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List of works by Niklaus Grunwald

<i>Phytophthora</i> Species Differ in Response to Phosphorous Acid and Mefenoxam for the Management of Phytophthora Root Rot in Rhododendron

scientific article published on 18 December 2020

A New Oomycete Metabarcoding Method Using the <i>rps10</i> Gene

scientific article published in 2022

A Systems Approach for Management of Pests and Pathogens of Nursery Crops

scientific article published on 01 September 2012

An ephemeral sexual population of Phytophthora infestans in the Northeastern United States and Canada

scientific article published on 31 December 2014

Analysis of genotypic diversity data for populations of microorganisms

scientific article

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

scientific article

Best Practices for Population Genetic Analyses.

scientific article published on 17 May 2017

CHAPTER 20: Analysis of Population Genetic Data

Clonal expansion of the Belgian Phytophthora ramorum populations based on new microsatellite markers

scientific article published on 30 November 2009

Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management

scientific article published on 13 March 2018

Cultural Methods and Soil Nutrient Status in Low and High Input Agricultural Systems, as They Affect Rhizoctonia Species

Developing educational resources for population genetics in R: an open and collaborative approach

scientific article

Development and Validation of Polymorphic Microsatellite Loci for the NA2 Lineage of Phytophthora ramorum from Whole Genome Sequence Data

article

Development of a diagnostic assay for race differentiation of Podosphaera macularis

scientific article published on 11 September 2020

Development of codominant simple sequence repeat, single nucleotide polymorphism and sequence characterized amplified region markers for the pea root rot pathogen, Aphanomyces euteiches

article

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

scientific article

Diversity of Foliar Phytophthora Species on Rhododendron in Oregon Nurseries

scientific article published on 11 August 2015

Dynamics of bacterial populations in relation to carbon availability in a residue-amended soil

article

Emergence of the sudden oak death pathogen Phytophthora ramorum

scientific article

Environment and Slow Epidemics Favor Oosporulation of Phytophthora infestans Mont. De Bary, on Potato Leaves in the Toluca Valley, México

article by Gaspar Romero-Montes et al published 8 March 2008 in American Journal of Potato Research

Evidence for multiple introductions and clonality in Spanish populations of Fusarium circinatum

scientific article

Evolution and population genetics of exotic and re-emerging pathogens: novel tools and approaches

scientific article

Evolution of RXLR-class effectors in the oomycete plant pathogen Phytophthora ramorum

scientific article

Evolution of an Experimental Population of Phytophthora capsici in the Field

scientific article published on 01 October 2014

Evolution of the U.S. Biological Select Agent Rathayibacter toxicus

scientific article published on 28 August 2018

Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management.

scientific article published on 12 December 2017

First Report of Camphor Tree (Cinnamomum camphora) as a Host of Phytophthora ramorum

scientific article published on 01 October 2013

First Report of Phytophthora ramorum Lineage EU1 Infecting Douglas Fir and Grand Fir in Oregon

First Report of the EU1 Clonal Lineage of Phytophthora ramorum on Tanoak in an Oregon Forest

First Report ofPhytophthora occultansCausing Root and Collar Rot onCeanothus, Boxwood, Rhododendron, and Other Hosts in Horticultural Nurseries in Oregon, USA

Five Reasons to Consider Phytophthora infestans a Reemerging Pathogen

scientific article

Fungal Planet description sheets: 154-213 ⬇️

scientific article

Fungicide Sensitivity of U.S. Genotypes of Phytophthora infestans to Six Oomycete-Targeted Compounds

article

Genetic Analysis of Phytophthora nicotianae Populations from Different Hosts Using Microsatellite Markers

scientific article published on 25 April 2016

Genetic Differentiation and Clonal Expansion of Chinese Botrytis cinerea Populations from Tomato and Other Crops in China

scientific article published on 09 December 2019

Genetic Diversity of Verticillium dahliae Isolates From Mint Detected with Genotyping by Sequencing

scientific article published on 30 September 2019

Genetic and pathogenic relatedness of Pseudoperonospora cubensis and P. humuli

scientific article published in July 2011

Genetic diversity of Phytophthora infestans in the Northern Andean region

scientific article

Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen

scientific article

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome sequences ofPhytophthoraenable translational plant disease management and accelerate research

article

Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans

scientific article published on 23 June 2020

Genome-wide increased copy number is associated with emergence of super-fit clones of the Irish potato famine pathogen Phytophthora infestans

scholarly article published 16 May 2019

Genomic Analyses of Dominant U.S. Clonal Lineages of Phytophthora infestans Reveals a Shared Common Ancestry for Clonal Lineages US11 and US18 and a Lack of Recently Shared Ancestry Among All Other U.S. Lineages

scientific article

Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen

scientific article published on 19 May 2022

Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

scientific article published on 03 September 2019

Growth, infection and aggressiveness of Phytophthora pathogens on Rhododendron leaves

scientific article published in 2021

Hierarchical Analysis of Diversity, Selfing, and Genetic Differentiation in Populations of the Oomycete Aphanomyces euteiches

article

High levels of diversity and population structure in the potato late blight pathogen at the Mexico centre of origin.

