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List of works by Betz Halloran

A Bayesian Framework for Estimating Vaccine Efficacy per Infectious Contact

scientific article published on January 2008

A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes

scientific article

A Bayesian model for evaluating influenza antiviral efficacy in household studies with asymptomatic infections

scientific article

A Data-Augmentation Method for Infectious Disease Incidence Data from Close Contact Groups

scientific article

A Markov model for measuring vaccine efficacy for both susceptibility to infection and reduction in infectiousness for prophylactic HIV vaccines

scientific article published in January 1999

A Resampling-Based Test to Detect Person-To-Person Transmission of Infectious Disease

scientific article published on June 2007

A chimeric simian/human immunodeficiency virus expressing a primary patient human immunodeficiency virus type 1 isolate env causes an AIDS-like disease after in vivo passage in rhesus monkeys.

scientific article published in October 1996

A family study of lymphedema of the leg in a lymphatic filariasis-endemic area

scientific article published on 01 February 2004

A hybrid EM and Monte Carlo EM algorithm and its application to analysis of transmission of infectious diseases

scientific article

A pathway EM-algorithm for estimating vaccine efficacy with a non-monotone validation set.

scientific article

AIDS: modeling epidemic control

scientific article published on 01 March 1995

Accounting for variability in sample size estimation with applications to nonadherence and estimation of variance and effect size

scientific article published in June 2007

Aggregated mobility data could help fight COVID-19

scientific article published on 23 March 2020

Aggregating data from COVID-19 trials

scientific article published on 01 June 2020

An Assessment of Household and Individual-Level Mosquito Prevention Methods during the Chikungunya Virus Outbreak in the United States Virgin Islands, 2014-2015.

scientific article published on 5 February 2018

An acutely lethal simian immunodeficiency virus stimulates expansion of V beta 7- and V beta 14-expressing T lymphocytes

scientific article published on August 1994

Analysis of Households in Communities

Analysis of Independent Households

Antibody-dependent enhancement of severe dengue disease in humans

scientific article published on 2 November 2017

Antigenic stimulation by BCG vaccine as an in vivo driving force for SIV replication and dissemination

scientific article published on 01 April 1998

Antiviral effects on influenza viral transmission and pathogenicity: observations from household-based trials

scientific article published on 06 November 2006

Assessing Indirect, Total, and Overall Effects

article

Assessing effects of cholera vaccination in the presence of interference

scientific article

Assessing the impact of travel restrictions on international spread of the 2014 West African Ebola epidemic

scientific article published on 23 October 2014

Assessing the international spreading risk associated with the 2014 west african ebola outbreak

scientific article

Assessment of families for excess risk of lymphedema of the leg in a lymphatic filariasis-endemic area

scientific article published on 01 February 2004

Assessment of the direct effectiveness of BC meningococcal vaccine in Rio de Janeiro, Brazil: a case-control study.

scientific article

Augmented HIV vaccine trial design for estimating reduction in infectiousness and protective efficacy ⬇️

scientific article published on January 30, 1998

Bayesian estimation of vaccine efficacy

scientific article published in January 2004

Binomial and Stochastic Transmission Models

article

Case Definition and Design Sensitivity

scientific article published on January 2013

Causal Vaccine Effects on Binary Postinfection Outcomes

scientific article published on March 2006

Causal inference for vaccine effects on infectiousness

scientific article published on 6 January 2012

Causal inference in infectious diseases

scientific article published on March 1995

Changes in human immunodeficiency virus type 1 envelope glycoproteins responsible for the pathogenicity of a multiply passaged simian-human immunodeficiency virus (SHIV-HXBc2)

scientific article

Characterization of Simian-Human Immunodeficiency Virus Envelope Glycoprotein Epitopes Recognized by Neutralizing Antibodies from Infected Monkeys ⬇️

scientific article published on October 1, 1998

Characterization of molecularly cloned simian-human immunodeficiency viruses causing rapid CD4+ lymphocyte depletion in rhesus monkeys

