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List of works by Jonathan A. Eisen

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DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

scientific article
Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article
Environmental genome shotgun sequencing of the Sargasso Sea

scientific article (publication date: 2 April 2004)
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

scientific article published in March 2007
Insights into the phylogeny and coding potential of microbial dark matter

scientific article
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

scientific article
Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

scientific article
Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

scientific article
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

scientific article
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article
Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

scientific article (publication date: 25 July 1995)
Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

scientific article
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains

scientific article
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

scientific article published in March 2007
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article
The genome of the natural genetic engineer Agrobacterium tumefaciens C58

scientific article
Complete genome sequence of the Q-fever pathogen Coxiella burnetii

scientific article
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana

scientific article published in December 1999
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

scientific article
A simple, fast, and accurate method of phylogenomic inference

scientific article
Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system

scientific article
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

scientific article
An integrated pipeline for de novo assembly of microbial genomes

scientific article
Structure, variation, and assembly of the root-associated microbiomes of rice

scientific article
Complete genome sequence of Caulobacter crescentus

scientific article
PhyloSift: phylogenetic analysis of genomes and metagenomes

scientific article published on 9 January 2014
Comparative genomics of emerging human ehrlichiosis agents

scientific article
Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutionary Analysis

scientific article published on March 1, 1998
Drivers of bacterial beta-diversity depend on spatial scale

scientific article
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

scientific article
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella

scientific article
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

scientific article
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

scientific article
A phylogenomic study of DNA repair genes, proteins, and processes

scientific article
Evolution of sensory complexity recorded in a myxobacterial genome

scholarly article
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article
Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters

scientific article published in June 2006
TIGRFAMs: a protein family resource for the functional identification of proteins

scientific article
Unsuspected diversity among marine aerobic anoxygenic phototrophs

scientific article
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

scientific article
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

scientific article
Assembling the marine metagenome, one cell at a time

scientific article
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

scientific article
Evidence for symmetric chromosomal inversions around the replication origin in bacteria

scientific article
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

scientific article

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