List of works by Robert Anthony Martienssen

A blueprint for a Human Epigenome Project: the AACR Human Epigenome Workshop

scientific article

A functional phylogenomic view of the seed plants

scientific article

A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome.

scientific article published on 15 May 2003

ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription

scientific article

ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis

scientific article

Arabidopsis DNA replication initiates in intergenic, AT-rich open chromatin

scientific article published on 23 March 2020

Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27

article

Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.

scientific article

Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA

scientific article published on 17 April 2020

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

scientific article

Architecture of floral branch systems in maize and related grasses

scientific article

Argonaute slicing is required for heterochromatic silencing and spreading

scientific article

Argonautes team up to silence transposable elements in Arabidopsis.

scientific article published on 28 January 2015

CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR.

scientific article

CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing

scientific article

Cell signaling and gene regulation

scientific article published on 07 November 2012

Chromatin reprogramming: gender equality during Arabidopsis germline differentiation

scientific article published on January 2011

Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.

scientific article

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

scientific article published on 14 October 2020

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

scientific article

Computational identification and analysis of novel sugarcane microRNAs

scientific article

Conserved chromosomal functions of RNA interference

scientific article published on 12 February 2020

Control of female gamete formation by a small RNA pathway in Arabidopsis

scientific article

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

scientific article

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Dicer in action at replication-transcription collisions

scientific article published on 09 March 2015

Dicer promotes transcription termination at sites of replication stress to maintain genome stability

scientific article

Differential methylation of genes and repeats in land plants

scientific article

Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats

scientific article

Differential sRNA regulation in leaves and roots of sugarcane under water depletion

scientific article

Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana

scientific article

Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation.

scientific article published on 12 March 2018

Epigenetic natural variation in Arabidopsis thaliana

scientific article

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

scientific article published on February 2009

Epigenomic consequences of immortalized plant cell suspension culture

scientific article

Epigenomic mapping in Arabidopsis using tiling microarrays

scientific article

Establishing epigenetic variation during genome reprogramming.

scientific article published on April 2013

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei

scientific article published on 17 October 2012

Finding the right template: RNA Pol IV, a plant-specific RNA polymerase

scientific article

Gene and enhancer trap tagging of vascular-expressed genes in poplar trees.

scientific article

Gene enrichment in plant genomic shotgun libraries

scientific article

Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens

scientific article published on 29 July 2005

Genes and transposons are differentially methylated in plants, but not in mammals

scientific article

Genetic and epigenetic variation of transposable elements in Arabidopsis

scientific article published on 23 March 2017

Genome and time-of-day transcriptome of <i>Wolffia australiana</i> link morphological minimization with gene loss and less growth control

scientific article published on 23 December 2020

Genome reprogramming and small interfering RNA in the Arabidopsis germline

scientific article

Genome-Wide Analysis of the Arabidopsis thaliana Replication Timing Program

scientific article published on 4 January 2018

Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize.

scientific article

Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis

scientific article

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips

scientific article published on 25 August 2017

Genomic changes in synthetic Arabidopsis polyploids

scientific article

Global effects on gene expression in fission yeast by silencing and RNA interference machineries.

scientific article

Global expression changes resulting from loss of telomeric DNA in fission yeast

scientific article

Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution

scientific article published on 01 January 2008

H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases.

scientific article

Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis

scientific article published on April 2010

Identification of novel high-frequency DNA methylation changes in breast cancer

scientific article

Imprinting: DNA methyltransferases illuminate reprogramming

scientific article published on November 2012

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

scientific article

Kismeth: analyzer of plant methylation states through bisulfite sequencing

scientific article

Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM.

scientific article published on 23 January 2017

Loss of CG Methylation in Marchantia polymorpha Causes Disorganization of Cell Division and Reveals Unique DNA Methylation Regulatory Mechanisms of Non-CG Methylation

scientific article published on 01 December 2018

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm

scientific article

Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation

scientific article published on 27 November 2020

Lsd1 and lsd2 control programmed replication fork pauses and imprinting in fission yeast

scientific article published on 20 December 2012

Macro effects of microRNAs in plants.