scientific article published in June 1997

Comment on Laber et al

scientific article published on 18 July 2018

Community interventions and the epidemic prevention potential

scientific article published on 01 September 2002

Comparative effectiveness of different strategies of oral cholera vaccination in bangladesh: a modeling study

scientific article

Comparing Bounds for Vaccine Effects on Infectiousness ⬇️

scientific article published on November 1, 2012

Comparing biomarkers as trial level general surrogates

scientific article published on April 2016

Components of the indirect effect in vaccine trials: identification of contagion and infectiousness effects

scientific article

Considerations for the design of vaccine efficacy trials during public health emergencies

scientific article published on 14 February 2018

Containing Ebola at the Source with Ring Vaccination

scientific article

Containing a large bioterrorist smallpox attack: a computer simulation approach.

scientific article published on 8 August 2006

Containing bioterrorist smallpox

scientific article published in November 2002

Containing pandemic influenza at the source.

scientific article

Containing pandemic influenza with antiviral agents.

scientific article

Controlling dengue with vaccines in Thailand

scientific article

Cost-effectiveness of a routine varicella vaccination program for US children

scientific article

Cost-effectiveness of live-attenuated influenza vaccination among school-age children

scientific article published on 04 December 2020

Creating a Framework for Conducting Randomized Clinical Trials during Disease Outbreaks

scientific article published on 01 April 2020

DESIGN OF VACCINE TRIALS DURING OUTBREAKS WITH AND WITHOUT A DELAYED VACCINATION COMPARATOR.

scientific article published on 9 March 2018

Dengue and Zika virus infections in children elicit cross-reactive protective and enhancing antibodies that persist long term

scientific article published in 2021

Dengue seroprevalence in a cohort of schoolchildren and their siblings in Yucatan, Mexico (2015-2016)

scientific article published on 21 November 2018

Dependency of Vaccine Efficacy on Pre-Exposure and Age: A Closer Look at a Tetravalent Dengue Vaccine

scientific article published on 24 August 2017

Dependent Happenings: A Recent Methodological Review

scientific article

Design and Analysis of Vaccine Studies

article

Design and Evaluation of Prophylactic Interventions Using Infectious Disease Incidence Data from Close Contact Groups ⬇️

scientific article published on May 1, 2006

Design and interpretation of vaccine field studies.

scientific article

Design of vaccine efficacy trials during public health emergencies

scientific article published on 01 July 2019

Designing a Study of Correlates of Risk for Ebola Vaccination

scientific article published on 23 January 2020

Designing effective control of dengue with combined interventions

scientific article published on 23 January 2020

Detecting human-to-human transmission of avian influenza A (H5N1).

scientific article

Direct and indirect effects in vaccine efficacy and effectiveness

scientific article published on February 1991

Direct and indirect effects of vaccines: an annotation on the estimation of the vaccine efficacy from outbreaks caused by acute infection agents such as measles

scientific article published in July 1990

Direct and total effectiveness of the intranasal, live-attenuated, trivalent cold-adapted influenza virus vaccine against the 2000-2001 influenza A(H1N1) and B epidemic in healthy children

scientific article published on January 2004

Disseminated Effects in Agent Based Models: A Potential Outcomes Framework and Application to Inform Pre-Exposure Prophylaxis Coverage Levels for HIV Prevention

scientific article published on 31 October 2020

ESTIMATING WITHIN-HOUSEHOLD CONTACT NETWORKS FROM EGOCENTRIC DATA.

scientific article

ESTIMATING WITHIN-SCHOOL CONTACT NETWORKS TO UNDERSTAND INFLUENZA TRANSMISSION.

scientific article

Ebola: mobility data

scientific article

Economic evaluation of influenza pandemic mitigation strategies in the United States using a stochastic microsimulation transmission model.

