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List of works by G. Marius Clore

1.67-A X-ray structure of the B2 immunoglobulin-binding domain of streptococcal protein G and comparison to the NMR structure of the B1 domain

scientific article

13C NMR evidence for three slowly interconverting conformations of the dihydrofolate reductase-NADP+-folate complex

article

13C-detected HN(CA)C and HMCMC experiments using a single methyl-reprotonated sample for unambiguous methyl resonance assignment

scientific article published on 12 October 2006

1H-NMR studies on nucleotide binding to the catalytic sites of bovine mitochondrial F1-ATPase.

scientific article published on December 1988

3D NMR experiments for measuring 15N relaxation data of large proteins: application to the 44 kDa ectodomain of SIV gp41.

scientific article

A 3D triple-resonance NMR technique for qualitative measurement of carbonyl-Hβ J couplings in isotopically enriched proteins

A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

scientific article

A NMR experiment for simultaneous correlations of valine and leucine/isoleucine methyls with carbonyl chemical shifts in proteins

scientific article published on 18 December 2013

A Potential Involving Multiple Proton Chemical-Shift Restraints for Nonstereospecifically Assigned Methyl and Methylene Protons

article

A common interface on histidine-containing phosphocarrier protein for interaction with its partner proteins

scientific article published on 01 June 2000

A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams. 1991.

scientific article published in December 2011

A comparison of the restrained molecular dynamics and distance geometry methods for determining three-dimensional structures of proteins on the basis of interproton distances

article

A monoclonal Fab derived from a human nonimmune phage library reveals a new epitope on gp41 and neutralizes diverse human immunodeficiency virus type 1 strains.

scientific article

A novel membrane anchor function for the N-terminal amphipathic sequence of the signal-transducing protein IIAGlucose of the Escherichia coli phosphotransferase system

scientific article published on 01 December 2000

A nuclear magnetic resonance study of the ribotrinucleoside diphophate UpUpC.

scientific article published on August 1983

A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data

scientific article

A powerful method of sequential proton resonance assignment in proteins using relayed 15 N-1 H multiple quantum coherence spectroscopy

scientific article published on 01 January 1989

A proton nuclear magnetic resonance assignment and secondary structure determination of recombinant human thioredoxin.

scientific article

A proton nuclear magnetic resonance study of the conformation of bovine anaphylatoxin C5a in solution

scientific article published on 01 October 1988

A pseudopotential for improving the packing of ellipsoidal protein structures determined from NMR data.

scientific article

A rigid disulfide-linked nitroxide side chain simplifies the quantitative analysis of PRE data

scientific article

A short recollection on the paper entitled “A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams” by D.S. Garrett, R. Powers, A.M. Gronenborn, and G.M. Clore [

article

A simple and cost-effective protocol for high-yield expression of deuterated and selectively isoleucine/leucine/valine methyl protonated proteins in Escherichia coli grown in shaker flasks

scientific article published in 2021

A simple and reliable approach to docking protein-protein complexes from very sparse NOE-derived intermolecular distance restraints

scientific article published on 12 September 2006

A simple and robust protocol for high-yield expression of perdeuterated proteins in Escherichia coli grown in shaker flasks

scientific article published on 5 October 2016

A simple protocol for expression of isotope-labeled proteins in Escherichia coli grown in shaker flasks at high cell density

scientific article published on 01 November 2019

A small single-"finger" peptide from the erythroid transcription factor GATA-1 binds specifically to DNA as a zinc or iron complex

scientific article

A systematic case study on using NMR models for molecular replacement: p53 tetramerization domain revisited

scientific article published on 01 December 2000

A temperature-induced absorption band centred in the region of 666 nm related to the configuration of the active site in frozen cytochrome oxidase ⬇️

scientific article published on March 15, 1979

A three-dimensional potential of mean force to improve backbone and sidechain hydrogen bond geometry in Xplor-NIH protein structure determination

scientific article published on 27 October 2019

A two-dimensional nuclear overhauser enhancement experiment using semiselective soft pulses, and its applications to proteins

