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List of works by David Goodsell

1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors

scientific article published in July 2005

3D molecular models of whole HIV-1 virions generated with cellPACK.

scientific article published on 25 September 2014

<scp>PDB</scp>‐101: Educational resources supporting molecular explorations through biology and medicine

scientific article published in 2021

A hierarchical model of HIV-1 protease drug resistance.

scientific article published on January 2002

A semiempirical free energy force field with charge-based desolvation

scientific article (publication date: 30 April 2007)

A visual review of the human pathogen Streptococcus pneumoniae

scientific article

Art and Science of the Cellular Mesoscale

scientific article published on 21 March 2020

Art as a tool for science

scientific article published in 2021

Artophagy: the art of autophagy--the Cvt pathway

scientific article published on January 2010

Atomic Evidence: The Foundations of Structural Molecular Biology ⬇️

scientific article published on January 1, 2011

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

scientific article (publication date: December 2009)

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility

scientific article (publication date: December 2015)

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling

article

Automated docking to multiple target structures: incorporation of protein mobility and structural water heterogeneity in AutoDock

scientific article published in January 2002

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

Automated prediction of ligand-binding sites in proteins

scientific article published in March 2008

BioEditor-simplifying macromolecular structure annotation

scientific article published in May 2003

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments

scientific article published on 01 November 2018

Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models

scientific article

Computational docking of biomolecular complexes with AutoDock

scientific article published on 01 May 2009

Computational protein-ligand docking and virtual drug screening with the AutoDock suite

scientific article

Covalent docking using autodock: Two-point attractor and flexible side chain methods

scientific article published on 24 June 2015

DNA structure and drug interactions: structural, theoretical, and representational studies

PhD thesis by David Goodsell

Empirical entropic contributions in computational docking: evaluation in APS reductase complexes.

scientific article

Escherichia coli

scientific article published on 01 November 2009

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

scientific article published on 04 December 2020

Evolutionary analysis of HIV-1 protease inhibitors: Methods for design of inhibitors that evade resistance

scientific article

Filling in the gaps: artistic license in education and outreach

scientific article published in December 2007

Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives

scientific article published on 6 July 2016

From Atoms to Cells: Using Mesoscale Landscapes to Construct Visual Narratives

Illustrate: Software for Biomolecular Illustration

scientific article published on 10 September 2019

Illustrating the machinery of life: viruses

scientific article

Illustrations of the HIV life cycle

scientific article published on January 2015

Insights from 20 years of the Molecule of the Month

scientific article published on 17 June 2020

Instant Construction and Visualization of Crowded Biological Environments

scientific article published on 29 August 2017

Integrative illustration for coronavirus outreach

scientific article published on 06 August 2020

Integrative modeling of the HIV-1 ribonucleoprotein complex

scientific article published on 13 June 2019

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments

scientific article published on 20 August 2018

Late-onset retinal degeneration pathology due to mutations in CTRP5 is mediated through HTRA1

scientific article published on 05 August 2019

Lattice Models of Bacterial Nucleoids

scientific article published on 16 January 2018

Looking at molecules-an essay on art and science

scientific article published on 01 December 2003

Making the step from chemistry to biology and back

scientific article published in November 2007

Miniseries: Illustrating the machinery of life: Eukaryotic cell panorama.

scientific article published in March 2011

Mitochondrion ⬇️

scientific article published on May 1, 2010

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

scientific article published on 15 October 2020

Molecular Illustration in Research and Education: Past, Present, and Future

Neuromuscular synapse ⬇️

scientific article published on July 1, 2009

Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket

article

Preface

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences

scientific article (publication date: October 2010)

Protein flexibility in virtual screening: the BACE-1 case study

scientific article

Protein structure in context: the molecular landscape of angiogenesis.

scientific article

Putting proteins in context: scientific illustrations bring together information from diverse sources to provide an integrative view of the molecular biology of cells

scientific article published on 16 July 2012

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

scientific article published on 16 September 2020

RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules

article published in 2016

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

scientific article published on 29 November 2019

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

article

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

scientific article published on 19 November 2020

Rapid Diversity‐Oriented Synthesis in Microtiter Plates for In Situ Screening of HIV Protease Inhibitors ⬇️

scientific article published on November 7, 2003

Recognition highlights: Toll-like receptors

scientific article published on 01 September 2006

Recognition in action: DNA mimicry

scientific article published on 01 November 2005

Recognition in action: flipping pyrimidine dimers

scientific article

Redox-based probes for protein tyrosine phosphatases

scientific article published on 18 April 2011

Representing structural information with RasMol

scientific article published in October 2005

Revealing structural views of biology

scientific article

Selective and Effective: Current Progress in Computational Structure-Based Drug Discovery of Targeted Covalent Inhibitors

scientific article published on 02 November 2020

Structure-based virtual screening and biological evaluation of Mycobacterium tuberculosis adenosine 5'-phosphosulfate reductase inhibitors

scientific article published on 15 October 2008

Tactile teaching: Exploring protein structure/function using physical models*.