scientific article

Effectiveness of a live oral human rotavirus vaccine after programmatic introduction in Bangladesh: A cluster-randomized trial

scientific article

Effectiveness of seasonal influenza vaccination of children in Senegal during a year of vaccine mismatch: a cluster-randomized trial

scientific article published on 01 October 2019

Effects of infection history on dengue virus infection and pathogenicity

Effects of pertussis vaccination on transmission: vaccine efficacy for infectiousness ⬇️

scientific article published on May 16, 2003

Efficacy of a bivalent killed whole-cell cholera vaccine over five years: a re-analysis of a cluster-randomized trial

scientific article published on 20 February 2018

Efficacy of trivalent, cold-adapted, influenza virus vaccine against influenza A (Fujian), a drift variant, during 2003-2004

scientific article

Efficiency of estimating vaccine efficacy for susceptibility and infectiousness: randomization by individual versus household

scientific article published on 01 September 1999

Emerging, evolving, and established infectious diseases and interventions

scientific article published on September 2014

Empirical Bayes methods for stabilizing incidence rates before mapping.

scientific article published on November 1994

Ensemble forecast modeling for the design of COVID-19 vaccine efficacy trials

scientific article published on 15 September 2020

Epidemiological and clinical features of the 2019 novel coronavirus outbreak in China

scientific article

Epidemiological benefits of more-effective tuberculosis vaccines, drugs, and diagnostics

scholarly article

Epidemiology of dengue and other arboviruses in a cohort of school children and their families in Yucatan, Mexico: Baseline and first year follow-up

scientific article published on 21 November 2018

Estimability and Interpretation of Vaccine Efficacy Using Frailty Mixing Models

article

Estimands and inference in cluster-randomized vaccine trials

scientific article published on 05 May 2020

Estimates of inactivated influenza vaccine effectiveness among children in Senegal: results from two consecutive cluster-randomized controlled trials in 2010 and 2011

scientific article published on 09 November 2020

Estimating Vaccine Efficacy From Secondary Attack Rates

article

Estimating efficacy of trivalent, cold-adapted, influenza virus vaccine (CAIV-T) against influenza A (H1N1) and B using surveillance cultures

scientific article published in August 2003

Estimating heterogeneous transmission with multiple infectives using MCMC methods

scientific article

Estimating influenza vaccine efficacy from challenge and community-based study data

scientific article

Estimating population effects of vaccination using large, routinely collected data

scientific article

Estimating strain-specific and overall efficacy of polyvalent vaccines against recurrent pathogens from a cross-sectional study

scientific article published on 4 February 2013

Estimating the cost of illness and burden of disease associated with the 2014-2015 chikungunya outbreak in the U.S. Virgin Islands

scientific article published on 19 July 2019

Estimating the establishment of local transmission and the cryptic phase of the COVID-19 pandemic in the USA

scientific article published on 07 July 2020

Estimating vaccine efficacy using auxiliary outcome data and a small validation sample

scientific article

Estimation of Vaccine Efficacy in the Presence of Waning: Application to Cholera Vaccines ⬇️

scientific article published on May 15, 1998

Estimation of the efficacy of live, attenuated influenza vaccine from a two-year, multi-center vaccine trial: implications for influenza epidemic control

scientific article published on 01 March 2000

Estimation of vaccine efficacy from epidemics of acute infectious agents under vaccine-related heterogeneity

scientific article published in September 1993

Estimation of vaccine efficacy in outbreaks of acute infectious diseases

scientific article

Evaluating Protective Effects of Vaccination

scholarly article published 26 September 2009

Evaluating the Effectiveness of Vaccines Using a Regression Discontinuity Design.

scientific article published in June 2019

Evaluation and comparison of predictive individual-level general surrogates

scientific article published on September 2017

Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study

scientific article published on 02 April 2020

Evolving epidemiology of novel coronavirus diseases 2019 and possible interruption of local transmission outside Hubei Province in China: a descriptive and modeling study

scientific article (preprint)

