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List of works by Thomas Dandekar

'Isotopo' a database application for facile analysis and management of mass isotopomer data

scientific article

13C isotopologue perturbation studies of Listeria monocytogenes carbon metabolism and its modulation by the virulence regulator PrfA

scholarly article

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

scientific article

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

scientific article

A Boolean view separates platelet activatory and inhibitory signalling as verified by phosphorylation monitoring including threshold behaviour and integrin modulation.

scientific article published on 6 March 2013

A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds

scientific article published on 06 April 2016

A comparative analysis of the bistability switch for platelet aggregation by logic ODE based dynamical modeling.

scientific article published in August 2014

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

scientific article (publication date: March 2000)

A java applet for exploring the new higher level classification of eukaryotes with emphasis on the taxonomy of protists

scientific article published in September 2006

A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation

article published in 2011

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number

scientific article published in August 2003

A novel conserved family of nitric oxide synthase?

A semi-quantitative model of Quorum-Sensing in Staphylococcus aureus, approved by microarray meta-analyses and tested by mutation studies

scientific article

A software tool-box for analysis of regulatory RNA elements

scientific article

A versatile structural domain analysis server using profile weight matrices

scientific article published in March 2002

ACKR3 regulates platelet activation and ischemia-reperfusion tissue injury

scientific article published on 05 April 2022

Ab initio tertiary-fold prediction of helical and non-helical protein chains using a genetic algorithm

scientific article published in February 1996

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

scientific article

Affinity purification of ?-endorphin-like material from NG108CC15 hybrid cells by means of the monoclonal ?-endorphin antibody 3-E7.

scientific article published in January 1985

An Ebola, <i>Neisseria and Trypanosoma</i> human protein interaction census reveals a conserved human protein cluster targeted by various human pathogens

scientific article published on 16 September 2021

An antibiotic target ranking and prioritization pipeline combining sequence, structure and network-based approaches exemplified for Serratia marcescens

scientific article published on 14 July 2016

An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach

scientific article published on 15 December 2006

An open source protein gel documentation system for proteome analyses

scientific article published in January 2004

An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data.

scientific article

Analysis of SAGE data in human platelets: features of the transcriptome in an anucleate cell

scientific article

Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus

scientific article

Analyzing ERK 1/2 signalling and targets

scientific article published on 15 June 2016

Analyzing Thiol-Dependent Redox Networks in the Presence of Methylene Blue and Other Antimalarial Agents with RT-PCR-Supported in silico Modeling

scientific article

Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks

scientific article published on 16 July 2019

Ant-App-DB: a smart solution for monitoring arthropods activities, experimental data management and solar calculations without GPS in behavioral field studies

scientific article

Antigen profiling analysis of vaccinia virus injected canine tumors: oncolytic virus efficiency predicted by boolean models

scientific article

Applying experimental data to protein fold prediction with the genetic algorithm

scientific article

Aspergillus fumigatus versus Genus Aspergillus: Conservation, Adaptive Evolution and Specific Virulence Genes

scientific article published in 2021

Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning

scholarly article published 29 March 2018

Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning

scientific article published in PLoS ONE

B-Raf and C-Raf signaling investigated in a simplified model of the mitogenic kinase cascade

scientific article published on November 2005

BioNet: an R-Package for the functional analysis of biological networks

scientific article published on 25 February 2010

Bioinformatical Approaches to Detect and Analyze Protein Interactions

Bioinformatics identifies tardigrade molecular adaptations including the DNA-j family and first steps towards dynamical modelling

scientific article published in 2011

Bioinformatics of cardiovascular miRNA biology

scientific article published on 05 December 2014

C. elegans protein interaction network analysis probes RNAi validated pro-longevity effect of nhr-6, a human homolog of tumor suppressor Nr4a1

scientific article published on 31 October 2019

C60 Fullerene as an Effective Nanoplatform of Alkaloid Berberine Delivery into Leukemic Cells

