List of works by Scott V. Edwards

A cDNA macroarray approach to parasite-induced gene expression changes in a songbird host: genetic response of house finches to experimental infection by Mycoplasma gallisepticum

scientific article

A genomic schism in birds revealed by phylogenetic analysis of DNA strings

scientific article

A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines

scientific article

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

scientific article

A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences

scientific article

A proposal to sequence the genome of a garter snake (Thamnophis sirtalis) ⬇️

scientific article

A smörgåsbord of markers for avian ecology and evolution

scientific article published on 22 January 2008

A species tree for the Australo-Papuan Fairy-wrens and allies (Aves: Maluridae).

scientific article

Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response. ⬇️

scientific article published on 10 March 2015

Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes

scientific article

Avian MHC Evolution in the Era of Genomics: Phase 1.0.

scientific article published on 26 September 2019

Bicycling, Birding and #BLM across America in a Summer of Chaos

scientific article published in 2020

Boom-bust population dynamics drive rapid genetic change

scientific article published on 15 April 2024

Characterization, Polymorphism, and Evolution of MHC Class II B Genes in Birds of Prey

article

Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals

scientific article published on 2 June 2008

Cis-regulatory sequence variation and association with Mycoplasma load in natural populations of the house finch (Carpodacus mexicanus).

scientific article

Coalescent methods for estimating phylogenetic trees

scientific article

Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree".

scientific article published on October 2015

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

scientific article

Comparative genomics reveals insights into avian genome evolution and adaptation

scientific article

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

scientific article

Conceptual and empirical advances in Neotropical biodiversity research

scientific article published on 04 October 2018

Conflict between genetic and phenotypic differentiation: the evolutionary history of a 'lost and rediscovered' shorebird

scientific article published on 9 November 2011

Contrasting histories of avian and mammalian Mhc genes revealed by class II B sequences from songbirds

scientific article (publication date: 19 December 1995)

Convergent regulatory evolution and loss of flight in paleognathous birds

scientific article published on 01 April 2019

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

scientific article

Digitization and the Future of Natural History Collections

scientific article published on 17 January 2020

Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus).

scientific article

Earth BioGenome Project: Sequencing life for the future of life.

scientific article published on 23 April 2018

Ecology of avian influenza virus in birds.

scientific article published on February 2008

Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

scientific article published on 14 February 2019

Episodic population fragmentation and gene flow reveal a trade‐off between heterozygosity and allelic richness

Estimating phylogenetic trees from genome-scale data

scientific article

Estimating species phylogenies using coalescence times among sequences.

scientific article published on 16 July 2009

Estimating species trees using multiple-allele DNA sequence data

scientific article

Evidence for the Pleistocene Arc Hypothesis from genome-wide SNPs in a Neotropical dry forest specialist, the Rufous-fronted Thornbird (Furnariidae: Phacellodomus rufifrons)

scientific article published on 24 September 2020

Evidence from a house finch (Haemorhous mexicanus) spleen transcriptome for adaptive evolution and biased gene conversion in passerine birds

scientific article

Evolution and ecology of MHC molecules: from genomics to sexual selection

scientific article

Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes

scientific article

Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs

scientific article

Evolutionary genetics of Carpodacus mexicanus, a recently colonized host of a bacterial pathogen, Mycoplasma gallisepticum

scientific article published on 14 November 2006

Exploration of phylogenetic data using a global sequence analysis method

scientific article

Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni).

scientific article published on 16 May 2008

Feather development genes and associated regulatory innovation predate the origin of Dinosauria

scientific article

Frequent coinfection reduces RNA virus population genetic diversity

scientific article published on 4 July 2013

Gene duplication and fragmentation in the zebra finch major histocompatibility complex.

scientific article

Genome evolution in Reptilia, the sister group of mammals

scientific article published on January 2010

Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird

scientific article

Geographic differences in sexual reassortment in RNA phage

scientific article published on 19 August 2010

High gene flow on a continental scale in the polyandrous Kentish plover Charadrius alexandrinus.

scientific article

High-resolution species trees without concatenation

scientific article (publication date: 3 April 2007)

Hitchhiking and recombination in birds: evidence from Mhc-linked and unlinked loci in Red-winged Blackbirds (Agelaius phoeniceus)

scientific article published on 01 December 2004

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

scientific article

Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird

scientific article published on 19 April 2012

Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs

scientific article

Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008.

scientific article

MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus).

scientific article

Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus

scientific article published on 7 May 2015

Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3

scientific article

Molecular and paleontological evidence for a post-Cretaceous origin of rodents

scientific article

Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia

scientific article

Molecular evolution of the toll-like receptor multigene family in birds.