Exposure efficacy and change in contact rates in evaluating prophylactic HIV vaccines in the field

scientific article

Extrapolating theoretical efficacy of inactivated influenza A/H5N1 virus vaccine from human immunogenicity studies

scientific article

Finding optimal vaccination strategies for pandemic influenza using genetic algorithms.

scientific article

FluTE, a publicly available stochastic influenza epidemic simulation model

scientific article

Forecasting the effectiveness of indoor residual spraying for reducing dengue burden

Further Evaluation of Protective Effects

article published in 2009

Genome sequencing reveals Zika virus diversity and spread in the Americas

scientific article (publication date: 18 February 2017)

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

article

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia. ⬇️

scientific article published on 12 November 2019

HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection

scientific article published on 22 July 2013

Household Transmission of SARS-CoV-2: A Systematic Review and Meta-analysis

scientific article published on 01 December 2020

Household Transmission of Vibrio cholerae in Bangladesh

scientific article

Household transmissibility of avian influenza A (H7N9) virus, China, February to May 2013 and October 2013 to March 2014.

scientific article published on 12 March 2015

Household transmission of SARS-CoV-2: a systematic review and meta-analysis of secondary attack rate

scientific article published on 31 July 2020

Household-Based Studies

Immunology and Early Phase Trials

scholarly article published 26 September 2009

Impact of Rotavirus Vaccine Introduction in Children Less Than 2 Years of Age Presenting for Medical Care With Diarrhea in Rural Matlab, Bangladesh

scientific article published on 01 November 2019

Incorporating real-time influenza detection into the test-negative design for estimating influenza vaccine effectiveness: The real-time test-negative design (rtTND)

scientific article published on 25 September 2020

Inferring high-resolution human mixing patterns for disease modeling

Interference and Sensitivity Analysis ⬇️

scientific article

Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks.

scientific article published on 26 June 2018

Interpretation and estimation of vaccine efficacy under heterogeneity ⬇️

scientific article published on August 1, 1992

Introduction and Examples

Invited commentary: Challenges of using contact data to understand acute respiratory disease transmission

scientific article

Invited commentary: Evaluating vaccination programs using genetic sequence data

scientific article

Malaria vaccines: lessons from field trials.

scientific article published in January 1994

Measures of the effects of vaccination in a randomly mixing population

scientific article published on 01 March 1991

Measuring vaccine efficacy for both susceptibility to infection and reduction in infectiousness for prophylactic HIV-1 vaccines

scientific article published on 01 December 1996

Measuring vaccine efficacy from epidemics of acute infectious agents

scientific article

Meningococcal carriage within households in the African meningitis belt: A longitudinal pilot study

scientific article published on 29 November 2017

Methods for identifying Neisseria meningitidis carriers: a multi-center study in the African meningitis belt

scientific article

Model-based estimation of vaccine effects from community vaccine trials

scientific article

Modeling Competing Infectious Pathogens from a Bayesian Perspective: Application to Influenza Studies with Incomplete Laboratory Results.

scientific article

Modeling malaria vaccines. I: New uses for old ideas

scientific article published in May 1989

Modeling malaria vaccines. II: Population effects of stage-specific malaria vaccines dependent on natural boosting

scientific article published in May 1989

Modeling targeted layered containment of an influenza pandemic in the United States.

scientific article

Modeling the impact of social distancing, testing, contact tracing and household quarantine on second-wave scenarios of the COVID-19 epidemic

scientific article published on 18 May 2020

Modeling transmission dynamics of stage-specific malaria vaccines.

scientific article published in March 1992

Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19

scientific article published on 05 August 2020

Modes of Action and Time-Varying VE S

Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees ⬇️

scientific article

Multigroup, Adaptively Randomized Trials Are Advantageous for Comparing Coronavirus Disease 2019 (COVID-19) Interventions

scientific article published on 11 June 2020

Mycobacterium tuberculosis: just desserts for an ungrateful guest ⬇️

scientific article published on 01 February 1994

Networks of face-to-face social contacts in Niakhar, Senegal

scientific article published on 06 August 2019

On estimation of vaccine efficacy using validation samples with selection bias

scientific article published on 23 March 2006

On individual and population effectiveness of vaccination

scientific article published on 01 December 1995

On influenza and school closings: time for prospective studies

scientific article published on November 2009

On the distribution of vaccine protection under heterogeneous response.

