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List of works by Rudolf Amann

"Candidatus Ethanoperedens," a Thermophilic Genus of Archaea Mediating the Anaerobic Oxidation of Ethane

scientific article published on 21 April 2020

16S rRNA Targeted Probes for the Identification of Bacterial Strains Isolated from Cultures of the Toxic Dinoflagellate Alexandrium tamarense

scientific article published on 01 April 2000

16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides

scientific article published on 01 April 2000

A CARD-FISH protocol for the identification and enumeration of epiphytic bacteria on marine algae

scientific article

A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats

scientific article published on June 2005

A conspicuous nickel protein in microbial mats that oxidize methane anaerobically

scientific article

A marine microbial consortium apparently mediating anaerobic oxidation of methane

scientific article published in Nature

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

scientific article

A new moderately thermophilic and high sulfide tolerant biotype of Marichromatium gracile, isolated from tidal sediments of the German Wadden Sea: Marichromatium gracile biotype thermosulfidiphilum

scientific article published on 25 December 2008

A new scope for Systematic and Applied Microbiology

scientific article published on 10 January 2006

A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria.

scientific article

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

scholarly article

Abundance and diversity of Planctomycetes in a Tyrrhenian coastal system of central Italy

scientific article published in 2011

Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages

scientific article published in March 2004

Activity, Distribution, and Diversity of Sulfate Reducers and Other Bacteria in Sediments above Gas Hydrate (Cascadia Margin, Oregon)

article by Katrin Knittel et al published July 2003 in Geomicrobiology Journal

Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy

scientific article published on 06 February 2020

After All, Only Millions?

scientific article

Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.

scientific article

Alpha- and beta-Proteobacteria control the consumption and release of amino acids on lake snow aggregates

scientific article

An alternative polysaccharide uptake mechanism of marine bacteria.

scientific article published on 21 March 2017

An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments

scientific article published on 01 November 2004

An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization

scientific article

Anaerobic utilization of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the beta-subclass of Proteobacteria.

scientific article

Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach

scientific article

Ancestry and adaptive radiation of Bacteroidetes as assessed by comparative genomics

scientific article published on 27 January 2020

Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.

scientific article

Application of 23S rDNA-targeted oligonucleotide probes specific for enterococci to water hygiene control

scientific article published on 01 August 1998

Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment

scientific article

Application of tetranucleotide frequencies for the assignment of genomic fragments

scientific article published in September 2004

Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria.

scientific article

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

scientific article (publication date: October 2012)

Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?

scientific article

Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities

scientific article published in 2023

Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization

scientific article

Automated sample area definition for high-throughput microscopy

scientific article published on 15 March 2011

Bacterial Community Dynamics during Start-Up of a Trickle-Bed Bioreactor Degrading Aromatic Compounds ⬇️

scientific article published on March 1, 1998

Bacterial diversity in the South Adriatic Sea during a strong, deep winter convection year.

scientific article

Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field

scientific article

Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

scientific article

Bacterioplankton diversity and community composition in the Southern Lagoon of Venice

scientific article

Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount

scientific article published on 13 March 2020

Beta-subunit of ATP-synthase: a useful marker for studying the phylogenetic relationship of eubacteria

scientific article published in October 1988

Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria

scientific article published on April 2009

Candidatus Abditibacter, a novel genus within the Cryomorphaceae, thriving in the North Sea

scientific article published on 25 May 2020

Cell surface proteome of the marine planctomycete Rhodopirellula baltica

scientific article

Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir

scientific article

Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques

scientific article published on 01 April 2000

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis

scholarly article

Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake

scientific article

Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer

scientific article

Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin

scientific article

Colonization in the photic zone and subsequent changes during sinking determine bacterial community composition in marine snow

scientific article

Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization.

scientific article published on June 1996

Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake.

scientific article

Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm

scientific article

Community structure and activity of sulfate-reducing bacteria in an intertidal surface sediment: a multi-method approach

article by E Llobet-Brossa et al published 2002 in Aquatic Microbial Ecology

Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments.

scientific article

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

scientific article

Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton

scientific article

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization.

