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List of works by Nynke Dekker

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Salt Dependence of Ion Transport and DNA Translocation through Solid-State Nanopores

scientific article published on 01 January 2006
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

scientific article
Antitumour drugs impede DNA uncoiling by topoisomerase I

scientific article published in Nature
Single-molecule investigations of the stringent response machinery in living bacterial cells

scientific article
Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

scientific article
Direct force measurements on DNA in a solid-state nanopore

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments

scientific article
Cellular strategies for regulating DNA supercoiling: a single-molecule perspective

scientific article published on August 2010
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

scientific article published on 8 August 2004
Quantitative modeling and optimization of magnetic tweezers

scientific article
Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids

scientific article
Origin of the electrophoretic force on DNA in solid-state nanopores

article published in 2009
Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

scientific article
Distinguishing Single- and Double-Stranded Nucleic Acid Molecules Using Solid-State Nanopores

article by Gary M. Skinner et al published 12 August 2009 in Nano Letters
When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

scientific article
Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

scientific article
Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque

scientific article published on 8 June 2012
Studying genomic processes at the single-molecule level: introducing the tools and applications

scientific article published on 30 October 2012
An optimized software framework for real-time, high-throughput tracking of spherical beads

scientific article published in October 2014
Controlling nanopore size, shape and stability

scientific article published on February 22, 2010
High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics

scientific article
Torsional sensing of small-molecule binding using magnetic tweezers

scientific article published on 12 July 2010
Fast dynamics of supercoiled DNA revealed by single-molecule experiments

scientific article
Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase

scientific article published on 11 February 2015
Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells

scientific article published on 18 December 2014
Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124I

scientific article
Nanobubbles in solid-state nanopores

scientific article published on 24 August 2006
Control of Shape and Material Composition of Solid-State Nanopores

article
A force calibration standard for magnetic tweezers

scientific article published in December 2014
Direct force measurements on double-stranded RNA in solid-state nanopores

scientific article published in February 2010
Torque-limited RecA polymerization on dsDNA.

scientific article
Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers.

scientific article published in October 2017
Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments

scientific article
Nanopore tomography of a laser focus

scientific article
Biological Magnetometry: Torque on Superparamagnetic Beads in Magnetic Fields

scientific article published in Physical Review Letters
Torque spectroscopy for the study of rotary motion in biological systems

scientific article published on 26 December 2014
A method to track rotational motion for use in single-molecule biophysics

scientific article published in October 2011
Structural analysis of hyperperiodic DNA from Caenorhabditis elegans

scientific article published on 31 May 2006
Role of Tension and Twist in Single-Molecule DNA Condensation

scientific article published in Physical Review Letters
Thermophilic topoisomerase I on a single DNA molecule

scientific article published in May 2003
An RNA toolbox for single-molecule force spectroscopy studies

scientific article published on 28 September 2007
Single-Molecule Magnetic Tweezers Studies of Type IB Topoisomerases

scientific article published on 01 January 2009
Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes

scientific article published on 8 January 2015
Atomic force microscopy shows that vaccinia topoisomerase IB generates filaments on DNA in a cooperative fashion

scientific article
Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments

scientific article published on 30 September 2015
Distinguishable populations report on the interactions of single DNA molecules with solid-state nanopores

scientific article
Rapid manufacturing of low-noise membranes for nanopore sensors by trans-chip illumination lithography

scientific article published on 26 October 2012
Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site

scientific article published on 22 October 2015
The passage of homopolymeric RNA through small solid-state nanopores

scientific article
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers

scientific article

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