scientific article published on 08 November 2019

CA/C1 peptidases of the malaria parasites Plasmodium falciparum and P. berghei and their mammalian hosts--a bioinformatical analysis

scientific article published in November 2009

Carbon metabolism of intracellular bacterial pathogens and possible links to virulence

scientific article published on 10 May 2010

Characterization of a Novel Interaction Between Vasodilator-Stimulated Phosphoprotein and Abelson Interactor 1 in Human Platelets: A Concerted Computational and Experimental Approach

scientific article published on 28 January 2010

Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases

scientific article

Cloning of Schizosaccharomyces pombe genes encoding the U1, U2, U3 and U4 snRNAs

scientific article

Comparative genome analysis and pathway reconstruction

scientific article

Comparative proteome analysis of Milnesium tardigradum in early embryonic state versus adults in active and anhydrobiotic state

scientific article

Comparison of the central human and mouse platelet signaling cascade by systems biological analysis

scientific article published on 22 December 2020

Complete genome sequence of the gram-negative probiotic Escherichia coli strain Nissle 1917.

scientific article published on 2 August 2014

Computational methods for the prediction of protein folds

scientific article published on November 1997

Conservation of gene order: a fingerprint of proteins that physically interact

scientific article (publication date: September 1998)

Convergence behaviour and Control in Non-Linear Biological Networks

scientific article published on 11 June 2015

Current efforts in the analysis of RNAi and RNAi target genes

scientific article

Cytokinins for immunity beyond growth, galls and green islands

scientific article published on May 2014

DNA and mRNA sequence of the immune protective DNA ligase I gene match the rev response element of HIV

scientific article

DNA recognition, strand selectivity, and cleavage mode during integrase family site-specific recombination

scientific article published on July 2000

DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation

scientific article published on 07 June 2015

Deciphering the intracellular metabolism of Listeria monocytogenes by mutant screening and modelling

scientific article

Delaying memory decline: different options and emerging solutions

scientific article published on 21 January 2020

Detecting species-site dependencies in large multiple sequence alignments

scientific article published on 6 August 2009

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

scientific article

Developing sustainable software solutions for bioinformatics by the " Butterfly" paradigm.

scientific article

Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization

scientific article

Developmental profiling by mass spectrometry of phosphocholine containing phospholipids in the rat nervous system reveals temporo-spatial gradients

scientific article

Diagnostic value of preoperative CT scan to stratify colon cancer for neoadjuvant therapy

scientific article published on 22 May 2015

Different evolutionary modifications as a guide to rewire two-component systems

scientific article

Differential gene expression in the tardigrade Milnesium tardigradum during anhydrobiosis

article

Differential genome analysis applied to the species-specific features of Helicobacter pylori

scientific article published on April 1998

Distinguishing species

scientific article published on 24 July 2007

Draft Genome Sequence of the Moderately Heat-Tolerant Lactococcus lactis subsp. lactis bv. diacetylactis Strain GL2 from Algerian Dromedary Milk

scientific article published on 19 November 2015

Dynamical modelling of prostaglandin signalling in platelets reveals individual receptor contributions and feedback properties

scientific article published in October 2013

EMT, Stemness, and Drug Resistance in Biological Context: A 3D Tumor Tissue/In Silico Platform for Analysis of Combinatorial Treatment in NSCLC with Aggressive KRAS-Biomarker Signatures

scientific article published in 2022

Establishment of a human 3D lung cancer model based on a biological tissue matrix combined with a Boolean in silico model

scientific article published on 18 December 2013

Eugenol Exerts Apoptotic Effect and Modulates the Sensitivity of HeLa Cells to Cisplatin and Radiation

scientific article published on 03 November 2019

Evaluation and prediction of the HIV-1 central polypurine tract influence on foamy viral vectors to transduce dividing and growth-arrested cells

scientific article published on 9 June 2014

Evaluation of Aspergillus and Mucorales specific T-cells and peripheral blood mononuclear cell cytokine signatures as biomarkers of environmental mold exposure

scholarly article by Lukas Page et al published September 2018 in International Journal of Medical Microbiology