scientific article

One versus two doses: What is the best use of vaccine in an influenza pandemic?

scientific article

Opinion: Mathematical models: a key tool for outbreak response

scientific article

Optimal vaccine allocation for the early mitigation of pandemic influenza

scientific article

Optimal vaccine trial design when estimating vaccine efficacy for susceptibility and infectiousness from multiple populations ⬇️

scientific article published on May 30, 1998

Optimizing and evaluating biomarker combinations as trial-level general surrogates

scientific article published on 10 October 2018

Overview of Vaccine Effects and Study Designs

PREDICTIVE MODELING OF CHOLERA OUTBREAKS IN BANGLADESH.

scientific article published on June 2016

Performance of rapid influenza H1N1 diagnostic tests: a meta-analysis

scientific article

Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease

scientific article published in PLoS ONE

Persistence, drugs and rock'n'roll

scientific article published on 01 July 1992

Persistent Arthralgia Associated with Chikungunya Virus Outbreak, US Virgin Islands, December 2014-February 2016.

scientific article published on April 2017

Persistent infection of macaques with simian-human immunodeficiency viruses

scientific article (publication date: November 1995)

Planning for the control of pandemic influenza A (H1N1) in Los Angeles County and the United States

scientific article

Population-wide benefits of routine vaccination of children against influenza

scientific article published in January 2005

Prior infection with a nonpathogenic chimeric simian-human immunodeficiency virus does not efficiently protect macaques against challenge with simian immunodeficiency virus

scientific article published on July 1995

Projected Impact of Dengue Vaccination in Yucatán, Mexico

scientific article

Projected spread of Zika virus in the Americas

scientific article

Public health. Community studies for vaccinating schoolchildren against influenza

scientific article

Quantifying the risk of local Zika virus transmission in the contiguous US during the 2015-2016 ZIKV epidemic

article

R 0 and Deterministic Models

Randomization and Baseline Transmission

article

Randomization and baseline transmission in vaccine field trials

article

Real-Time Assessment of the International Spreading Risk Associated with the 2014 West African Ebola Outbreak

Reply to Aguiar and Stollenwerk.

scientific article published in February 2018

Reply to Lindsey, Höschler and de Silva

scientific article published on 14 August 2019

Reply to Vani et al.: Tuberculosis models and complexity

article published in the Proceedings of the National Academy of Sciences of the United States of America

Rotavirus vaccine effectiveness in low-income settings: An evaluation of the test-negative design

scientific article

Safety of cold-adapted live influenza vaccine

scientific article published on 01 June 2004

Salmonella enteritidis infections in France and the United States: causes vs causal models

scientific article published on 01 December 1993

School opening dates predict pandemic influenza A(H1N1) outbreaks in the United States

scientific article

School-located influenza vaccination reduces community risk for influenza and influenza-like illness emergency care visits

scientific article

Semi-parametric models for mismeasured exposure information in vaccine trials

scientific article

Semiparametric methods for multiple exposure mismeasurement and a bivariate outcome in HIV vaccine trials.

scientific article published in March 1999

Seroprevalence of Dengue Antibodies in Three Urban Settings in Yucatan, Mexico

scientific article published on 19 February 2018

Seven challenges for model-driven data collection in experimental and observational studies.

scientific article

Simulations for Designing and Interpreting Intervention Trials in Infectious Diseases

Simulations for designing and interpreting intervention trials in infectious diseases

scientific article published on 29 December 2017

Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico

scientific article published on 15 March 2018

Spatiotemporal dynamics of the Ebola epidemic in Guinea and implications for vaccination and disease elimination: a computational modeling analysis

scientific article

Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis

scientific article published on 7 January 2015

Spread of Zika virus in the Americas

scientific article (publication date: 25 April 2017)

