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List of works by Karen E. Nelson

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Diversity of the human intestinal microbial flora

scientific article
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

scientific article
Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article
The complete genome sequence of the gastric pathogen Helicobacter pylori

scientific article
Environmental genome shotgun sequencing of the Sargasso Sea

scientific article (publication date: 2 April 2004)
Metagenomic analysis of the human distal gut microbiome

scientific article
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article
The minimum information about a genome sequence (MIGS) specification

scientific article
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

scientific article
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

scientific article
Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

scientific article
Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

scientific article
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article
Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

scientific article published on 11 November 2005
Functional metagenomic profiling of nine biomes

scientific article (publication date: 3 April 2008)
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article
Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

scientific article
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article
Molecular analysis of the bacterial microbiota in the human stomach

scientific article published on 4 January 2006
Complete genome sequence of the Q-fever pathogen Coxiella burnetii

scientific article
A catalog of reference genomes from the human microbiome

scientific article
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

scientific article
Complete genome sequence of Caulobacter crescentus

scientific article
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

scientific article published on March 14, 2013
Enteric dysbiosis associated with a mouse model of alcoholic liver disease

scientific article
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

scientific article
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

scientific article
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article
Bacterial diversity in the oral cavity of 10 healthy individuals

scientific article
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

scientific article
Structural flexibility in the Burkholderia mallei genome

scientific article
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

scientific article
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

scientific article
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

scientific article
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea

scientific article
Genomic insights into the Ixodes scapularis tick vector of Lyme disease

scientific article published on 9 February 2016
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice

scientific article
Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury.

scientific article
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)

scientific article
Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis

scientific article published on September 7, 2010
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome

scientific article
The Human Microbiome Project: a community resource for the healthy human microbiome

scientific article
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

scientific article
Diversity of 16S rRNA genes within individual prokaryotic genomes.

scientific article
Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

scientific article
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

scientific article

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