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List of works by Andrew Fire

A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference

scientific article (publication date: December 2009)

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

scientific article

A modular set of lacZ fusion vectors for studying gene expression in Caenorhabditis elegans

scientific article published in September 1990

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

scientific article

Aberrant B cell repertoire selection associated with HIV neutralizing antibody breadth

scientific article published on 20 January 2020

An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes

scientific article published on 06 May 2020

An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo

scientific article

Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning ⬇️

scientific article published on August 15, 1998

Caenorhabditis elegansLevamisole Resistance Geneslev-1,unc-29, andunc-38Encode Functional Nicotinic Acetylcholine Receptor Subunits ⬇️

scientific article published on August 1, 1997

Capped small RNAs and MOV10 in human hepatitis delta virus replication

scientific article

CeMyoD accumulation defines the body wall muscle cell fate during C. elegans embryogenesis

scientific article published on November 1990

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

scientific article

Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications

scientific article

Conserved translatome remodeling in nematode species executing a shared developmental transition

scientific article

Context-dependent DNA polymerization effects can masquerade as DNA modification signals

scientific article published on 31 March 2022

Convergent antibody signatures in human dengue

scientific article

Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems

scientific article published on 4 April 2018

DNA transformation

scientific article (publication date: 1995)

Determinants of nucleosome organization in primary human cells

scientific article

Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein

scientific article

Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma.

scientific article

Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans

scientific article

Double-stranded RNA as a mediator in sequence-specific genetic silencing and co-suppression

scientific article published in July 1998

Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome

scientific article published on 20 July 2020

EGO-1, a C. elegans RdRP, Modulates Gene Expression via Production of mRNA-Templated Short Antisense RNAs ⬇️

scientific article published on March 22, 2011

Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference

scientific article published in November 2000

Gene silencing by double-stranded RNA (Nobel Lecture).

scientific article

Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing

scientific article (publication date: 13 July 2001)

High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment

scientific article

Histochemical techniques for locating Escherichia coli beta-galactosidase activity in transgenic organisms

scientific article published in October 1992

Human leukocyte antigen I knockdown human embryonic stem cells induce host ignorance and achieve prolonged xenogeneic survival

scientific article published in September 2011

Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements

scientific article

Human tRNA-derived small RNAs in the global regulation of RNA silencing

scientific article

Identification of a Pangolin Niche for a 2019-nCoV-like Coronavirus via an Extensive Meta-metagenomic Search

scientific article published on 15 February 2020

In vitro transcription of adenovirus ⬇️

scientific article published on December 1, 1981

In vitro transcription: whole-cell extract

scientific article published in January 1983

Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans

scientific article (publication date: 24 January 2001)

Inhibition of transcription factor activity by poliovirus

scientific article

Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens.

scientific article published on 11 August 2017

Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi

scientific article published in August 2002

Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody

scientific article

Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

scientific article

Minicircle DNA Vectors Achieve Sustained Expression Reflected by Active Chromatin and Transcriptional Level ⬇️

scientific article published on November 27, 2012

Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome

scientific article

Nonsense mRNA suppression via nonstop decay

scientific article published on 8 January 2018

Nucleic acid structure and intracellular immunity: some recent ideas from the world of RNAi

scientific article published in November 2005

On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires

scientific article

On the nature of in vivo requirements forrde-4in RNAi and developmental pathways inC. elegans ⬇️

scientific article published on May 1, 2011

On the role of RNA amplification in dsRNA-triggered gene silencing

scientific article (publication date: 16 November 2001)

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning

scientific article

Patterns of known and novel small RNAs in human cervical cancer

scientific article (publication date: July 2007)

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

scientific article (publication date: 19 February 1998)

Prospective Biopsy-Based Study of CKD of Unknown Etiology in Sri Lanka

scientific article published on 18 January 2019

Protection from Feed-Forward Amplification in an Amplified RNAi Mechanism ⬇️

scientific article published on November 9, 2012

RNA-triggered gene silencing

scientific article

Recompleting the Caenorhabditis elegans genome

scientific article published on 23 May 2019

Six RNA Viruses and Forty-One Hosts: Viral Small RNAs and Modulation of Small RNA Repertoires in Vertebrate and Invertebrate Systems

scientific article (publication date: 12 February 2010)

Specific interference by ingested dsRNA

scientific article (publication date: 29 October 1998)

Structural analysis of hyperperiodic DNA from Caenorhabditis elegans

scientific article published on 31 May 2006

Target-dependent nickase activities of the CRISPR-Cas nucleases Cpf1 and Cas9

scientific article published on 04 March 2019

The Extragenic Spacer Length Between the 5′ and 3′ Ends of the Transgene Expression Cassette Affects Transgene Silencing From Plasmid-based Vectors ⬇️

scientific article published on May 8, 2012

The T-box factor MLS-1 acts as a molecular switch during specification of nonstriated muscle in C. elegans

scientific article

The rde-1 gene, RNA interference, and transposon silencing in C. elegans

scientific article (publication date: 15 October 1999)

Transcription polymerase-catalyzed emergence of novel RNA replicons

scientific article

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

scientific article

Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls

scientific article

Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity

scientific article

Up-regulated Dicer expression in patients with cutaneous melanoma

scientific article

Viroid-like colonists of human microbiomes ⬇️

preprint published in January 2024

Viroid-like colonists of human microbiomes ⬇️

2024 paper published in Cell

dsRNA-mediated gene silencing in cultured Drosophila cells: a tissue culture model for the analysis of RNA interference

scientific article published in July 2000

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