Abrogation of prenucleation, transient oligomerization of the Huntingtin exon 1 protein by human profilin I

scientific article published on 03 March 2020

Accurate Determination of Leucine and Valine Side-chain Conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] Isotope Labeling, NOE Pattern Recognition, and Methine Cγ–Hγ/Cβ–Hβ Residual Dipolar Couplings: Application to the 34-kDa

scientific article published on 01 October 2005

Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization

scientific article (publication date: August 2000)

Accurate orientation of the functional groups of asparagine and glutamine side chains using one- and two-bond dipolar couplings.

scientific article published in September 2001

Affinity maturation by targeted diversification of the CDR-H2 loop of a monoclonal Fab derived from a synthetic naïve human antibody library and directed against the internal trimeric coiled-coil of gp41 yields a set of Fabs with improved HIV-1 [...]

scientific article

Amplitudes of protein backbone dynamics and correlated motions in a small alpha/beta protein: correspondence of dipolar coupling and heteronuclear relaxation measurements

scientific article published on 01 August 2004

An S/T motif controls reversible oligomerization of the Hsp40 chaperone DNAJB6b through subtle reorganization of a β sheet backbone

scientific article published on 16 November 2020

An efficient and cost-effective isotope labeling protocol for proteins expressed in Escherichia coli

article

An efficient protocol for incorporation of an unnatural amino acid in perdeuterated recombinant proteins using glucose-based media

scientific article published on 17 February 2012

Analysis of an enzyme-substrate complex by x-ray crystallography and transferred nuclear overhauser enhancement measurements: porcine pancreatic elastase and a hexapeptide

article

Analysis of the backbone dynamics of interleukin-8 by 15N relaxation measurements.

scientific article published in March 1993

Analysis of the relative contributions of the nuclear Overhauser interproton distance restraints and the empirical energy function in the calculation of oligonucleotide structures using restrained molecular dynamics

article

Antibody elicited against the gp41 N-heptad repeat (NHR) coiled-coil can neutralize HIV-1 with modest potency but non-neutralizing antibodies also bind to NHR mimetics.

scientific article

Application of the z-COSY technique with a modified pulse sequence to measurement of coupling constants in macromolecules

scholarly article by Hartmut Oschkinat et al published December 1987 in Journal of Magnetic Resonance

Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation.

scientific article published in July 1993

Assignment of the side-chain proton and carbon-13 resonances of interleukin-1.beta. using double- and triple-resonance heteronuclear three-dimensional NMR spectroscopy

scientific article published on 01 September 1990

Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR

scientific article

Automated error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments: improved robustness and performance of the PASD algorithm

scientific article

Automated sequence- and stereo-specific assignment of methyl-labeled proteins by paramagnetic relaxation and methyl-methyl nuclear Overhauser enhancement spectroscopy.

scientific article published on 4 September 2011

Automatic phasing of pure phase absorption two-dimensional NMR spectra

Binding kinetics and substrate selectivity in HIV-1 protease-Gag interactions probed at atomic resolution by chemical exchange NMR.

scientific article published on 30 October 2017

Binding of HIV-1 gp41-directed neutralizing and non-neutralizing fragment antibody binding domain (Fab) and single chain variable fragment (ScFv) antibodies to the ectodomain of gp41 in the pre-hairpin and six-helix bundle conformations

scientific article

Biophysical Characterization of gp41 Aggregates Suggests a Model for the Molecular Mechanism of HIV-associated Neurological Damage and Dementia

scientific article published in Journal of Biological Chemistry

CO binding to mitochondrial mixed valence state cytochrome oxidase at low temperatures

scientific article published on 01 March 1980

Chaperonin GroEL accelerates protofibril formation and decorates fibrils of the Het-s prion protein.

scientific article published on 7 August 2017

Characterization and HIV-1 fusion inhibitory properties of monoclonal Fabs obtained from a human non-immune phage library selected against diverse epitopes of the ectodomain of HIV-1 gp41.

scientific article published on 30 September 2005

Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement.

scientific article

Characterization of the intermediates in the reaction of membrane-bound mixed-valence-state cytochrome oxidase with oxygen at low temperatures by optical spectroscopy in the visible region.

