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List of works by Adelinde Uhrmacher

2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells

scientific article

2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReNcell VM).

scientific article published in March 2006

2-DE proteomic profiling of neuronal stem cells

scientific article published on January 2006

Agent-Oriented Simulation

scientific article

Automatic Reuse, Adaption, and Execution of Simulation Experiments via Provenance Patterns

scientific article published in 2023

Challenges for Modeling and Simulation Methods in Systems Biology

Composing problem solvers for simulation experimentation: a case study on steady state estimation

scientific article

Context, Composition, Automation, and Communication: The C <sup>2</sup> AC Roadmap for Modeling and Simulation

scientific article published on 19 June 2024

Discrete event, multi-level simulation of metabolite channeling

scientific article published in July 2004

Elucidating the Sources of β-Catenin Dynamics in Human Neural Progenitor Cells ⬇️

scientific article published on August 20, 2012

Exploring mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling

scientific article published on 13 July 2020

Flexible experimentation in the modeling and simulation framework JAMES II--implications for computational systems biology

scientific article published on 28 January 2010

Foundations of formal reconstruction of biochemical networks

ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology

scientific article published on 3 August 2016

Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model

scientific article

Modeling agents and their environment in Multi-Level-DEVS

scientific article published in December 2012

Modelling and simulating decision processes of linked lives: An approach based on concurrent processes and stochastic race

scientific article

Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules

scientific article published on 01 January 2019

Non-canonical pathway induced by Wnt3a regulates β-catenin via Pyk2 in differentiating human neural progenitor cells

scientific article published on 7 July 2017

PROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric Systems

scientific article published on 01 July 2019

Potential based, spatial simulation of dynamically nested particles

scientific article published on 27 November 2019

Quantitative and kinetic profile of Wnt/β-catenin signaling components during human neural progenitor cell differentiation.

scientific article

ROS Dependent Wnt/β-Catenin Pathway and Its Regulation on Defined Micro-Pillars-A Combined In Vitro and In Silico Study

scientific article published on 27 July 2020

Relating simulation studies by provenance—Developing a family of Wnt signaling models

scientific article published on 05 August 2021

Requirements for Documenting Electrical Cell Stimulation Experiments for Replicability and Numerical Modeling∗

scientific article published on 01 July 2019

Rule-based multi-level modeling of cell biological systems ⬇️

scientific article published on October 17, 2011

Spatio-temporal model of endogenous ROS and raft-dependent WNT/beta-catenin signaling driving cell fate commitment in human neural progenitor cells

scientific article (publication date: March 2015)

Streamlining Simulation Experiments with Agent-Based Models in Demography

Studying the role of lipid rafts on protein receptor bindings with cellular automata

scientific article published on 01 May 2013

Using a Digital Twin of an Electrical Stimulation Device to Monitor and Control the Electrical Stimulation of Cells in vitro

scientific article published on 08 December 2021

VPMBench: a test bench for variant prioritization methods

scientific article published on 08 November 2021

Zero Lookahead? Zero Problem. The Window Racer Algorithm

scientific article published on 05 June 2023

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