Evidence for the expression of peptides derived from three opioid precursors in NG 108CC15 hybrid cells

scientific article published in January 1987

Exogenous administration of a recombinant variant of TWEAK impairs healing after myocardial infarction by aggravation of inflammation

scientific article

Exonization of active mouse L1s: a driver of transcriptome evolution?

scientific article

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis

scientific article

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

scientific article published in February 2002

FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms

scientific article

Finding the hairpin in the haystack: searching for RNA motifs

scientific article published in February 1995

Fine mapping of the antigen-antibody interaction of scFv215, a recombinant antibody inhibiting RNA polymerase II from Drosophila melanogaster

scientific article published in March 1999

Folding the main chain of small proteins with the genetic algorithm

scientific article published in February 1994

Functional genomics identifies AMPD2 as a new prognostic marker for undifferentiated pleomorphic sarcoma

scientific article published on 04 December 2018

Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data

scientific article

G244E in the canine factor IX gene leads to severe haemophilia B in Rhodesian Ridgebacks

scientific article published on 29 March 2010

Gene expression profiles and protein–protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia

scientific article (publication date: November 2015)

Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs

scientific article published on 11 February 2020

Genome-wide mapping of foamy virus vector integrations into a human cell line

scientific article published on May 2006

GoSynthetic database tool to analyse natural and engineered molecular processes

scientific article

High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis

scientific article

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures

scientific article published on November 2005

Host insulin stimulates Echinococcus multilocularis insulin signalling pathways and larval development.

scientific article published on 27 January 2014

Host-adapted metabolism and its regulation in bacterial pathogens

scientific article published on 27 March 2015

Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies

scientific article

How to Steer and Control ERK and the ERK Signaling Cascade Exemplified by Looking at Cardiac Insufficiency. ⬇️

scientific article published on 2 May 2019

ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae)

article

ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae).

scientific article

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).

scientific article

Identification and functional analysis of a novel yeast small nucleolar RNA

scientific article published on November 1993

Identification of Antifungal Targets Based on Computer Modeling

scientific article published on 04 July 2018

Identification of cellular interactions in RNA and protein molecules

Identification of new therapeutic targets by genome-wide analysis of gene expression in the ipsilateral cortex of aged rats after stroke

scientific article

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

scientific article

Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions

scientific article published in March 1996

Immune response of the ant Camponotus floridanus against pathogens and its obligate mutualistic endosymbiont

scientific article published on 30 March 2011

Improving Protein Structure Prediction by New Strategies: Experimental Insights and the Genetic Algorithm

article published in 1997

Improving genetic algorithms for protein folding simulations by systematic crossover

scientific article published in April 1999

In Silico Designed Axl Receptor Blocking Drug Candidates Against Zika Virus Infection.

scientific article published on 16 May 2018

In Silico Studies Reveal Peramivir and Zanamivir as an Optimal Drug Treatment Even If H7N9 Avian Type Influenza Virus Acquires Further Resistance

scientific article published in 2022

In search of the prototype of nitric oxide synthase

scientific article published in November 2003

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

scientific article

Inhibition of the SR protein-phosphorylating CLK kinases of Plasmodium falciparum impairs blood stage replication and malaria transmission

scientific article (publication date: 2014)

Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem

scientific article published on 11 August 2020

Integrated inference and evaluation of host-fungi interaction networks

scientific article

Integrated network reconstruction, visualization and analysis using YANAsquare.