scientific article published on June 1980

Characterization of the intermediates in the reaction of mixed-valence state soluble cytochrome oxidase with oxygen at low temperatures by optical and electron-paramagnetic-resonance spectroscopy ⬇️

scientific article published on January 1, 1980

Characterization of the low-temperature intermediates of the reaction of fully reduced soluble cytochrome oxidase with oxygen by electron-paramagnetic-resonance and optical spectroscopy.

scientific article published on January 1980

Characterizing methyl-bearing side chain contacts and dynamics mediating amyloid β protofibril interactions using ¹³C(methyl)-DEST and lifetime line broadening

scientific article

Chi(1) rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force.

scientific article

Combined Use of Residual Dipolar Couplings and Solution X-ray Scattering To Rapidly Probe Rigid-Body Conformational Transitions in a Non-phosphorylatable Active-Site Mutant of the 128 kDa Enzyme I Dimer

scientific article

Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement

scientific article published in Science

Commentary on the article: Purification and characterization of the Ner repressor of bacteriophage Mu (1989) FEBS Lett. 244, 369-375 G. Kukolj, P.P. Tolias and M.S. DuBow

scientific article published on 01 July 1989

Comparison of four independently determined structures of human recombinant interleukin–4 ⬇️

scientific article published on May 1, 1994

Comparison of the solution nuclear magnetic resonance and X-ray crystal structures of human recombinant interleukin-1β

scientific article published on 01 September 1991

Comparison of the solution nuclear magnetic resonance and crystal structures of interleukin-8

scientific article published on 01 February 1991

Complete resonance assignment for the polypeptide backbone of interleukin 1.beta. using three-dimensional heteronuclear NMR spectroscopy

scientific article published on 01 April 1990

Completely automated, highly error-tolerant macromolecular structure determination from multidimensional nuclear overhauser enhancement spectra and chemical shift assignments

scientific article

Complexes of neutralizing and non-neutralizing affinity matured Fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41

scientific article (publication date: 2013)

Computer-aided sequential assignment of protein 1H NMR spectra

Concordance of residual dipolar couplings, backbone order parameters and crystallographic B-factors for a small alpha/beta protein: a unified picture of high probability, fast atomic motions in proteins

scientific article published on 01 February 2006

Confinement and Stabilization of Fyn SH3 Folding Intermediate Mimetics within the Cavity of the Chaperonin GroEL Demonstrated by Relaxation-Based NMR.

scientific article published on 3 February 2017

Conformation and dynamics of the Gag polyprotein of the human immunodeficiency virus 1 studied by NMR spectroscopy.

scientific article

Conformation of NAD+ bound to yeast and horse liver alcohol dehydrogenase in solution

scientific article published on 01 May 1982

Conformational changes in HIV-1 gp41 in the course of HIV-1 envelope glycoprotein-mediated fusion and inactivation.

scientific article

Conformational selection and substrate binding regulate the monomer/dimer equilibrium of the C-terminal domain of Escherichia coli enzyme I.

scientific article

Conformational selection of syn -cAMP upon binding to the cAMP receptor protein

scientific article published on 01 December 1981

Contrast-Matched Small-Angle X-ray Scattering from a Heavy-Atom-Labeled Protein in Structure Determination: Application to a Lead-Substituted Calmodulin–Peptide Complex

scientific article

Cooperative non-specific DNA binding of the N-terminal core of the cyclic AMP receptor protein of Escherichia coli and its modulation by cyclic AMP

scientific article published on 01 November 1983

Correction of the NMR structure of the ETS1/DNA complex

scientific article

Correlation between3hJNC‘and Hydrogen Bond Length in Proteins

scientific article published in 1999

Coupling between internal dynamics and rotational diffusion in the presence of exchange between discrete molecular conformations

scientific article published on January 2012

Covalent trimers of the internal N-terminal trimeric coiled-coil of gp41 and antibodies directed against them are potent inhibitors of HIV envelope-mediated cell fusion.

