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List of works by David Tollervey

3'-processing of yeast tRNATrp precedes 5'-processing.

scientific article published on February 2003

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm

scientific article

7SL RNA from Schizosaccharomyces pombe is encoded by a single copy essential gene

scientific article

90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors

scientific article

A U4-like small nuclear RNA is dispensable in yeast.

scientific article published in December 1983

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

scientific article

A complex interplay of positive and negative elements is responsible for the different transcriptional activity of liver NF1 variants

scientific article published on 01 January 1995

A complex pathway for 3' processing of the yeast U3 snoRNA.

scientific article published on December 2003

A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis

scientific article published on 03 February 2022

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

scientific article

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation

scientific article

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation

article by Jochen Baßler et al published 6 July 2015 in Journal of Cell Biology

A new system for naming ribosomal proteins

scientific article

A novel in vivo assay reveals inhibition of ribosomal nuclear export in ran-cycle and nucleoporin mutants

scientific article

A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits

scientific article

A nuclear surveillance pathway for mRNAs with defective polyadenylation.

scientific article published on November 2005

A pre-ribosome with a tadpole-like structure functions in ATP-dependent maturation of 60S subunits

scientific article

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits

scientific article

A surfeit of factors: why is ribosome assembly so much more complicated in eukaryotes than bacteria?

scientific article published on 19 May 2004

A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs

scientific article published on August 2013

A translocation associated, loss-of-function mutation in the nitrogen metabolite repression regulatory gene of Aspergillus nidulans can revert intracistronically

A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts

scientific article

Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro

scientific article (publication date: 12 April 1996)

An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation

scientific article

An RNA Reset Button

scientific article published on 01 February 2012

An RNA-dependent mechanism for transient expression of bacterial translocation filaments.

scientific article published on 8 February 2018

An endoribonuclease functionally linked to perinuclear mRNP quality control associates with the nuclear pore complexes

scientific article

An inversion truncating the creA gene of Aspergillus nidulans results in carbon catabolite derepression.

scientific article published in May 1990

Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro ⬇️

scientific article published on August 18, 2010

Base pairing between U3 small nucleolar RNA and the 5' end of 18S rRNA is required for pre-rRNA processing

scientific article

Birth of the snoRNPs: the evolution of RNase MRP and the eukaryotic pre-rRNA-processing system

scientific article

Birth of the snoRNPs: the evolution of the modification-guide snoRNAs.

scientific article published in October 1998

Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing

scientific journal article

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

scientific article

Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

scientific article published in November 2012

Building ribosomes: even more expensive than expected?

scientific article published in June 2007

Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs

scientific article published on August 1988

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits ⬇️

scientific article published on December 1, 2003

Cloning of Schizosaccharomyces pombe genes encoding the U1, U2, U3 and U4 snRNAs

scientific article

Coding-sequence determinants of gene expression in Escherichia coli

scientific article

Cotranscriptional events in eukaryotic ribosome synthesis

scientific article (publication date: 2015)

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

scientific article

Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking

scientific article published on 7 May 2010

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

scientific article

Crosstalk between RNA metabolic pathways: an RNOMICS approach

scientific article

Defining the RNA Interactome by Total RNA-Associated Protein Purification

Defining the RNA interactome by total RNA-associated protein purification

scientific article published on 08 April 2019

Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus

scientific article published on 2 April 2007

Dhr1p, a putative DEAH-box RNA helicase, is associated with the box C+D snoRNP U3.

scientific article

Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes

scientific article

Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae

scientific article

Domain-wide, locus-specific suppression of nitrogen metabolite repressed mutations in Aspergillus nidulans

E. coli 4.5S RNA is part of a ribonucleoprotein particle that has properties related to signal recognition particle.

scientific article

Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast

scientific article

Evolutionary conservation of the human nucleolar protein fibrillarin and its functional expression in yeast

scientific article

FLIPing heterokaryons to analyze nucleo-cytoplasmic shuttling of yeast proteins

scientific article published on 15 March 2006

Fibrillarin is essential for early development and required for accumulation of an intron-encoded small nucleolar RNA in the mouse

scientific journal article

Final pre-40S maturation depends on the functional integrity of the 60S subunit ribosomal protein L3.