scientific article

High-Quality, Phased Genomes of <i>Phytophthora ramorum</i> Clonal Lineages NA1 and EU1

scientific article published in 2022

Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

scientific article

Identification of QTL controlling high levels of partial resistance toFusarium solanif. sp.pisiin pea

Identification of new polymorphic microsatellite markers in the NA1 and NA2 lineages of Phytophthora ramorum

scientific article

Inferring Variation in Copy Number Using High Throughput Sequencing Data in R.

scientific article published on 13 April 2018

Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

scientific article published in PLoS ONE

Late blight resistance of five mexican potato cultivars in the eastern sierra of the state of méxico

article by Mateo Armando Cadena-Hinojosa et al published September 2007 in American Journal of Potato Research

Launching CABI Agriculture and Bioscience: ensuring that today’s research meets tomorrow’s global challenges in agriculture and the environment

scientific article published in 2020

Lineage, Temperature, and Host Species have Interacting Effects on Lesion Development in Phytophthora ramorum

article

Loop-mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans.

scientific article published on 28 January 2016

Marker stability throughout 400 days of in vitro hyphal growth in the filamentous ascomycete, Sclerotinia sclerotiorum

scientific article published on October 2007

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

scientific article

Microbe-ID: An open source toolbox for microbial genotyping and species identification

Microbial suppression of in vitro growth of Pythium ultimum and disease incidence in relation to soil C and N availability

article published in 1997

Migration patterns of the emerging plant pathogen Phytophthora ramorum on the West Coast of the United States of America

scientific article published in June 2009

Molecular phylogenomics and population structure of Phytophthora pluvialis

scientific article published on 13 October 2020

New Populations of Sclerotinia sclerotiorum from Lettuce in California and Peas and Lentils in Washington

scientific article published on April 2007

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

scientific article published on 10 June 2015

Novel insights into the emergence of pathogens: the case of chestnut blight ⬇️

scientific article published on August 1, 2012

Novel introductions and epidemic dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon forests

scientific article published on 06 October 2020

Open Access and Reproducibility in Plant Pathology Research: Guidelines and Best Practices

scientific article published in May 2024

Pathogenicity, Fungicide Resistance, and Genetic Variability of Phytophthora rubi Isolates from Raspberry (Rubus idaeus) in the Western United States

scientific article published on 01 December 2014

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 December 2009-31 January 2010.

scientific article published on 23 March 2010

Phylogeographic approaches to characterize the emergence of plant pathogens

scientific article published on 06 October 2020

Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora

scientific article published on 01 June 2008

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

scientific article

Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management

scientific article published in October 2014

Phytophthora database 2.0: update and future direction

scientific article published in December 2013

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs

scientific article (publication date: 2013)

Phytophthora ipomoeae sp. nov., a new homothallic species causing leaf blight on Ipomoea longipedunculata in the Toluca Valley of central Mexico

article

Phytophthora ramorum

Phytophthora ramorum in Canada: evidence for migration within North America and from Europe

scientific article published in January 2011

Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals.

scientific article

Phytophthora-ID.org: A Sequence-Based Phytophthora Identification Tool

scientific article published on 01 March 2011

Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology

scientific article published on September 2006

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

scientific article

Population Diversity and Structure of Podosphaera macularis in the Pacific Northwestern United States and Other Populations

scientific article published on 06 April 2020

Population Genetic Structure and Cryptic Species of Plasmopara viticola in Australia

scientific article published on 17 September 2019

Population Genomics of Fungal and Oomycete Pathogens

scientific article published on 8 June 2016

Population Structure of Phytophthora infestans in the Toluca Valley Region of Central Mexico

scientific article

Population Structure of Phytophthora plurivora on Rhododendron in Oregon Nurseries

scientific article published on 29 May 2019

Population Structure of Pythium irregulare, P. ultimum, and P. sylvaticum in Forest Nursery Soils of Oregon and Washington.

scientific article published in May 2015

Population dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon from 2001 to 2004.

scientific article published in July 2007

Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries

scientific article

Population history and pathways of spread of the plant pathogen Phytophthora plurivora ⬇️

scientific article published on 10 January 2014

Population structure, races, and host range of Aphanomyces euteiches from alfalfa production fields in the central USA