scientific article

Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping

scientific article

Crystal structures of the HIV-1 inhibitory cyanobacterial protein MVL free and bound to Man3GlcNAc2: structural basis for specificity and high-affinity binding to the core pentasaccharide from n-linked oligomannoside

scientific article

Decorrelating Kinetic and Relaxation Parameters in Exchange Saturation Transfer NMR: A Case Study of N-Terminal Huntingtin Peptides Binding to Unilamellar Lipid Vesicles

scientific article published on 12 September 2018

Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR.

scientific article published on March 1995

Dependence of distance distributions derived from double electron-electron resonance pulsed EPR spectroscopy on pulse-sequence time

scientific article published on 10 March 2015

Design of a novel peptide inhibitor of HIV fusion that disrupts the internal trimeric coiled-coil of gp41.

scientific article published on 21 February 2002

Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

scientific article

Detection of nuclear Overhauser effects between degenerate amide proton resonances by heteronuclear three-dimensional NMR spectroscopy

scientific article published in 1990

Determination of ligand conformation in macromolecular complexes using the transferred nuclear overhauser effect

scientific article published on 01 July 1990

Determination of the conformations of cyclic nucleotides bound to the N-terminal core of the cyclic AMP receptor protein of Escherichia coli by 1 H-NMR

scientific article published on 01 August 1982

Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP A1 protein using three-dimensional heteronuclear magnetic resonance spectroscopy.

scientific article

Determination of the secondary structure and folding topology of human interleukin-4 using three-dimensional heteronuclear magnetic resonance spectroscopy

article

Determination of the secondary structure of the DNA binding protein Ner from phage .mu. using proton homonuclear and nitrogen-15-proton heteronuclear NMR spectroscopy

scientific article published in 1989

Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing

scientific article

Determination of three-bond 1H3'-31P couplings in nucleic acids and protein-nucleic acid complexes by quantitative J correlation spectroscopy.

scientific article

Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy

scientific article

Determining methyl sidechain conformations in a CS-ROSETTA model using methyl 1H-13C residual dipolar couplings

scientific article published on 16 January 2020

Determining the structures of large proteins and protein complexes by NMR.

scientific article published on January 1998

Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins

article

Differential inhibition of HIV-1 and SIV envelope-mediated cell fusion by C34 peptides derived from the C-terminal heptad repeat of gp41 from diverse strains of HIV-1, HIV-2, and SIV.

scientific article

Direct Observation of Enhanced Translocation of a Homeodomain between DNA Cognate Sites by NMR Exchange Spectroscopy

scientific article published on 01 January 2006

Direct refinement against proton-proton dipolar couplings in NMR structure determination of macromolecules

scientific article published on 01 February 2000

Direct use of 15N relaxation rates as experimental restraints on molecular shape and orientation for docking of protein-protein complexes

scientific article

Disassembly/reassembly strategy for the production of highly pure GroEL, a tetradecameric supramolecular machine, suitable for quantitative NMR, EPR and mutational studies.

scientific article published on 22 September 2017

Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography

scientific article

Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics

scientific article published in March 2003

Dynamic equilibrium between closed and partially closed states of the bacterial Enzyme I unveiled by solution NMR and X-ray scattering.

scientific article

EDTA-derivatized deoxythymidine as a tool for rapid determination of protein binding polarity to DNA by intermolecular paramagnetic relaxation enhancement

scientific article

Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement

scientific article

Encounter complexes and dimensionality reduction in protein-protein association

scientific article published on 08 April 2014

Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule

scientific article

Evaluation of cross-correlation effects and measurement of one-bond couplings in proteins with short transverse relaxation times

scientific article published on 01 March 2000

Exchange saturation transfer and associated NMR techniques for studies of protein interactions involving high-molecular-weight systems

scientific article published on 12 August 2019

Experimental support for the "hydrophobic zipper" hypothesis

scientific article published in Science

Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation ⬇️

scientific article published on February 1, 2011

Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.