scientific article

Finding the Exosome ⬇️

scientific article published on 01 January 2011

Finding the exosome

scientific article published on January 2010

Formation and Nuclear Export of Preribosomes Are Functionally Linked to the Small-Ubiquitin-Related Modifier Pathway

article by Vikram Govind Panse et al published 13 September 2006 in Traffic

Formation and nuclear export of tRNA, rRNA and mRNA is regulated by the ubiquitin ligase Rsp5p

scientific article

Function and synthesis of small nucleolar RNAs

scientific article (publication date: June 1997)

Functional analysis of Rrp7p, an essential yeast protein involved in pre-rRNA processing and ribosome assembly

scientific article

Functional link between ribosome formation and biogenesis of iron-sulfur proteins

scientific article

Functions of Long Non-Coding RNAs in Non-mammalian Systems

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

scientific article

Genetic and biochemical analyses of yeast RNase MRP.

scientific article published on January 1995

Genetic and physical interactions involving the yeast nuclear cap-binding complex

scientific article

Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria

scientific article

Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts

scientific article published on 20 May 2016

High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC).

scientific article published in January 2018

Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit

scientific article

HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA

article

HuD is a neural enhancer of global translation acting on mTORC1-responsive genes and sponged by the Y3 small non-coding RNA

article

Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data

scientific article

Identification and functional analysis of a novel yeast small nucleolar RNA

scientific article published on November 1993

Identification of RNA helicase target sites by UV cross-linking and analysis of cDNA.

scientific article

Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction

Identification of a 60S preribosomal particle that is closely linked to nuclear export.

scientific article

Identification of a regulated pathway for nuclear pre-mRNA turnover.

scientific article

Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli

scientific article

Identification of miRNA-Target RNA Interactions Using CLASH.

scientific article published on January 2016

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

scholarly article

Imaging the migrating border cell cluster in living Drosophila egg chambers

scientific article

Immunoprecipitation distinguishes non-overlapping groups of snRNPs in Schizosaccharomyces pombe

scientific article published in September 1990

Immunoprecipitation of RNA:DNA Hybrids from Budding Yeast

scientific article published in January 2018

Inactivation of cleavage factor I components Rna14p and Rna15p induces sequestration of small nucleolar ribonucleoproteins at discrete sites in the nucleus

scientific article published on 30 January 2008

Insights into the structure and function of a guide RNP

scientific article published on 01 April 2003

Integrative vectors for regulated expression of SARS-CoV-2 proteins implicated in RNA metabolism

scientific article published on 03 November 2020

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery

scientific article

Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery.

scientific article

Kinetic analysis demonstrates a requirement for the Rat1 exonuclease in cotranscriptional pre-rRNA cleavage

scientific article

Kinetic analysis of pre-ribosome structure in vivo.

scientific article published on 23 October 2012

Lighting Up pre-mRNA Recognition

scientific article published on 01 September 2014

Looking into the barrel of the RNA exosome

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis

scientific article

Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough

scientific article published on 22 December 2015

Lsm Proteins are required for normal processing and stability of ribosomal RNAs

scientific article (publication date: 24 January 2003)

Lsm proteins are required for normal processing of pre-tRNAs and their efficient association with La-homologous protein Lhp1p

scientific article

Making ribosome

scientific article published in 2002

Making ribosomes

scientific article

Mapping targets for small nucleolar RNAs in yeast

scientific article published on 22 November 2018

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding

scientific article published on April 2013

Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)

scientific article

Maturation and intranuclear transport of pre-ribosomes requires Noc proteins

scientific article

Mex67p mediates nuclear export of a variety of RNA polymerase II transcripts.

scientific article

Microarray detection of novel nuclear RNA substrates for the exosome.

scientific article

Modelling Yeast Pre-rRNA Processing

Modelling co-transcriptional cleavage in the synthesis of yeast pre-rRNA

Molecular biology: RNA lost in translation.