Populations of Phytophthora rubi show little differentiation and high rates of migration among states in the Western United States

scientific article published on 16 February 2018

Potato Late Blight Management in the Toluca Valley: Field Validation of SimCast Modified for Cultivars with High Field Resistance

article

Potato Late-Blight Management in the Toluca Valley: Forecasts and Resistant Cultivars

article

Potato cultivars from the mexican national program: sources and durability of resistance against late blight

scientific article

Potential Application of TRAP (Targeted Region Amplified Polymorphism) Markers for Mapping and Tagging Disease Resistance Traits in Common Bean

Promoting international collaboration for potato late blight disease management

article

Qualification of a Plant Disease Simulation Model: Performance of the LATEBLIGHT Model Across a Broad Range of Environments

scientific article published in December 2005

Quantitative resistance to late blight from Solanum berthaultii cosegregates with R(Pi-ber): insights in stability through isolates and environment

scientific article published on 6 August 2010

Real-time PCR assay to distinguishPhytophthora ramorumlineages using the cellulose binding elicitor lectin (CBEL) locus

Registration of W6 26740, W6 26743, and W6 26745 Green Pea Germplasm Resistant to Fusarium Root Rot

Release of Pea Germplasm with Resistance Combined with Desirable Yield and Anti-Lodging Traits

Response to comments on "Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management".

scientific article published on 8 May 2018

SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis

scientific article published on 10 March 2016

Screening techniques and sources of resistance to root diseases in cool season food legumes

Selection for Fungicide Resistance Within a Growing Season in Field Populations of Phytophthora infestans at the Center of Origin

scientific article

Sensitivity ofPythium irregulare, P. sylvaticum, andP. ultimumfrom Forest Nurseries to Mefenoxam and Fosetyl-Al, and Control of Pythium Damping-off

scientific article published on 01 July 2014

Soilborne Phytophthora and Pythium Diversity From Rhododendron in Propagation, Container, and Field Production Systems of the Pacific Northwest

scientific article published on 05 May 2020

Spatial and Temporal Analysis of Populations of the Sudden Oak Death Pathogen in Oregon Forests

scientific article

Speciation in fungal and oomycete plant pathogens

scientific article

Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum

scientific article published in July 2009

Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus

scientific article published on 28 September 2006

Susceptibility in Viburnum to Phytophthora ramorum

scientific article published on 01 February 2008

Taxa: An R package implementing data standards and methods for taxonomic data

scientific article published on 5 March 2018

Taxa: An R package implementing data standards and methods for taxonomic data

scientific article published in 2018

Tests for Risk Assessment of Root Infection by Plant Pathogens

article

The 2009 Late Blight Pandemic in the Eastern United States – Causes and Results

scientific article published on 01 March 2013

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. ⬇️

scientific article

The Population Structure of Phytophthora infestans from the Toluca Valley of Central Mexico Suggests Genetic Differentiation Between Populations from Cultivated Potato and Wild Solanum spp.

scientific article

The Significance and Regulation of Soil Biodiversity—Proceedings of the International Symposium on Soil Biodiversity

The Top 10 oomycete pathogens in molecular plant pathology.

scientific article published on 11 December 2014

The biology of Phytophthora infestans at its center of origin

scientific article

The need for a dual hierarchical approach to study plant disease suppression

article

The plant pathogen Phytophthora andina emerged via hybridization of an unknown Phytophthora species and the Irish potato famine pathogen, P. infestans

scientific article published in 2011

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

scientific article

Transcriptome-derived amplicon sequencing (AmpSeq) markers elucidate the U.S. Podosphaera macularis population structure across feral and commercial plantings of Humulus lupulus

scientific article published on 12 October 2020

Unexpected conservation and global transmission of agrobacterial virulence plasmids

scientific article

Use of real-time PCR to examine the relationship between disease severity in pea and Aphanomyces euteiches DNA content in roots

Variation in Disease Severity Caused by Phytophthora cinnamomi, P. plurivora, and Pythium cryptoirregulare on Two Rhododendron Cultivars

Variation in Genetic Diversity of Phytophthora infestans Populations in Mexico from the Center of Origin Outwards

scientific article published on 24 May 2018

Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae

scientific article published on 6 July 2017

Whole genome sequences of the raspberry and strawberry pathogens Phytophthora rubi and P. fragariae

effectR: An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches

scientific article published on 18 July 2019

effectR: An expandable R package to predict candidate effectors

vcfr: a package to manipulate and visualize variant call format data in R.

scientific article

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