scientific article

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum

scientific article

Integrated systems view on networking by hormones in Arabidopsis immunity reveals multiple crosstalk for cytokinin

scientific article published on 29 May 2012

Integration of Boolean models exemplified on hepatocyte signal transduction

scientific article published on 20 October 2011

Integration of boolean models on hormonal interactions and prospects of cytokinin-auxin crosstalk in plant immunity

article

Integrative functional genomics decodes herpes simplex virus 1

scientific article published on 27 April 2020

Interactions of methylene blue with human disulfide reductases and their orthologues from Plasmodium falciparum

scientific article

Investigating heat shock proteins of tardigrades in active versus anhydrobiotic state using shotgun proteomics

scientific article published in 2011

Iron regulation and the cell cycle: identification of an iron-responsive element in the 3'-untranslated region of human cell division cycle 14A mRNA by a refined microarray-based screening strategy

scientific article (publication date: 11 August 2006)

Isolation and molecular characterization of a surface-bound proteinase of Entamoeba histolytica

scientific article published on January 1998

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes

scientific article

Jimena: efficient computing and system state identification for genetic regulatory networks

scientific article

L1Base: from functional annotation to prediction of active LINE-1 elements

scientific article

LONELY-GUY Knocks Every Door: Crosskingdom Microbial Pathogenesis

scientific article

Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms

scientific article

Long noncoding RNA Chast promotes cardiac remodeling

scientific article

Lysosomal, cytoskeletal, and metabolic alterations in cardiomyopathy of cathepsin L knockout mice

scientific article published on 24 April 2006

MOLECULAR DYNAMICS SIMULATION OF POPC AND POPE LIPID MEMBRANE BILAYERS ENFORCED BY AN INTERCALATED SINGLE-WALL CARBON NANOTUBE

Mechanisms and molecular adaptation to extreme dehydration in tardigrades: Hsp gene expression in Milnesium tardigradum

article

Medical target prediction from genome sequence: combining different sequence analysis algorithms with expert knowledge and input from artificial intelligence approaches

scientific article published in December 2001

Metabolic adaptation and protein complexes in prokaryotes

scientific article published on 16 November 2012

Metabolic interdependence of obligate intracellular bacteria and their insect hosts

scientific article

Metabolites: a helping hand for pathway evolution?

scientific article

Microinjected glutathione reductase crystals as indicators of the redox status in living cells

scholarly article by Michael A. Keese published in March 1999

Modeling antibiotic and cytotoxic effects of the dimeric isoquinoline IQ-143 on metabolism and its regulation in Staphylococcus aureus, Staphylococcus epidermidis and human cells

scientific article published on 21 March 2011

Modeling system states in liver cells: survival, apoptosis and their modifications in response to viral infection

scientific article

Modelling antibiotic and cytotoxic isoquinoline effects in Staphylococcus aureus, Staphylococcus epidermidis and mammalian cells

scientific article published on 27 November 2014

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species

scientific article

Modelling interaction sites in protein domains with interaction profile hidden Markov models

scientific article published on 25 September 2006

Modelling phagosomal lipid networks that regulate actin assembly

scientific article

Molecular characterization of antimicrobial peptide genes of the carpenter ant Camponotus floridanus

scientific article

Molecular mechanisms of tolerance in tardigrades: new perspectives for preservation and stabilization of biological material

scientific article published on July 2009

Molecular modeling of amoebapore and NK-lysin: a four-alpha-helix bundle motif of cytolytic peptides from distantly related organisms

scientific article

Mutational analysis of Schizosaccharomyces pombe U4 snRNA by plasmid exchange

scientific article published on August 1, 1992

NO-bound myoglobin: structural diversity and dynamics of the NO ligand

scientific article published in February 2004

New insights into anhydrobiotic organisms: Perspectives for preservation and stabilization of biological material

scientific article published in 2008

New molecular data for tardigrade phylogeny, with the erection ofParamacrobiotusgen. nov

scholarly article by Roberto Guidetti et al published November 2009 in Journal of Zoological Systematics and Evolutionary Research