Stabilization of the antigenicity of coxsackie B procapsids by disoxaril

scientific article published on 01 December 1993

Strategies for pandemic and seasonal influenza vaccination of schoolchildren in the United States.

scientific article

Strategy for distribution of influenza vaccine to high-risk groups and children.

scientific article

Study Designs for Evaluating Different Efficacy and Effectiveness Aspects of Vaccines ⬇️

scientific article published on November 15, 1997

Study designs for dependent happenings

Subtype-specific transmission probabilities for human immunodeficiency virus type 1 among injecting drug users in Bangkok, Thailand

scientific article

Successes and Failures of the Live-attenuated Influenza Vaccine: Can We Do Better?

scientific article published on 01 March 2020

Surrogates of Protection

T cell receptor V beta repertoire in an acute infection of rhesus monkeys with simian immunodeficiency viruses and a chimeric simian-human immunodeficiency virus

scientific article

Temporal Confounding in the Test Negative Design

scientific article published on 16 May 2020

Testing for contributions of mitochondrial DNA mutations to complex diseases

scientific article published in 1998

The Envelope Glycoprotein Ectodomains Determine the Efficiency of CD4+ T Lymphocyte Depletion in Simian– Human Immunodeficiency Virus–Infected Macaques ⬇️

scientific article published on September 21, 1998

The First Reported Outbreak of Chikungunya in the U.S. Virgin Islands, 2014-2015

scientific article (publication date: 5 October 2016)

The Minicommunity Design to Assess Indirect Effects of Vaccination

scientific article published on August 2012

The TIRS trial: protocol for a cluster randomized controlled trial assessing the efficacy of preventive targeted indoor residual spraying to reduce Aedes-borne viral illnesses in Merida, Mexico

scientific article published on 08 October 2020

The behaviour of common measures of association used to assess a vaccination programme under complex disease transmission patterns--a computer simulation study of malaria vaccines.

scientific article published in March 1990

The case for a typhoid vaccine probe study and overview of design elements

scientific article

The contribution of neighbours to an individual's risk of typhoid outcome

scientific article

The dengue vaccine pipeline: Implications for the future of dengue control

scientific article

The effect of age on transmission of 2009 pandemic influenza A (H1N1) in a camp and associated households

scientific article

The effect of disease prior to an outbreak on estimates of vaccine efficacy following the outbreak

scientific article published in May 1995

The effect of travel restrictions on the spread of the 2019 novel coronavirus (2019-nCoV) outbreak

scientific article published on 11 February 2020

The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak

scientific article

The effects of vector movement and distribution in a mathematical model of dengue transmission

scientific article

The epidemiology and transmissibility of Zika virus in Girardot and San Andres island, Colombia, September 2015 to January 2016

scientific article

The global transmission and control of influenza

scientific article

The transmissibility and control of pandemic influenza A (H1N1) virus.

scientific article

Toward Causal Inference With Interference

scientific article published on June 2008

Transmissibility and Pathogenicity of Ebola Virus: A Systematic Review and Meta-analysis of Household Secondary Attack Rate and Asymptomatic Infection

scientific article

Transmissibility of Norovirus in Urban Versus Rural Households in a Large Community Outbreak in China

scientific article published on 01 September 2018

Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone

scientific article published on 28 March 2016

Using validation sets for outcomes and exposure to infection in vaccine field studies.

scientific article published in September 2001

Vaccination strategies for epidemic cholera in Haiti with implications for the developing world

scientific article

Vaccine Effects on Post-Infection Outcomes

Vaccine testing. Ebola and beyond

scientific article

Validity of university students' self-reported vaccination status after a meningococcal B outbreak

scientific article published on 16 July 2020

Zika virus evolution and spread in the Americas

scientific article

Zika virus infection enhances future risk of severe dengue disease

scientific article

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