scientific article

Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea

scientific article

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea

scientific article published on February 2002

Comparison of rRNA and polar-lipid-derived fatty acid biomarkers for assessment of 13C-substrate incorporation by microorganisms in marine sediments.

scientific article published on August 2006

Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds.

scientific article published on 15 April 2013

Complete genome sequence of the marine planctomycete Pirellula sp. strain 1

scientific article

Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium

scientific article

Concepts and software for a rational design of polynucleotide probes.

scientific article published in February 2011

Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum

scientific article

Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage

scientific article published in February 1997

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean.

scientific article

Corrigendum to "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov" [Syst. Appl. Microbiol. 39 (7) (2016) 491-492].

scientific article

Corrigendum to "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov." [Syst. Appl. Microbiol. 39 (5) (2016) 281-296].

scientific article published on 14 September 2016

Crystal ball: fluorescence in situ hybridization in the age of super-resolution microscopy

scientific article published on 07 November 2012

Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology

scientific article published on 18 November 2019

Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods.

scientific article

Culturability and In situ abundance of pelagic bacteria from the North Sea

scientific article

Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter

scientific article

Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.

scientific article

Detection and identification of Candida species in experimentally infected tissue and human blood by rRNA-specific fluorescent in situ hybridization ⬇️

scientific article published on November 1, 1997

Determination of total protein content of bacterial cells by SYPRO staining and flow cytometry

scientific article published in July 1999

Determining the bacterial cell biology of Planctomycetes

scientific article

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

scientific article published on 10 December 2008

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

scientific article

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea.

scientific article published on 13 April 2014

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

scientific article published on 27 June 2016

Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom

scientific article published in 2023

Distinct ecotypes within a natural haloarchaeal population enable adaptation to changing environmental conditions without causing population sweeps

scientific article published on 20 December 2020

Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean

scientific article

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

scientific article

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

scientific article

Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea

scientific article published on 16 March 2007

Diversity and biomass dynamics of unicellular marine fungi during a spring phytoplankton bloom

scientific article published on 17 November 2020

Diversity and distribution of methanotrophic archaea at cold seeps

scientific article

Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice.

scientific article published in November 2003

Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea.

scientific article published in March 2005

Dual symbiosis in a Bathymodiolus sp. mussel from a methane seep on the Gabon continental margin (Southeast Atlantic): 16S rRNA phylogeny and distribution of the symbionts in gills

scientific article

Erratum to "First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarod is sp. nov" [Syst. Appl. Microbiol. 42 (2019) 457-467]

scientific article published on 04 November 2019

Evaluation of the use of multilocus sequence analysis (MLSA) to resolve taxonomic conflicts within the genus Marichromatium.

scientific article published on 12 February 2010

Extensive Microbial Processing of Polysaccharides in the South Pacific Gyre via Selfish Uptake and Extracellular Hydrolysis

scientific article published on 18 December 2020

Extremely halophilic bacteria in crystallizer ponds from solar salterns

scientific article

Fate of heterotrophic microbes in pelagic habitats: focus on populations

scientific article

Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains

scientific article

First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov

scientific article published on 12 April 2019

Flow cytometric analysis of activated sludge with rRNA-targeted probes ⬇️

scientific article published on May 1, 1995

Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

scientific article

Flow sorting of marine bacterioplankton after fluorescence in situ hybridization

scientific article

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

scientific article

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

scientific article

Gene probes and their use in microbiology ⬇️

scientific article published on 01 May 1992

GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms

scientific article

Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

scientific article

Genomic comparison between members of the Salinibacteraceae family, and description of a new species of Salinibacter (Salinibacter altiplanensis sp. nov.) isolated from high altitude hypersaline environments of the Argentinian Altiplano

scientific article published on 31 January 2018

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

scientific article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel_I_6 consumes alpha-mannan from fungi

scientific article published on 12 April 2022

Graphical representation of ribosomal RNA probe accessibility data using ARB software package

scientific article

Growth and in situ detection of a pathogenic Escherichia coli in biofilms of a heterotrophic water-bacterium by use of 16S- and 23S-rRNA- directed fluorescent oligonucleotide probes

scientific article published in 1994

Growth patterns of two marine isolates: adaptations to substrate patchiness?