New trends in pharmacogenomic strategies against resistance development in microbial infections

scientific article

Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools

scientific article published on 26 December 2016

Olbers' paradox

scientific article published in Nature

Omics and bioinformatics applied to vaccine development against Borrelia

article

Opiates induce long-term increases in prodynorphin-derived peptide levels in the guinea-pig myenteric plexus

scientific article

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism

scientific article

Perforin-like protein PPLP2 permeabilizes the red blood cell membrane during egress of Plasmodium falciparum gametocytes

scientific article (publication date: May 2014)

Pharmacogenomic Strategies Against Microbial Resistance: From Bright to Bleak to Innovative ⬇️

scientific article published on September 1, 2010

Pharmacogenomic strategies against resistance development in microbial infections

scientific article published on June 2004

Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data

scientific article

Placozoa: at least two

article by Matthias Wolf et al published 1 January 2007 in Biologia

PlanktoVision--an automated analysis system for the identification of phytoplankton

scientific article

Platelet Protein Interactions

PlateletWeb: a systems biologic analysis of signaling networks in human platelets

scientific article

Pore-forming peptides of Entamoeba dispar. Similarity and divergence to amoebapores in structure, expression and activity

scientific article

Potential of genetic algorithms in protein folding and protein engineering simulations

scientific article published in October 1992

Predicting function: from genes to genomes and back

scientific article

Probing Flp: a new approach to analyze the structure of a DNA recognizing protein by combining the genetic algorithm, mutagenesis and non-canonical DNA target sites

scientific article published on July 1997

Probing the unknowns in cytokinin-mediated immune defense in Arabidopsis with systems biology approaches

scientific article published on 13 February 2014

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances

scholarly article by J. Friedrich et al published 27 January 2005 in Bioinformatics

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

scientific article

Progeria and Aging—Omics Based Comparative Analysis

scientific article published in 2022

Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL.

scientific article

Proteomic analysis of tardigrades: towards a better understanding of molecular mechanisms by anhydrobiotic organisms

scientific article

Quality-of-life assessment in the old using the WHOQOL 100: differences between patients with senile dementia and patients with cancer.

scientific article

Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization toward higher-order oligomers

scientific article

RIP death domain structural interactions implicated in TNF-mediated proliferation and survival

scientific article published in May 2006

RNA ligands selected by cleavage stimulation factor contain distinct sequence motifs that function as downstream elements in 3'-end processing of pre-mRNA.

scientific article published on October 1997

Rapid proliferation due to better metabolic adaptation results in full virulence of a filament-deficient Candida albicans strain

scientific article published on 23 June 2021

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

scientific article published on September 2000

Refined Genetic Algorithm Simulations to Model Proteins

article

Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus

scientific article

Ribosomal RNA phylogenetics: the third dimension

scholarly article by Alexander Keller et al published 1 January 2010 in Biologia

Riboswitch finder--a tool for identification of riboswitch RNAs

scientific article published on July 2004

Robustness and accuracy of functional modules in integrated network analysis

article

Salmonella enterica: a surprisingly well-adapted intracellular lifestyle

scientific article published on 3 May 2012

Salmonella-how a metabolic generalist adopts an intracellular lifestyle during infection

scientific article

Schizosaccharomyces pombe U4 small nuclear RNA closely resembles vertebrate U4 and is required for growth

scientific article

Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing

scientific article published on 22 July 2015

Shared components of protein complexes--versatile building blocks or biochemical artefacts?

scientific article published in December 2004

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

scientific article (publication date: 2011)

Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling

scientific article

Software applications toward quantitative metabolic flux analysis and modeling

scientific article

Solvent entropy-driven searching for protein modeling examined and tested in simplified models

scientific article published in May 2001

Staphylococcus aureus physiological growth limitations: insights from flux calculations built on proteomics and external metabolite data

scientific article

Stem-cell-triggered immunity safeguards cytokinin enriched plant shoot apexes from pathogen infection

scientific article

Stress response in tardigrades: differential gene expression of molecular chaperones

scientific article

Structure--function characterization of cellulose synthase: relationship to other glycosyltransferases

