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List of works by Lindsay Hall

A mouse model of pathological small intestinal epithelial cell apoptosis and shedding induced by systemic administration of lipopolysaccharide

scientific article published on 15 August 2013

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis

scientific article published on 28 April 2022

Allocoprobacillus halotolerans gen. nov., sp. nov and Coprobacter tertius sp. nov., isolated from human gut microbiota

scientific article published in 2023

An update on the human and animal enteric pathogen Clostridium perfringens

scientific article published on 06 August 2018

Antibiotic use and the risk of rheumatoid arthritis: a population-based case-control study

scientific article published on 07 August 2019

Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis

scientific article

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection.

scientific article published on 23 January 2012

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

scientific article published on 29 March 2020

Bifidobacterium breve reduces apoptotic epithelial cell shedding in an exopolysaccharide and MyD88-dependent manner ⬇️

scientific article published on January 2017

Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem

scientific article published on 18 November 2019

Candidate live, attenuated Salmonella enterica serotype Typhimurium vaccines with reduced fecal shedding are immunogenic and effective oral vaccines

scientific article published on 12 February 2007

Cell shedding: old questions answered

scientific article published on 20 September 2012

Characterisation of a live Salmonella vaccine stably expressing the Mycobacterium tuberculosis Ag85B-ESAT6 fusion protein

scientific article published on 13 September 2009

Correction: NK Cells Influence Both Innate and Adaptive Immune Responses after Mucosal Immunization with Antigen and Mucosal Adjuvant

scientific article published on 16 May 2018

Development and characterization of an enhanced nonviral expression vector for electroporation cancer treatment.

scientific article

Draft Genome Sequence of Raoultella ornithinolytica P079F W, Isolated from the Feces of a Preterm Infant

scientific article published on 15 August 2019

Draft Genome Sequence of a Preterm Infant-Derived Isolate of Candida parapsilosis

scientific article published in 2023

Draft Genome Sequences of Citrobacter freundii and Citrobacter murliniae Strains Isolated from the Feces of Preterm Infants

scientific article published on 15 August 2019

Enhancement of electroporation facilitated immunogene therapy via T-reg depletion.

scientific article

Enterococcus innesii sp. nov., isolated from the wax moth Galleria mellonella

scholarly article published in 2021

Exploring the Genomic Diversity and Antimicrobial Susceptibility of Bifidobacterium pseudocatenulatum in a Vietnamese Population

scientific article published on 15 September 2021

Genomic Analysis of Clostridium perfringens BEC/CPILE-Positive, Toxinotype D and E Strains Isolated from Healthy Children

scientific article published on 19 September 2019

Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis

scientific article published on 01 October 2019

Gut microbiome in new-onset Crohn's disease.

scientific article

Improving causality in microbiome research: can human genetic epidemiology help?

scientific article published on 10 December 2019

Incidence of necrotising enterocolitis before and after introducing routine prophylactic Lactobacillus and Bifidobacterium probiotics

scientific article published on 30 October 2019

Induction and Activation of Adaptive Immune Populations During Acute and Chronic Phases of a Murine Model of Experimental Colitis

scientific article published on 14 May 2010

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

scientific article published on 18 March 2019

Modulating the early-life gut microbiota using pro-, pre-, and synbiotics to improve gut health, child development, and growth

NK cells influence both innate and adaptive immune responses after mucosal immunization with antigen and mucosal adjuvant.

scientific article

Natural killer cells protect against mucosal and systemic infection with the enteric pathogen Citrobacter rodentium

scientific article published on 3 December 2012

Natural killer cells protect mice from DSS-induced colitis by regulating neutrophil function via the NKG2A receptor

scientific article published on 23 January 2013

Non-viral immune electrogene therapy induces potent antitumour responses and has a curative effect in murine colon adenocarcinoma and melanoma cancer models

scientific article

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants.

scientific article published on 2 November 2017

Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) pl

scientific article published on 20 September 2019

Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights

scientific article published on October 2017

Preterm Infants Harbour a Rapidly Changing Mycobiota That Includes Candida Pathobionts

scientific article published on 09 November 2020

Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.

scientific article published on 12 December 2017

Probing local innate immune responses after mucosal immunisation

scientific article

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

scientific article published in 2023

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens

scientific article published on 16 December 2019

Recent advances in understanding the neonatal microbiome

scientific article published on 22 May 2020

Regulation of host gene expression by gut microbiota

scientific article

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches

scientific article published on 01 February 2020

Response: Commentary: Probing Genomic Aspects of the Multi-Host Pathogen Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors

scientific article published on 16 August 2018

Role of autophagy in NOD2-induced inflammation in Crohn's disease

scientific article published on 21 February 2012

Streaming histogram sketching for rapid microbiome analytics

scientific article published on 16 March 2019

Succession of Bifidobacterium longum Strains in Response to a Changing Early Life Nutritional Environment Reveals Dietary Substrate Adaptations

scientific article published on 15 July 2020

The early life microbiota protects neonatal mice from pathological small intestinal epithelial cell shedding

scientific article published on 06 April 2020

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity

scientific article published on 02 December 2019

The microbiome beyond the horizon of ecological and evolutionary theory

scientific article published on 16 October 2017

The microbiota, antibiotics and breast cancer

scientific article published on 18 October 2019

The sphingosine-1-phosphate analogue FTY720 impairs mucosal immunity and clearance of the enteric pathogen Citrobacter rodentium.

scientific article

Use of bioluminescence imaging to track neutrophil migration and its inhibition in experimental colitis.

scientific article published on 16 August 2010

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