scientific article

HISH-SIMS analysis of bacterial uptake of algal-derived carbon in the Río de la Plata estuary

scientific article published on 29 September 2012

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

scientific article

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting

scientific article published on 22 March 2016

High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes

scientific article

High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy).

scientific article

High bacterial diversity in permanently cold marine sediments

scientific article

High local and global diversity of Flavobacteria in marine plankton

scientific article

High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters

scientific article

High-throughput cultivation of heterotrophic bacteria during a spring phytoplankton bloom in the North Sea

scientific article published on 27 January 2020

Highly diverse flavobacterial phages isolated from North Sea spring blooms

scientific article published in 2021

How Systematic and Applied Microbiology will deal with two nomenclature codes (ICNP and SeqCode) for prokaryotes, and which classification standards are recommended for new taxa descriptions

scientific article published in 2023

Hydrogen is an energy source for hydrothermal vent symbioses

scientific article (publication date: 10 August 2011)

Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge

scientific article

Identification and activity of acetate-assimilating bacteria in diffuse fluids venting from two deep-sea hydrothermal systems

scientific article published on 13 October 2014

Identification and in situ Detection of Gram-negative Filamentous Bacteria in Activated Sludge

scientific article published in 1994

Identification in situ and phylogeny of uncultured bacterial endosymbionts ⬇️

scientific article published on May 9, 1991

Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton.

scientific article

Identification of Whole Fixed Bacterial Cells with Nonradioactive 23S rRNA-Targeted Polynucleotide Probes.

scientific article

Identification of Yoghurt-spoiling Yeasts with 18S rRNA-targeted Oligonucleotide Probes

scientific article published in 1997

Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes

scientific article published on 04 March 2004

Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides

scientific article published on December 1, 1991

Identification of the dominant sulfate-reducing bacterial partner of anaerobic methanotrophs of the ANME-2 clade

scientific article

Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes ⬇️

scientific article published on September 1, 1994

In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica

scientific article published on 25 July 2019

In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes

scientific article

In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains.

scientific article

In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes

scientific article

In situ analysis of microbial consortia in activated sludge using fluorescently labelled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy.

scientific article published on December 1994

In situ analysis of nitrifying bacteria in sewage treatment plants

scholarly article published in July 1996

In situ characterization of the microbial consortia active in two wastewater treatment plants

article

In situ detection of Escherichia coli cells containing ColE1-related plasmids by hybridization to regulatory RNA II

scientific article published on 01 February 1999

In situ distribution and activity of nitrifying bacteria in freshwater sediment

scientific article published on 01 September 2003

In situ methods for assessment of microorganisms and their activities.

scientific article

In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides

scientific article published on 01 October 1994

In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides

scientific article published on 01 May 1995

In situ substrate conversion and assimilation by nitrifying bacteria in a model biofilm

scientific article published on 01 September 2005

In situ visualization of glycoside hydrolase family 92 genes in marine flavobacteria

scientific article published in 2021

Indications for algae-degrading benthic microbial communities in deep-sea sediments along the Antarctic Polar Front

scholarly article by S. Emil Ruff published in October 2014

Insights into the genome of large sulfur bacteria revealed by analysis of single filaments

scientific article

Insights into the genomes of archaea mediating the anaerobic oxidation of methane

scientific article published in December 2005

Intraspecific comparative analysis of the species Salinibacter ruber

scientific article published on 15 March 2005

Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?

scientific article

Isolation and Taxonomic Characterization of a Halotolerant, Facultatively Iron-reducing Bacterium

article

Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton

scientific article

Isolation of small-subunit rRNA for stable isotopic characterization.

scientific article published in August 2002

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

scientific article

Legionella -like slender rods multiplying within a strain of Acanthamoeba sp. isolated from drinking water ⬇️

scientific article published on 01 January 1998

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea

scientific article (publication date: 24 April 2007)

Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.

scientific article published in May 2001

Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms.

scientific article

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

scientific article

Massive regime shifts and high activity of heterotrophic bacteria in an ice-covered lake

scientific article

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group

scientific article

Metagenomic approach to the study of halophages: the environmental halophage 1.

