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List of works by Xiaodong Zhang

A link between sequence conservation and domain motion within the AAA+ family

scientific article published in April 2004

A new labeling method for methyl transverse relaxation-optimized spectroscopy NMR spectra of alanine residues

scientific article published on 28 November 2007

A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA

scientific article published in Nature Communications

ATP-dependent transcriptional activation by bacterial PspF AAA+protein.

scientific article published in May 2004

Activity map of the Escherichia coli RNA polymerase bridge helix

scientific article published on 25 February 2011

Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPase

scientific journal article

Automated assignment in selectively methyl-labeled proteins.

scientific article

BRCT domain interactions in the heterodimeric DNA repair protein XRCC1-DNA ligase III

scientific article (publication date: 22 May 2001)

Bacterial enhancer-binding proteins: unlocking sigma54-dependent gene transcription

scientific article published on 6 December 2006

Biological microscopy and soft X-ray optics at Stony Brook

scientific article published in May 1996

Chemical contrast in X-ray microscopy and spatially resolved XANES spectroscopy of organic specimens

scientific article published on November 6, 1992

Conformational changes in the AAA ATPase p97-p47 adaptor complex

scientific article published on 3 May 2006

Coupling AAA protein function to regulated gene expression

scientific article published on 31 August 2011

Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein.

scientific article published on 19 September 2007

Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting

scientific article published on 31 January 2009

Crosstalk within a functional INO80 complex dimer regulates nucleosome sliding

scientific article published on 6 June 2017

Cryo-EM structures of the human INO80 chromatin-remodeling complex

scientific article published on 4 December 2017

Crystal Structures of Multidrug Binding Protein TtgR in Complex with Antibiotics and Plant Antimicrobials

scientific article

Crystal structure of MexZ, a key repressor responsible for antibiotic resistance in Pseudomonas aeruginosa

scientific article

Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators

scientific article

Detailed structural insights into the p97-Npl4-Ufd1 interface

scientific article

Diffraction-limited imaging in a scanning transmission x-ray microscope

scientific article published in November 1991

Dissecting the ATP hydrolysis pathway of bacterial enhancer-binding proteins

scientific article published on February 2008

Distinct conformations of the protein complex p97-Ufd1-Npl4 revealed by electron cryomicroscopy

scientific article published on 9 January 2012

Domain Cross-talk during Effector Binding to the Multidrug Binding TTGR Regulator

scientific article

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies ⬇️

scientific article published on 19 February 2014

Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR.

scientific article

Exposure strategies for polymethyl methacrylate from in situ x-ray absorption near edge structure spectroscopy

scientific article published in July 1995

Foot-and-mouth disease virus 2C is a hexameric AAA+ protein with a coordinated ATP hydrolysis mechanism

scientific article

From signal perception to signal transduction: ligand-induced dimeric switch of DctB sensory domain in solution

scientific article published on 10 February 2010

Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein

scientific article published on 25 May 2009

Going through the motions: The ATPase cycle of p97

scientific article published in October 2006

IHF-binding sites inhibit DNA loop formation and transcription initiation

scientific article published on 24 April 2009

Insights into adaptor binding to the AAA protein p97.

scientific article published on February 2008

Inter-ring rotations of AAA ATPase p97 revealed by electron cryomicroscopy.

scientific article published on 05 March 2014

Interactions between the nucleosome histone core and Arp8 in the INO80 chromatin remodeling complex

scientific article

Intramolecular signal transmission in a tetrameric repressor of the IclR family

scientific article

Letter to the Editor: Complete Backbone Resonance Assignments of p47: The 41kDa Adaptor Protein of the AAA ATPase p97

scientific article published in March 2004

Machinery of protein folding and unfolding

scientific article

Mapping and measuring DNA to protein ratios in mammalian sperm head by XANES imaging.

scientific article

Mechanism of auto-inhibition and activation of Mec1ATR checkpoint kinase

scientific article published on 09 November 2020

Mechanism of homotropic control to coordinate hydrolysis in a hexameric AAA+ ring ATPase

scientific article

Mechanisms for activating bacterial RNA polymerase

scientific article published on 07 June 2010

Mechanisms of ATPases--a multi-disciplinary approach

scientific article

Mechanochemical ATPases and transcriptional activation.

