List of works - Rob Knight

QIIME allows analysis of high-throughput community sequencing data

scientific article

UCHIME improves sensitivity and speed of chimera detection

scientific article (publication date: 15 August 2011)

Structure, function and diversity of the healthy human microbiome

scientific article

UniFrac: a new phylogenetic method for comparing microbial communities

scientific article

A core gut microbiome in obese and lean twins

scientific article

Human gut microbiome viewed across age and geography

scientific article

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

scientific article (publication date: August 2012)

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

scientific article published on 3 June 2010

Linking long-term dietary patterns with gut microbial enterotypes

scientific article

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

scientific article (publication date: September 2013)

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

scientific article (publication date: March 2012)

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

scientific article (publication date: 9 August 2016)

The human microbiome project

scientific article (publication date: 18 October 2007)

PyNAST: a flexible tool for aligning sequences to a template alignment

scientific article (publication date: 15 January 2010)

Diversity, stability and resilience of the human gut microbiota

scientific article

Bacterial community variation in human body habitats across space and time

scientific article (publication date: 18 December 2009)

Evolution of mammals and their gut microbes

scientific article (publication date: 20 June 2008)

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Gut microbiota from twins discordant for obesity modulate metabolism in mice

scientific article (publication date: 6 September 2013)

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

scientific article (publication date: March 2011)

A framework for human microbiome research

scientific article

The Impact of the Gut Microbiota on Human Health: An Integrative View

scientific article (publication date: 16 March 2012)

The treatment-naive microbiome in new-onset Crohn's disease

scientific article

Succession of microbial consortia in the developing infant gut microbiome

scientific article

Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

scientific article (publication date: 9 April 2010)

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

scientific article (publication date: 7 August 2006)

Human genetics shape the gut microbiome.

scientific article

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

scientific article

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

scientific article published on 10 February 2008

UniFrac: an effective distance metric for microbial community comparison

scientific article

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

scientific article (publication date: 20 May 2011)

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

scientific article

Soil bacterial and fungal communities across a pH gradient in an arable soil

scientific article published on 6 May 2010

High-fat diet determines the composition of the murine gut microbiome independently of obesity

scientific article published on 23 August 2009

Worlds within worlds: evolution of the vertebrate gut microbiota

scientific article (publication date: October 2008)

The long-term stability of the human gut microbiota

scientific article

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

scientific article

Global patterns in bacterial diversity

scientific article published on 25 June 2007

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

scientific article published on 30 January 2013

Host remodeling of the gut microbiome and metabolic changes during pregnancy

scientific article

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

scholarly article

Moving pictures of the human microbiome

scientific article published in 2011

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

scientific article

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease

scientific article

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

2012 scientific article

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

scientific article

Human oral, gut, and plaque microbiota in patients with atherosclerosis

scientific article

Short pyrosequencing reads suffice for accurate microbial community analysis

scientific article published on 18 September 2007

Examining the global distribution of dominant archaeal populations in soil

scientific article published on 18 November 2010

EMPeror: a tool for visualizing high-throughput microbial community data

scientific article

List of works by Rob Knight

QIIME allows analysis of high-throughput community sequencing data

UCHIME improves sensitivity and speed of chimera detection

Structure, function and diversity of the healthy human microbiome

UniFrac: a new phylogenetic method for comparing microbial communities

A core gut microbiome in obese and lean twins

Human gut microbiome viewed across age and geography

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

Linking long-term dietary patterns with gut microbial enterotypes

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

The human microbiome project

PyNAST: a flexible tool for aligning sequences to a template alignment

Diversity, stability and resilience of the human gut microbiota

Bacterial community variation in human body habitats across space and time

Evolution of mammals and their gut microbes

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Gut microbiota from twins discordant for obesity modulate metabolism in mice

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

A framework for human microbiome research

The Impact of the Gut Microbiota on Human Health: An Integrative View

The treatment-naive microbiome in new-onset Crohn's disease

Succession of microbial consortia in the developing infant gut microbiome

Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

Human genetics shape the gut microbiome.

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

UniFrac: an effective distance metric for microbial community comparison

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

Soil bacterial and fungal communities across a pH gradient in an arable soil

High-fat diet determines the composition of the murine gut microbiome independently of obesity

Worlds within worlds: evolution of the vertebrate gut microbiota

The long-term stability of the human gut microbiota

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

Global patterns in bacterial diversity

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

Host remodeling of the gut microbiome and metabolic changes during pregnancy

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

Moving pictures of the human microbiome

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

Human oral, gut, and plaque microbiota in patients with atherosclerosis

Short pyrosequencing reads suffice for accurate microbial community analysis

Examining the global distribution of dominant archaeal populations in soil

EMPeror: a tool for visualizing high-throughput microbial community data