scientific article published in January 2003

Maintenance of heterochromatin by RNA interference of tandem repeats ⬇️

scientific article published on 01 November 2003

Maize genome sequencing by methylation filtration

scientific article

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

scientific article published on 31 March 2020

Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing

scientific article

MicroRNA activity in the Arabidopsis male germline.

scientific article published on March 2011

MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis.

scientific article

Multiple roles for small RNAs during plant reproduction.

scientific article

Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination

scientific article published on 21 February 2017

Noncoding RNAs and gene silencing

scientific article published on February 2007

Nucleolar dominance and DNA methylation directed by small interfering RNA

scientific article published on 01 December 2008

Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.

scientific article published on 12 March 2018

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

scientific article

Oncogene-like addiction to aneuploidy in human cancers

scientific article published on 06 July 2023

Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER.

scientific article

Plant stem cells: divergent pathways and common themes in shoots and roots.

scientific article

Pod corn is caused by rearrangement at the Tunicate1 locus

scientific article

Polymerase IV Plays a Crucial Role in Pollen Development in Capsella

scientific article published on 27 January 2020

RNA Polymerase II Is Required for RNAi-Dependent Heterochromatin Assembly

scientific article published in Science

RNA interference and heterochromatin assembly

scientific article

RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe

scientific article

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

scientific article

RNA interference is required for normal centromere function in fission yeast

scientific article published on January 1, 2003

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

scientific article published on 12 June 2013

RNA-induced initiation of transcriptional silencing (RITS) complex structure and function

scientific article published on 18 June 2019

RNAi and heterochromatin assembly

scientific article published on 03 August 2015

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

scientific article published on 16 October 2011

RNAi, heterochromatin and the cell cycle

scientific article published on 06 September 2008

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

scientific article (publication date: 13 September 2002)

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

scientific article published on 20 September 2012

Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function

scientific article (publication date: 2007)

Role of transposable elements in heterochromatin and epigenetic control

scientific article (publication date: 22 July 2004)

S. pombe LSD1 Homologs Regulate Heterochromatin Propagation and Euchromatic Gene Transcription

article

Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps

scientific article

Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication

scientific article

Sequencing the maize genome

scientific article

Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny

scientific article published on 15 June 2012

Small RNA Function in Plants: From Chromatin to the Next Generation

scientific article published on 09 June 2020

SnapShot: small RNA-mediated epigenetic modifications

scientific article published on October 2012

Sorghum genome sequencing by methylation filtration

scientific article

Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.

scientific article

Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway

scientific article published on 01 May 2006

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum

scientific article

Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Δ6-desaturase responsible for the production of γ-linolenic and stearidonic acids in Lemna gibba

scientific article (publication date: 5 December 2013)

Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin

scientific article published on 11 May 2020

The Arabidopsis thaliana mobilome and its impact at the species level

scientific article

The B73 Maize Genome: Complexity, Diversity, and Dynamics

scientific article

The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly

scientific article published on June 2017

The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes

scientific article

The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects

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The developmental role of microRNA in plants

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The expanding world of small RNAs in plants

scientific article

The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation

scientific article

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants

scientific article

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

scientific article

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

scientific article

The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB.

scientific article

The persistence of a silent memory

scientific article published on 27 January 2012

The role of ARGONAUTE1 (AGO1) in meristem formation and identity.

scientific article

Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins

scientific article

Transcriptional reprogramming in cellular quiescence

scientific article published on 12 May 2017

Transgenerational epigenetic inheritance: myths and mechanisms

scientific article

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis

scientific article published on 15 January 2018

Understanding mechanisms of novel gene expression in polyploids

scientific article

Vernalization requires epigenetic silencing of FLC by histone methylation

scientific article

What is finished, and why does it matter

scientific article

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

scientific article

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