scientific article

The AutoDock Suite at 30

scientific article published on 17 August 2020

The Molecular Perspective: Epidermal Growth Factor ⬇️

scientific article published on January 1, 2003

The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology

scientific article

The RCSB Protein Data Bank: new resources for research and education

scientific article (publication date: 2013)

The RCSB Protein Data Bank: redesigned web site and web services

scientific article

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

scientific article

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

scientific article

The cAMP binding domain: an ancient signaling module

scientific article

The effects of the SUN project on teacher knowledge and self-efficacy regarding biological energy transfer are significant and long-lasting: results of a randomized controlled trial

scientific article

The evolution of the RCSB Protein Data Bank website

The molecular perspective: Bcl-2 and apoptosis

scientific article published on 01 January 2002

The molecular perspective: Bcl-2 and apoptosis

scientific article

The molecular perspective: Cisplatin

scientific article published on 01 March 2006

The molecular perspective: Cytochrome C and apoptosis

scientific article published in January 2004

The molecular perspective: DNA polymerase

scientific article

The molecular perspective: DNA polymerase.

scientific article published in January 2004

The molecular perspective: DNA topoisomerases

scientific article published on 01 January 2002

The molecular perspective: DNA topoisomerases

scientific article

The molecular perspective: L-asparaginase

scientific article published in March 2005

The molecular perspective: RAD51 and BRCA2

scientific article published on 01 October 2005

The molecular perspective: RAD51 and BRCA2.

scientific article

The molecular perspective: VEGF and angiogenesis

scientific article published on 01 January 2003

The molecular perspective: VEGF and angiogenesis

scientific article

The molecular perspective: alcohol

scientific article published on October 2006

The molecular perspective: antibodies

scientific article published on 01 January 2002

The molecular perspective: c-Abl tyrosine kinase

scientific article published on 01 October 2005

The molecular perspective: c-Abl tyrosine kinase

scientific article published on 01 January 2006

The molecular perspective: cadherin

scientific article published on 01 January 2002

The molecular perspective: cadherin

scientific article

The molecular perspective: cisplatin

scientific article

The molecular perspective: cyclins

scientific article published on 01 January 2004

The molecular perspective: cyclins

scientific article

The molecular perspective: cytochrome C and apoptosis

scientific article

The molecular perspective: double-stranded DNA breaks

scientific article published on 01 August 2005

The molecular perspective: double-stranded DNA breaks

scientific article

The molecular perspective: epidermal growth factor

scientific article

The molecular perspective: estrogen sulfotransferase

scientific article published on 01 April 2006

The molecular perspective: hepatitis B virus

scientific article

The molecular perspective: histone deacetylase

scientific article published in January 2003

The molecular perspective: histone deacetylase

scientific article

The molecular perspective: l-asparaginase.

scientific article published in May 2005

The molecular perspective: major histocompatibility complex

scientific article published in January 2005

The molecular perspective: major histocompatibility complex.

scientific article published in March 2005

The molecular perspective: morphine

scientific article published on 01 January 2004

The molecular perspective: morphine

scientific article

The molecular perspective: nicotine and nitrosamines

scientific article published on 01 January 2004

The molecular perspective: nicotine and nitrosamines

scientific article

The molecular perspective: polycyclic aromatic hydrocarbons

scientific article published on 01 January 2004

The molecular perspective: polycyclic aromatic hydrocarbons

scientific article published in January 2004

The molecular perspective: protein farnesyltransferase

scientific article published on January 2004

The molecular perspective: protein farnesyltransferase

scientific article published in January 2003

The molecular perspective: restriction endonucleases

The molecular perspective: restriction endonucleases

scientific article

The molecular perspective: tamoxifen and the estrogen receptor

scientific article published in January 2002

The molecular perspective: tamoxifen and the estrogen receptor

scientific article

The molecular perspective: tissue factor

scientific article published on July 2006

The molecular perspective: tumor necrosis factor

scientific article

The molecular perspective: ubiquitin and the proteosome

scientific article published in January 2003

The molecular perspective: ubiquitin and the proteosome

scientific article

Virtual Screening with AutoDock: Theory and Practice

scientific article

Visual methods from atoms to cells

scientific article

Visualising microorganisms from molecules to cells

scientific article published on 01 July 2014

Visualization of macromolecular structures.

scientific article

Visualizing biological data-now and in the future

scientific article

Winner of the 2016 Wellcome Image Awards

scientific article

cellPACK: a virtual mesoscope to model and visualize structural systems biology

scientific article

ePMV Embeds Molecular Modeling into Professional Animation Software Environments ⬇️

scientific article published on March 9, 2011

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