scientific article published on 14 January 2011

Molecular, functional and evolutionary characterization of the gene encoding HMG-CoA reductase in the fission yeast, Schizosaccharomyces pombe

scientific article published in September 1996

Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: implications for conservation

scientific article published on 13 June 2015

Multilocus phylogeography and phylogenetics using sequence-based markers

scientific article published on 24 July 2008

Multilocus phylogeography, population genetics and niche evolution of Australian brown and black-tailed treecreepers (Aves: <i>Climacteris</i>)

scientific article published in 2023

Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza).

scientific article

Multiple Instances of Adaptive Evolution in Aquaporins of Amphibious Fishes

Multiple phylogenetically distinct events shaped the evolution of limb skeletal morphologies associated with bipedalism in the jerboas

scientific article

Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene

scientific article published on 19 November 2018

Museums' role: increasing knowledge

scientific article published in March 2013

Natural selection and phylogenetic analysis

scientific article published on 26 May 2009

Next-generation QTL mapping: crowdsourcing SNPs, without pedigrees.

scientific article published in August 2013

Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)

scientific article (publication date: February 2009)

Origin of avian genome size and structure in non-avian dinosaurs

scientific article published on March 2007

Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis)

scientific article (publication date: September 2012)

Parallel evolution of tetrodotoxin resistance in three voltage-gated sodium channel genes in the garter snake Thamnophis sirtalis

scientific article

Patterns of variation in MHC class II beta loci of the little greenbul (Andropadus virens) with comments on MHC evolution in birds

scientific article

Phylogenetic analysis in the anomaly zone

scientific article published on 09 July 2009

Phylogenetics of modern birds in the era of genomics.

scientific article

Phylogenomic analyses data of the avian phylogenomics project

scientific article

Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation

scientific article published on 24 June 2015

Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations

article

Publisher Correction: The tuatara genome reveals ancient features of amniote evolution

scientific article published on 18 August 2020

Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird

scientific article

Re: Congruence and phylogenetic reanalysis of perching bird cytochrome b sequences

scientific article published on 01 April 1997

Recombination and nucleotide diversity in the sex chromosomal pseudoautosomal region of the emu, Dromaius novaehollandiae

scientific article

Reply to Gatesy and Springer: Claims of homology errors and zombie lineages do not compromise the dating of placental diversification

scientific article published on 24 October 2017

Reply to Gatesy and Springer: the multispecies coalescent model can effectively handle recombination and gene tree heterogeneity

scientific article published in March 2013

Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.

scientific article

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

scientific article

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

scientific article published on September 2015

Retraction of a thrush (Catharus guttatus) cytochrome b sequence

scientific article published on 01 March 1996

Sensory biology. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor.

scientific article

Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1.

scientific article published on 17 December 2013

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

scientific article

Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries

scientific article (publication date: 2011)

Sex-biased expression of sex-differentiating genes FOXL2 and FGF9 in American alligators, alligator Mississippiensis

scientific article

Songbird genomics: analysis of 45 kb upstream of a polymorphic Mhc class II gene in red-winged blackbirds (Agelaius phoeniceus).

scientific article

Speciation in birds: genes, geography, and sexual selection

scientific article

Structure and evolution of a new avian MHC class II B gene in a sub-Antarctic seabird, the thin-billed prion (Procellariiformes: Pachyptila belcheri).

scientific article

Tangled trees: the challenge of inferring species trees from coalescent and noncoalescent genes

scientific article

Temporal increase in organic mercury in an endangered pelagic seabird assessed by century-old museum specimens

scientific article (publication date: 3 May 2011)

The "Atlantis Forest hypothesis" does not explain Atlantic Forest phylogeography

scientific article published on 16 March 2016

The Anolis lizard genome: an amniote genome without isochores

scientific article

The evolution of a tropical biodiversity hotspot

scientific article

The evolution of bipedalism in jerboas (rodentia: Dipodoidea): origin in humid and forested environments

scientific article

The evolution of intron size in amniotes: a role for powered flight?

scientific article (publication date: 2012)

The genome of a songbird

scientific article

The genome of the green anole lizard and a comparative analysis with birds and mammals ⬇️

scientific article

The phylogenetic component of cooperative breeding in perching birds

scientific article published in May 1993

The tuatara genome reveals ancient features of amniote evolution

scientific article published on 5 August 2020

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

scientific article

Triploid plover female provides support for a role of the W chromosome in avian sex determination.

scientific article

Tuatara (Sphenodon) genomics: BAC library construction, sequence survey, and application to the DMRT gene family

scientific article

Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum

scientific article

Variability in sex-determining mechanisms influences genome complexity in reptilia

scientific article (publication date: 2009)

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Why sequence all eukaryotes?

scientific article published on 01 January 2022

Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard.

scientific article

slimr: An R package for tailor‐made integrations of data in population genomic simulations over space and time

Paulina is supported by:

About Paulina

Help