fungi in the Rhizoctonia solani species complex

article

Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis

scientific article published on December 2004

Phylogeny and phenotypic characterization of pathogenic Cryptococcus species and closely related saprobic taxa in the Tremellales

scientific article

Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region

scientific article published in April 1999

Phylogeny of Rozites, Cuphocybe and Rapacea inferred from ITS and LSU rDNA sequences

scientific article published in July 2002

Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci

scientific article

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

scientific article published in July 2014

Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune

scientific article

Population Biology of the Rhizoctonia solani Complex

Production and turnover of ectomycorrhizal extramatrical mycelial biomass and necromass under elevated CO2 and nitrogen fertilization

scientific article

Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations

scientific article

Reconstructing the early evolution of Fungi using a six-gene phylogeny ⬇️

scientific article

Response of fungal communities to fire in a subtropical peatland

scientific article published on 13 July 2021

Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems.

scientific article

Revisiting the rDNA sequence diversity of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica

scientific article published on 30 July 2003

Rhacophyllus and Zerovaemyces. Teleomorphs or Anamorphs?

scientific article (publication date: November 2000)

Ribosomal DNA Restriction Fragment Length Polymorphisms inRhizoctonia solani

Ribosomal DNA systematics of Ceratobasidium and Thanatephorus with Rhizoctonia anamorphs

scientific article published in November 2001

Scattered far and wide: A broadly distributed temperate dune grass finds familiar fungal root associates in its invasive range

scholarly article by Renee B. Johansen et al published September 2017 in Soil Biology and Biochemistry

Sequential utilization of hosts from different fly families by genetically distinct, sympatric populations within the Entomophthora muscae species complex

scientific article

Spatial Distribution and Genetic Relationships Among Individuals in a Natural Population of the Oyster Mushroom Pleurotus Ostreatus

scientific article published in March 1992

Spatiotemporal Transformation in the Alkaloid Profile of Pinus Roots in Response to Mycorrhization

scientific article published on 22 April 2019

Speciation and Species Concepts in the Collybia Dryophila Complex

scientific article published in November 1991

Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens

scientific article published in 2004

Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex

scientific article

Suilloid fungi as global drivers of pine invasions

scientific article published on 28 January 2019

Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal

scientific article

Systematics of Lyophyllum Section Difformia Based on Evidence from Culture Studies and Ribosomal DNA Sequences

scientific article published in September 1993

Taxonomic Revision and Examination of Ecological Transitions of the Lyophyllaceae (Basidiomycota, Agaricales) Based on a Multigene Phylogeny

scientific article published in December 2014

Taxonomic misidentification in public DNA databases

scientific article published in 2003

The Asian black truffle Tuber indicum can form ectomycorrhizas with North American host plants and complete its life cycle in non-native soils

article

The Crepidotaceae (Basidiomycota, Agaricales): phylogeny and taxonomy of the genera and revision of the family based on molecular evidence ⬇️

scientific article published on January 1, 2005

The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods

scientific article

The chromosomal region containing pab-1, mip, and the A mating type locus of the secondarily homothallic homobasidiomycete Coprinus bilanatus

scientific article published in February 2001

The ectomycorrhizal fungal community in a neotropical forest dominated by the endemic dipterocarp Pakaraimaea dipterocarpacea

scientific article published in 2013

The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor

scientific article published in August 2004

The search for the fungal tree of life

scientific article published on 24 September 2009

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Toward a better understanding of the infrageneric relationships in Cortinarius (Agaricales, Basidiomycota).

scientific article

Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus <i>Suillus pungens</i>

scientific article published on 2 November 2021

Uniparental Mitochondrial Transmission in Sexual Crosses in Cryptococcus neoformans

article

Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications

scientific article (publication date: July 2000)

Vegetation and microbes interact to preserve carbon in many wooded peatlands

scientific article published on 26 March 2021

Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life

scientific article

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