scientific article

Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

scientific article published on 6 April 2018

Microbial Community Response to Simulated Petroleum Seepage in Caspian Sea Sediments

scientific article

Microbial Ecology of an Extreme Acidic Environment, the Tinto River

scientific article published in 2003

Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand)

scientific article

Microbial community response during the iron fertilization experiment LOHAFEX.

scientific article

Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin, Wadden Sea.

scientific article published on 23 January 2006

Microbial ecology of an extreme acidic environment, the Tinto River.

scientific article

Microbial life on a sand grain: from bulk sediment to single grains

scientific article

Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys

scientific article

Microbial manganese and sulfate reduction in Black Sea shelf sediments

scientific article

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

scientific article published on 30 June 2021

Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses

scientific article published on 21 January 2019

Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane

scientific article published in August 2002

Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations.

scientific article

Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors.

scientific article

Modern methods in subsurface microbiology: in situ identification of microorganisms with nucleic acid probes

scientific article published in 1997

Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas

scientific article published on 01 May 2007

Monitoring precursor 16S rRNAs of Acinetobacter spp. in activated sludge wastewater treatment systems

scientific article

Monitoring the community structure of wastewater treatment plants: a comparison of old and new techniques

article

Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing

scientific article

Moving the cataloguing of the "uncultivated majority" forward

scientific article published on 10 December 2018

Multilevel analysis of the bacterial diversity along the environmental gradient Río de la Plata–South Atlantic Ocean

article

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

scientific article

New aspects of the symbiosis in the provannid snail Ifremeria nautilei from the North Fiji Back Arc Basin ⬇️

Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes

scientific article published in 2022

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

scientific article published on 4 April 2017

Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group

scientific article published on 15 February 2022

Nitrification in freshwater sediments as influenced by insect larvae: quantification by microsensors and fluorescence in situ hybridization

scientific article published on 22 April 2004

North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches

scientific article published in 2021

Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment.

scientific article

Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink

scientific article published on October 2006

Nucleic Acid Probes and Their Application in Environmental Microbiology

scientific article published in 2015

Obligate intracellular bacterial parasites of acanthamoebae related to Chlamydia spp

scientific article

On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre

scientific article published on 01 July 2019

Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes

scientific article

Optimizing fluorescent in situ hybridization with rRNA‐targeted oligonucleotide probes for flow cytometric identification of microorganisms ⬇️

scientific article published on January 1, 1993

Past and future species definitions for Bacteria and Archaea.

scientific article published on 20 February 2015

Permeability shapes bacterial communities in sublittoral surface sediments.

scientific article published on 24 January 2017

Phylogenetic Analysis of Uncultured Magnetotactic Bacteria from the Alpha-Subclass of Proteobacteria

article

Phylogenetic Diversity and Identification of Nonculturable Magnetotactic Bacteria

article

Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine Arctic sediments.

scientific article published on September 1999

Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes.

scientific article published in February 1998

Phylogenetic analysis and in situ identification of bacteria in activated sludge ⬇️

scientific article published on July 1, 1997

Phylogenetic diversity of bacterial endosymbionts in the gutless marine oligochete Olavius loisae (Annelida)

scientific article published in 1999

Phylogenetic position of Salinibacter ruber based on concatenated protein alignments

scientific article published on 12 September 2006

Phylogeny and Diversity of Achromatium oxaliferum

scientific article published on 01 February 1999

Phylogeny and Identification In Situ of Nevskia ramosa ⬇️

scientific article published on May 1, 1998

Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge

scientific article published on 01 April 1999

Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5'-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (oligochaeta) from Bermuda and the Bahamas

scientific article

Picobenthic cyanobacterial populations revealed by 16S rRNA-targeted in situ hybridization

scientific article

Polynucleobacter necessarius, an obligate bacterial endosymbiont of the hypotrichous ciliate Euplotes aediculatus, is a member of the beta-subclass of Proteobacteria

scientific article published in January 1996

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms

scientific article published on 19 February 2020

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system

scientific article

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

scientific article published on 16 December 2010

Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture.

scientific article

Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities

scientific article published on 18 October 2019

Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica).

