List of works - Egon Willighagen

A novel infrastructure for chemical safety predictions with focus on human health

Adding citations between existing articles in Wikidata

manuscript by Egon Willighagen

Adoption of the Citation Typing Ontology by the Journal of Cheminformatics ⬇️

scientific article published on 28 July 2020

Analyzing your internet applications' log files ⬇️

first article in a series about using Lire to analyze log files of internet server applications

Analyzing your internet applications' log files II - configuring your reports ⬇️

second article in a series about using Lire to analyze log files of internet server applications

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020

Beautifying Data in the Real World ⬇️

chapter from a book from 2009

BioHackEU23 report: Extending interoperability of experimental data using modular queries across biomedical resources

BioHackEU24 report: ORCID and ROR identifiers in BioHackrXiv reports

Bioinformatics-based cancer research have wide toxicological applicability

Bioschemas Resource Index for Chem and Plants

CDK-Taverna 2.0: migration and enhancements of an open-source pipelining solution

Cheminformatics for Users

chapter in a proceedings

CiteULike CiTO annotations

dataset

Collaborative Computational Technologies for Biomedical Research

Computational toxicology using OpenTox & Bioclipse

Developing a novel QSAR framework for nanomaterial toxicity

article

Edition 1.4.1-0 of Groovy Cheminformatics with the Chemistry Development Kit

Enhancement and Reusage of Biomedical Knowledge Graph Subsets

FAIR blog-to-blog citations

Factors influencing developmental neurotoxicity study outcome in the bisphenol A case

Giving metabolites (and lipids) a chemical and biological context with open science

scientific article published on 26 August 2024

Glycolysis and Gluconeogenesis

metabolic pathway (mus musculus)

INTOXICOM Workshop Report: FAIRification of Toxicological Research Output: Leveraging ELIXIR Resources

Introducing WikiPathways to link molecular pathways to adverse outcome pathways to support regulatory risk assessment

scientific article

Introduction to Pharmaceutical Bioinformatics

Third edition of the book originally published in 2010

Journal of Cheminform in 2020 (a personal perspective)

Learning cheminformatics

Linking Wikidata to the Rest of the Semantic Web ⬇️

scientific article (publication date: 19 February 2017)

Metadata handling for BioHackathon publications through BioHackrXiv

Open Science Feedback on the Guidance on the Implementation of Plan S

Open science in an open access world

OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment

Probabilistic toxicogenomics studies in vitro

Rendering co-author graphs using linked-open-data from Wikidata

Research Output Management

SARS-CoV-2-Queries

Wikidata-based dashboard for tracking clinical and scholarly data about the SARS-CoV-2 virus and pandemic

Scholia - March 2017

software package

Sharing dose response data and analysis across the SEURAT-1 cluster

Summary of the Spring 2014 NSC Database Survey

report from 2014

The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework

publication published on 14 February 2022

The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics.

abstract about a scientific article published in 2003

The EU NanoSafety Cluster as Linked Data visualized with Scholia

newsletter article

Three-Dimensional (3D) Molecular Representations

VLEERMUIS

article in a Dutch computer journal with source code about a bat

Wikidata Queries around the SARS-CoV-2 virus and pandemic ⬇️

online book

Wikidata: empowering metabolomics research ⬇️

scientific abstract from May 2022

List of works by Egon Willighagen

A novel infrastructure for chemical safety predictions with focus on human health

Adding citations between existing articles in Wikidata

Adoption of the Citation Typing Ontology by the Journal of Cheminformatics ⬇️

Analyzing your internet applications' log files ⬇️

Analyzing your internet applications' log files II - configuring your reports ⬇️

Author response: Wikidata as a knowledge graph for the life sciences

Beautifying Data in the Real World ⬇️

BioHackEU23 report: Extending interoperability of experimental data using modular queries across biomedical resources

BioHackEU24 report: ORCID and ROR identifiers in BioHackrXiv reports

Bioinformatics-based cancer research have wide toxicological applicability

Bioschemas Resource Index for Chem and Plants

CDK-Taverna 2.0: migration and enhancements of an open-source pipelining solution

Cheminformatics for Users

CiteULike CiTO annotations

Collaborative Computational Technologies for Biomedical Research

Computational toxicology using OpenTox & Bioclipse

Developing a novel QSAR framework for nanomaterial toxicity

Edition 1.4.1-0 of Groovy Cheminformatics with the Chemistry Development Kit

Enhancement and Reusage of Biomedical Knowledge Graph Subsets

FAIR blog-to-blog citations

Factors influencing developmental neurotoxicity study outcome in the bisphenol A case

Giving metabolites (and lipids) a chemical and biological context with open science

Glycolysis and Gluconeogenesis

INTOXICOM Workshop Report: FAIRification of Toxicological Research Output: Leveraging ELIXIR Resources

Introducing WikiPathways to link molecular pathways to adverse outcome pathways to support regulatory risk assessment

Introduction to Pharmaceutical Bioinformatics

Journal of Cheminform in 2020 (a personal perspective)

Learning cheminformatics

Linking Wikidata to the Rest of the Semantic Web ⬇️

Metadata handling for BioHackathon publications through BioHackrXiv

Open Science Feedback on the Guidance on the Implementation of Plan S

Open science in an open access world

OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment

Probabilistic toxicogenomics studies in vitro

Rendering co-author graphs using linked-open-data from Wikidata

Research Output Management

SARS-CoV-2-Queries

Scholia - March 2017

Sharing dose response data and analysis across the SEURAT-1 cluster

Summary of the Spring 2014 NSC Database Survey

The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework

The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics.

The EU NanoSafety Cluster as Linked Data visualized with Scholia

Three-Dimensional (3D) Molecular Representations

Three-Dimensional (3D) Molecular Representations

VLEERMUIS

Wikidata Queries around the SARS-CoV-2 virus and pandemic ⬇️

Wikidata: empowering metabolomics research ⬇️

eNanoMapper – A database and ontology framework for design and safety assessment of nanomaterials