scientific article

Exploring translocation of proteins on DNA by NMR ⬇️

scientific article published on August 17, 2011

Extensive Sampling of the Cavity of the GroEL Nanomachine by Protein Substrates Probed by Paramagnetic Relaxation Enhancement

scientific article published on 07 June 2018

Four-dimensional carbon-13/carbon-13-edited nuclear Overhauser enhancement spectroscopy of a protein in solution: application to interleukin 1.beta

scientific article published on 01 January 1991

Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution

scientific article published in Science

Generating accurate contact maps of transient long-range interactions in intrinsically disordered proteins by paramagnetic relaxation enhancement

scientific article published on April 2013

Global Dynamics and Exchange Kinetics of a Protein on the Surface of Nanoparticles Revealed by Relaxation-Based Solution NMR Spectroscopy

scientific article published on 25 April 2016

Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct-1.

scholarly article

Heteronuclear NMR spectroscopy for lysine NH(3) groups in proteins: unique effect of water exchange on (15)N transverse relaxation

scientific article

High-resolution solution structure of the beta chemokine hMIP-1 beta by multidimensional NMR

scientific article

High-resolution solution structure of the double Cys2His2 zinc finger from the human enhancer binding protein MBP-1

scientific article published on April 28, 1992

High-resolution structure of Ascaris trypsin inhibitor in solution: direct evidence for a pH-induced conformational transition in the reactive site

scientific article

Histidine proton resonances of carbonmonoxyhaemoglobins A and Cowtown in chloride-free buffer

scientific article published on 01 May 1987

How much backbone motion in ubiquitin is required to account for dipolar coupling data measured in multiple alignment media as assessed by independent cross-validation?

scientific article published in March 2004

Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.

scientific article published on 7 January 2016

Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

scientific article

Impact of 15N R2/R1 relaxation restraints on molecular size, shape, and bond vector orientation for NMR protein structure determination with sparse distance restraints

scientific article

Impact of phosphorylation on structure and thermodynamics of the interaction between the N-terminal domain of enzyme I and the histidine phosphocarrier protein of the bacterial phosphotransferase system

scientific article published on 29 April 2008

Impact of protein/protein interactions on global intermolecular translocation rates of the transcription factors Sox2 and Oct1 between DNA cognate sites analyzed by z-exchange NMR spectroscopy

scientific article

Improvements and Extensions in the Conformational Database Potential for the Refinement of NMR and X-ray Structures of Proteins and Nucleic Acids

article

Improving NMR Structures of RNA

scientific article published on 2 April 2016

Improving the Packing and Accuracy of NMR Structures with a Pseudopotential for the Radius of Gyration

article

Improving the accuracy of NMR structures of RNA by means of conformational database potentials of mean force as assessed by complete dipolar coupling cross-validation

scientific article (publication date: 12 February 2003)

Inhibition of HIV Maturation via Selective Unfolding and Cross-Linking of Gag Polyprotein by a Mercaptobenzamide Acetylator

scientific article published on 13 May 2019

Interaction of Huntingtin Exon-1 Peptides with Lipid-Based Micellar Nanoparticles Probed by Solution NMR and Q-Band Pulsed EPR

scientific article published on 14 May 2018

Intercalation, DNA kinking, and the control of transcription.

scientific article published on February 1996

Interhelical angles in the solution structure of the oligomerization domain of p53: correction

scientific article published in Science

Interplay between conformational selection and induced fit in multidomain protein-ligand binding probed by paramagnetic relaxation enhancement.

scientific article published on 31 August 2013

Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR.

scientific article published on 6 March 2012

Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR.

scientific article

Intramolecular domain-domain association/dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled

scholarly article

Intrinsic unfoldase/foldase activity of the chaperonin GroEL directly demonstrated using multinuclear relaxation-based NMR.

scientific article published on 29 June 2015

Investigation of the structure and dynamics of the capsid-spacer peptide 1-nucleocapsid fragment of the HIV-1 gag polyprotein by solution NMR spectroscopy

scientific article

Kinetics of Fast Tetramerization of the Huntingtin Exon 1 Protein Probed by Concentration-Dependent On-Resonance R1ρ Measurements

scientific article published on 26 June 2020

Kinetics of amyloid beta monomer-to-oligomer exchange by NMR relaxation.