scientific article

Pulsed inputs of high molecular weight organic matter shift the mechanisms of substrate utilisation in marine bacterial communities

scholarly article

Quantification of Tinto River sediment microbial communities: importance of sulfate-reducing bacteria and their role in attenuating acid mine drainage

scientific article

Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR.

scientific article published in August 2003

Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria

scientific article published on 22 January 2021

Quantitative molecular analysis of the microbial community in marine arctic sediments (Svalbard).

scientific article

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

scientific article published on 13 July 2015

Rapid turnover of dissolved DMS and DMSP by defined bacterioplankton communities in the stratified euphotic zone of the North Sea

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

scientific article published on 7 April 2016

Release LTPs104 of the All-Species Living Tree

scientific article

Reply to "The Underestimation of Global Microbial Diversity".

scientific article published on 27 September 2016

Reply to the commentary "Uncultivated microbes-in need of their own nomenclature?"

scientific article published on 15 January 2018

Response of sulfate-reducing bacteria to an artificial oil-spill in a coastal marine sediment

scientific article published on 17 March 2011

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

scientific article

Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov.

scientific article

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

scientific article

Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology

article published in 2000

Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes

scientific article

Salinibacter

scientific article published in 2015

Salinibacter Ruber: Genomics and Biogeography

conference paper

Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds

scientific article

Seasonal Community and Population Dynamics of Pelagic Bacteria and Archaea in a High Mountain Lake ⬇️

scientific article published on November 1, 1998

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation

scientific article published on 07 December 2018

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

scientific article published on 11 February 2013

Short-term changes in polysaccharide utilization mechanisms of marine bacterioplankton during a spring phytoplankton bloom

scientific article published on 03 March 2020

Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria

scientific article published on September 2004

Single cell fluorescence imaging of glycan uptake by intestinal bacteria

scientific article published on 01 April 2019

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

scientific article published on 14 March 2013

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

scientific article published on May 2008

Single-stranded conformational polymorphism for separation of mixed rRNAS (rRNA-SSCP): a new method for profiling microbial communities

scientific article published on 7 February 2006

Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content

scientific article published on 01 May 1999

Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm

scientific article published in May 2003

Studies of the bacterial endosymbionts of "anaerobic protozoa" using fluorescently-labelled rRNA-targetted oligonucleotide probes

scientific article published on 01 August 1994

Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

scientific article

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom

scientific article

Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts

scientific article

Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan

scientific article

Symbiosis insights through metagenomic analysis of a microbial consortium

scientific article

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Temporal variability of coastal Planctomycetes clades at Kabeltonne station, North Sea

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The Biogeochemistry of Marine Polysaccharides: Sources, Inventories, and Bacterial Drivers of the Carbohydrate Cycle

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The Ellrott grab: A small, lightweight sediment sampler for collecting undisturbed sandy sediments

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The abundance of Zoogloea ramigera in sewage treatment plants

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The biogeochemistry, stable isotope geochemistry, and microbial community structure of a temperate intertidal mudflat: an integrated study

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The design and application of ribosomal RNA-targeted, fluorescent oligonucleotide probes for the identification of endosymbionts in protozoa

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The effect of nucleobase-specific fluorescence quenching on in situ hybridization with rRNA-targeted oligonucleotide probes.

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The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments

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The genus Allochromatium (Chromatiales Chromatiaceae) revisited: a study on its intragenic structure based on multilocus sequence analysis (MLSA) and DNA-DNA hybridization (DDH).

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The phylogenetic status of<i>Sarcobium lyticum</i>, an obligate intracellular bacterial parasite of small amoebae

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The species concept for prokaryotes

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The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons

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Thermophilic anaerobic oxidation of methane by marine microbial consortia

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Think big: the international dimension of environmental microbiology

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Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychrophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacteria isolated from marine Arctic sediments

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Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments

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Towards estimating the number of strains that make up a natural bacterial population

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Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteins

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Two decades of fluorescence in situ hybridization in systematic and applied microbiology

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Uncultivated microbes in need of their own taxonomy.

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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

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Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.

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Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

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Utilization of tmRNA sequences for bacterial identification

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Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms

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rRNA based identification and detection systems for rhizobia and other bacteria

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rRNA-Targeted Oligonucleotide Probes for the Identification of Genuine and Former Pseudomonads

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