scientific article

Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control

scientific article published in Nature Communications

Motoring toward pre-60S-ribosome export

scientific article published in January 2016

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome

scientific article

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target

scientific article published on 19 December 2011

Musing on the structural organization of the exosome complex.

scientific article

Mutational analysis of Schizosaccharomyces pombe U4 snRNA by plasmid exchange

scientific article published on August 1, 1992

Mutational analysis of an essential binding site for the U3 snoRNA in the 5′ external transcribed spacer of yeast pre-rRNA

article published in 1994

Mutations to constitutivity and derepression are separate and separable in a regulatory gene of Aspergillus nidulans

article

Naf1 p is a box H/ACA snoRNP assembly factor

scientific article

Network of epistatic interactions within a yeast snoRNA.

scientific article published on 14 April 2016

Nob1p is required for cleavage of the 3' end of 18S rRNA

scientific article

Nonprotein-coding Genes

article

Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast

scientific article

Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability

scientific article

Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast

scientific article

Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast

scientific article published on 27 January 2017

Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p

scientific article

Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.

scientific article published on November 2004

Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis

scientific article

PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA

scientific article

Pop3p is essential for the activity of the RNase MRP and RNase P ribonucleoproteins in vivo

scientific article

Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases

scientific article published on 2 June 2016

Precursors to the U3 small nucleolar RNA lack small nucleolar RNP proteins but are stabilized by La binding.

scientific article published in August 2000

Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.

scientific article published in June 2002

Processing of pre-ribosomal RNA in Saccharomyces cerevisiae

scientific article (publication date: December 1995)

Processing of the precursors to small nucleolar RNAs and rRNAs requires common components

scientific article

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

scientific article

Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis

scientific article

Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase

scientific article

RNA Binding by Histone Methyltransferases Set1 and Set2.

scientific article published on 8 May 2017

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

scientific article

RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.

scientific article

RNA in pieces ⬇️

scientific article published on 06 July 2011

RNA mimicry by the fap7 adenylate kinase in ribosome biogenesis

scientific article

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit

scientific article published on 13 October 2017

RNA processing marches on.

scientific article

RNA substrate length as an indicator of exosome interactions in vivo

scientific article published on 3 July 2017

RNA surveillance and the exosome ⬇️

scientific article published in April 2015

RNA-quality control by the exosome

scientific article

Rea1, a dynein-related nuclear AAA-ATPase, is involved in late rRNA processing and nuclear export of 60 S subunits

scientific article

Regulatory Aspects of rRNA Modification and Pre-rRNA Processing

Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery ⬇️

scientific article published on July 17, 2011

RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

scientific article

Ribosomal RNA

Ribosomal RNA

Ribosome maturation by the endoribonuclease YbeY stabilises a type III secretion system transcript required for virulence of enterohemorrhagic Escherichia coli.

scientific article published on 20 April 2018

Ribosome synthesis in Saccharomyces cerevisiae

scientific article

Ribosome synthesis meets the cell cycle

scientific article

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits

scientific article published on 7 October 2014

Rlp7p is associated with 60S preribosomes, restricted to the granular component of the nucleolus, and required for pre-rRNA processing

scientific article

Rok1p is a putative RNA helicase required for rRNA processing

scientific article

Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation

scientific article

Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA

scientific article

Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.

scientific article published in October 2003

Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly

scientific article

Schizosaccharomyces pombe U4 small nuclear RNA closely resembles vertebrate U4 and is required for growth

scientific article

Sen34p depletion blocks tRNA splicing in vivo and delays rRNA processing

scientific article

Signal-sequence recognition by an Escherichia coli ribonucleoprotein complex

scientific article published in Nature

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

scientific article

Spb4p, an essential putative RNA helicase, is required for a late step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae.

scientific article

Ssf1p prevents premature processing of an early pre-60S ribosomal particle

scientific article

Strand-specific, high-resolution mapping of modified RNA polymerase II.

scientific article published on 10 June 2016

Structure and function of signal recognition particle (SRP).