scientific article

Micro-XANES: Chemical contrast in the scanning transmission X-ray microscope

scientific article published in August 1994

Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor

scientific article published on 04 March 2008

Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activator

scientific article published in August 2014

Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model

scientific article (publication date: 28 March 2003)

Mutational analysis of dimeric linkers in peri- and cytoplasmic domains of histidine kinase DctB reveals their functional roles in signal transduction.

scientific article

New results in soft X-ray microscopy

scientific article published in April 1994

Nitric oxide-responsive interdomain regulation targets the σ54-interaction surface in the enhancer binding protein NorR

scientific article published on September 2010

Organization of an activator-bound RNA polymerase holoenzyme

scientific article

PhhR binds to target sequences at different distances with respect to RNA polymerase in order to activate transcription

scientific article

RNA polymerase and transcription elongation factor Spt4/5 complex structure

scientific article

Regulation of p97 in the ubiquitin-proteasome system by the UBX protein-family.

scientific article published on 22 September 2011

Sigma54-dependent transcription activator phage shock protein F of Escherichia coli: a fragmentation approach to identify sequences that contribute to self-association

scientific article

Soft x‐ray microscopy with coherent x rays (invited)

scientific article published in January 1992

Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly

scientific article

Structural and functional implications of phosphorylation and acetylation in the regulation of the AAA+ protein p97.

scientific article published on February 2010

Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47

scientific journal article

Structural basis of the nucleotide driven conformational changes in the AAA+ domain of transcription activator PspF.

scientific article published on 13 January 2006

Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7

scientific article published on 10 February 2020

Structural insights into the activity of enhancer-binding proteins.

scientific article

Structural insights into the p97-Ufd1-Npl4 complex.

scholarly article

Structure and mechanism of action of the BRCA2 breast cancer tumor suppressor

scientific article

Structure of an XRCC1 BRCT domain: a new protein-protein interaction module

scientific article

Structure of the AAA ATPase p97

scientific article

Structure of the haemagglutinin-esterase-fusion glycoprotein of influenza C virus

scientific article

Structure of the whole cytosolic region of ATP-dependent protease FtsH.

scientific article published on June 2006

Structure, dynamics and interactions of p47, a major adaptor of the AAA ATPase, p97.

scientific article

Structure-based mechanism of lipoteichoic acid synthesis by Staphylococcus aureus LtaS

scientific article

Structures and organisation of AAA+ enhancer binding proteins in transcriptional activation

scientific article

The 'glutamate switch' provides a link between ATPase activity and ligand binding in AAA+ proteins

scientific article

The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54.

scholarly article

The BRCA1 C-terminal domain: structure and function.

scientific article

The TetR family of transcriptional repressors.

scientific article

The crystal structure of murine p97/VCP at 3.6A

scientific article

The localization and phosphorylation of p47 are important for Golgi disassembly-assembly during the cell cycle

scientific article

The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: evidence from isothermal titration calorimetry

scientific article

The p97-FAF1 protein complex reveals a common mode of p97 adaptor binding

scientific article published on 11 March 2014

The role of the N-domain in the ATPase activity of the mammalian AAA ATPase p97/VCP.

scientific article published on 23 January 2012

Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas

scientific article published on 20 April 2011

Transcriptional regulation by the dedicated nitric oxide sensor, NorR: a route towards NO detoxification

scientific article published on January 2011

Trapping of a Transcription Complex Using a New Nucleotide Analogue: AMP Aluminium Fluoride

scientific article

TtgV bound to a complex operator site represses transcription of the promoter for the multidrug and solvent extrusion TtgGHI pump.

scientific article published on May 2004

TtgV represses two different promoters by recognizing different sequences

scientific article published on 29 December 2008

VCIP135, a novel essential factor for p97/p47-mediated membrane fusion, is required for Golgi and ER assembly in vivo

scientific article

Visualizing the organization and reorganization of transcription complexes for gene expression.

scientific article

X-ray crystallographic determination of the structure of the influenza C virus haemagglutinin-esterase-fusion glycoprotein

scientific article published in May 1999

p37 is a p97 adaptor required for Golgi and ER biogenesis in interphase and at the end of mitosis

scientific article

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