scientific article

Suspected utility of enzymes with multiple activities in the small genome Mycoplasma species: the replacement of the missing "household" nucleoside diphosphate kinase gene and activity by glycolytic kinases

scientific article published in January 2002

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

scientific article

Synergy of Chemo- and Photodynamic Therapies with C60 Fullerene-Doxorubicin Nanocomplex

scientific article published on 30 October 2019

Synthetic Rewiring of Plant CO2 Sequestration Galvanizes Plant Biomass Production

scientific article published on 17 January 2020

Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach

scientific article published on 17 June 2016

Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches

scientific article published in January 1998

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades

scientific article

The 3'-untranslated region of the human estrogen receptor alpha gene mediates rapid messenger ribonucleic acid turnover

scientific article published on August 2000

The Genetic Algorithm Applied as a Modelling Tool to Predict the Fold of Small Proteins with Different Topologies

The ITS2 Database

scientific article published on 12 March 2012

The ITS2 Database II: homology modelling RNA structure for molecular systematics

scientific article published on 11 October 2007

The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays

scientific article

The New Genetic Landscape of Cushing's Disease: Deubiquitinases in the Spotlight

scientific article published on 08 November 2019

The Plant Hormone Cytokinin Confers Protection against Oxidative Stress in Mammalian Cells

scientific article

The highly attenuated oncolytic recombinant vaccinia virus GLV-1h68: comparative genomic features and the contribution of F14.5L inactivation

scientific article published on 22 August 2009

The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

scientific article published on July 2006

The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'.

scientific article

The nexus between growth and defence signalling: auxin and cytokinin modulate plant immune response pathways

scientific article published on 24 June 2015

The role of auxin-cytokinin antagonism in plant-pathogen interactions

scientific article

Thirty-three nucleotides of 5' flanking sequence including the 'TATA' box are necessary and sufficient for efficient U2 snRNA transcription in Schizosaccharomyces pombe

scientific article published in July 1991

Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation.

scientific article

Toward Zero Variance in Proteomics Sample Preparation: Positive-Pressure FASP in 96-Well Format (PF96) Enables Highly Reproducible, Time- and Cost-Efficient Analysis of Sample Cohorts

publication published on 22 March 2022

Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection

scientific article published on 3 February 2012

Toward computer-based cleavage site prediction of cysteine endopeptidases

scientific article

Trans-splicing of pre-mRNA is predicted to occur in a wide range of organisms including vertebrates

scientific article published in August 1990

Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations

scientific article published on 23 April 2012

Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer

scientific article

Translational regulation of mammalian and Drosophila citric acid cycle enzymes via iron-responsive elements

scientific article

Two nucleus-localized CDK-like kinases with crucial roles for malaria parasite erythrocytic replication are involved in phosphorylation of splicing factor

scientific article (publication date: May 2011)

Understanding platelets. Lessons from proteomics, genomics and promises from network analysis

article

Use of functional highly purified human platelets for the identification of new proteins of the IPP signaling pathway

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism

article

Using compensatory base change analysis of internal transcribed spacer 2 secondary structures to identify three new species in Paramacrobiotus (Tardigrada)

article

Variation and evolution of the citric-acid cycle: a genomic perspective.

scientific article

Wall teichoic acid structure governs horizontal gene transfer between major bacterial pathogens.

scientific article published on January 2013

When genetic distance matters: measuring genetic differentiation at microsatellite loci in whole-genome scans of recent and incipient mosquito species

scientific article

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes

scientific article published on 25 August 2006

XML schemas for common bioinformatic data types and their application in workflow systems

scientific article

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities

scientific article

Yeast U3 localization and correct sequence (snR17a) and promotor activity (snR17b) identified by homology search ⬇️

scientific article published on January 1, 1991

inGeno--an integrated genome and ortholog viewer for improved genome to genome comparisons

scientific article published on 20 October 2006

pH but not Ca<sup>2+</sup> Waves Propagate Membrane Potential Oscillations Throughout the Pollen Tube

scientific article published in 2023

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