scientific article published on January 1990

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel

scientific article

Substrate specificity of the TRAMP nuclear surveillance complexes

scientific article published on 19 June 2020

Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae

scientific article

Surveillance-ready transcription: nuclear RNA decay as a default fate.

scientific article published in March 2018

Synthesis and assembly of the box C+D small nucleolar RNPs

scientific article

Tailing Off: PABP and CNOT Generate Cycles of mRNA Deadenylation

scientific article published on 01 June 2018

Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly

scientific article

Termination by torpedo

scientific article published in Nature

The 'scavenger' m7GpppX pyrophosphatase activity of Dcs1 modulates nutrient-induced responses in yeast

scientific article

The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast.

scientific article

The 3' end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism

scientific article

The 5' end of the 18S rRNA can be positioned from within the mature rRNA.

scientific article published on May 1999

The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.

scientific article published on 24 February 2015

The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome

scientific article

The Noc proteins involved in ribosome synthesis and export contain divergent HEAT repeats.

scientific article published in March 2004

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans

scientific article published on 14 July 2016

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans

scientific article published on 31 March 2016

The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins

scientific article

The Putative RNA Helicase Dbp4p Is Required for Release of the U14 snoRNA from Preribosomes in Saccharomyces cerevisiae

scientific article

The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

scientific article

The conserved RNA-binding protein Seb1 promotes cotranscriptional ribosomal RNA processing by controlling RNA polymerase I progression ⬇️

journal article from 'Nature Communications' published in 2023

The exosome subunit Rrp44 plays a direct role in RNA substrate recognition

scientific article

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

scientific article

The final step in 5.8S rRNA processing is cytoplasmic in Saccharomyces cerevisiae

scientific article published on 14 December 2009

The function and synthesis of ribosomes.

scientific article

The mRNA encoding the yeast ARE-binding protein Cth2 is generated by a novel 3' processing pathway

scientific article

The many pathways of RNA degradation

scientific article (publication date: 20 February 2009)

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

scientific article

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

scholarly article by Wiebke Wlotzka published in July 2011

The nuclear RNA surveillance machinery: the link between ncRNAs and genome structure in budding yeast?

scientific article

The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes

scientific article

The role of small nucleolar ribonucleoproteins in ribosome synthesis

scientific article published on January 1990

The role of the 3′ external transcribed spacer in yeast pre-rRNA processing ⬇️

scientific article published on April 24, 1998

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases

scientific article

The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases

scientific article

Threading the barrel of the RNA exosome

scientific article

Three novel components of the human exosome

scientific article

Trans-acting factors in yeast pre-rRNA and pre-snoRNA processing.

scientific article published on November 1995

Transcription by RNA polymerase III: insights into mechanism and regulation

scientific article

Transcription factor Wilms' tumor 1 regulates developmental RNAs through 3' UTR interaction

scientific article published on 13 March 2017

Transcriptome-Wide Analysis of Protein–RNA and RNA–RNA Interactions in Pathogenic Bacteria

scientific article published on 22 September 2018

Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex

scientific article

Transcriptome-wide analysis of exosome targets

scientific article published on 20 September 2012

Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control

scientific article

Two genes encode 7SL RNAs in the yeast Yarrowia lipolytica

scientific article published on December 1989

U14 small nucleolar RNA makes multiple contacts with the pre-ribosomal RNA

scientific article published on 01 June 1997

UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly

scientific article published on 29 June 2016

VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation.

scientific article published on 05 September 2016

Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis?

scientific article

Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis

scientific article

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis

scientific article

Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3' ETS but not the 5' ETS.

scientific article published in July 1999

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis

scientific article

Yeast Trf5p is a nuclear poly(A) polymerase

scientific article

Yeast contains small nuclear RNAs encoded by single copy genes

article

Yeast nucleoporin mutants are defective in pre-tRNA splicing

scientific article

Yeast pre-rRNA processing and modification occur cotranscriptionally

scientific article

Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis

scientific article (publication date: April 1993)

mRNA stability in eukaryotes

scientific article

mRNA turnover

scientific article

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