scientific article

Kinetics of folding of the all-beta sheet protein interleukin-1 beta

scientific article published in Science

Large interdomain rearrangement triggered by suppression of micro- to millisecond dynamics in bacterial Enzyme I.

scientific article

Localization of bound water in the solution structure of a complex of the erythroid transcription factor GATA-1 with DNA.

scientific article published on February 1994

Localization of bound water in the solution structure of the immunoglobulin binding domain of streptococcal protein G. Evidence for solvent-induced helical distortion in solution

scientific article published on February 20, 1992

Long Distance Measurements up to 160 Å in the GroEL Tetradecamer Using Q-Band DEER EPR Spectroscopy.

scientific article published on 17 November 2016

Long-range 15N-1H correlation as an aid to sequential proton resonance assignment of proteins. Application to the DNA-binding protein ner from phage Mu.

scientific article published in September 1988

Low resolution structure of interleukin-1β in solution derived from 1H15N heteronuclear three-dimensional nuclear magnetic resonance spectroscopy

scientific article published on 01 August 1990

Low-temperature kinetics of the reactions of fully reduced membrane-bound cytochrome oxidase with oxygen in the Soret, α and near-infrared regions ⬇️

scientific article published on February 1, 1979

MPSA short communications

article by Eugene M. Barnes et al published July 1994 in The Protein Journal

Magic-Angle-Pulse Driven Separation of Degenerate 1H Transitions in Methyl Groups of Proteins: Application to Studies of Methyl Axis Dynamics

scientific article published on 03 April 2020

Mapping the binding of the N-terminal extracellular tail of the CXCR4 receptor to stromal cell-derived factor-1alpha

scientific article published on 01 January 2005

Mapping the binding surface of interleukin-8 complexed with an N-terminal fragment of the Type 1 human interleukin-8 receptor

article

Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: direct demonstration of multiple binding modes

scientific article published in April 2004

Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements

scientific article

Minor groove-binding architectural proteins: structure, function, and DNA recognition.

scientific article

Modulation of specific binding of Lactobacillus casei dihydrofolate reductase to DNA by folinic acid

article

Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex

scientific article

Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex

scientific article

Molecular basis of sequence-specific single-stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single-stranded DNA

scientific article

Mutations Proximal to Sites of Autoproteolysis and the α-Helix That Co-evolve under Drug Pressure Modulate the Autoprocessing and Vitality of HIV-1 Protease

scientific article published on 12 August 2015

NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

scholarly article

NMR structure determination of proteins and protein complexes larger than 20 kDa

scientific article published on 01 October 1998

NMR-driven discovery of benzoylanthranilic acid inhibitors of far upstream element binding protein binding to the human oncogene c-myc promoter.

scientific article published in September 2004

New methods of structure refinement for macromolecular structure determination by NMR.

scientific article

No interaction of barrier-to-autointegration factor (BAF) with HIV-1 MA, cone-rod homeobox (Crx) or MAN1-C in absence of DNA

scientific article

Nuclear magnetic resonance study of the solution structure of α1-purothionin

scientific article published on 01 February 1987

Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR

scientific article

Optimized NMR Experiments for the Isolation of I=1/2 Manifold Transitions in Methyl Groups of Proteins

scientific article published on 05 December 2019

Optimized selection of slow-relaxing 13C transitions in methyl groups of proteins: application to relaxation dispersion

scientific article published on 01 October 2020

Peptides from second extracellular loop of C-C chemokine receptor type 5 (CCR5) inhibit diverse strains of HIV-1.

scientific article published on 8 March 2012

Practical Aspects of Paramagnetic Relaxation Enhancement in Biological Macromolecules

scientific article published on 02 July 2015

Practical and theoretical aspects of three-dimensional homonuclear Hartmann-Hahn-nuclear overhauser enhancement spectroscopy of proteins

Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

scientific article

Preparation of Uniformly Isotope-labeled DNA Oligonucleotides for NMR Spectroscopy

scientific article published in Journal of Biological Chemistry

Probing Conformational States of the Finger and Thumb Subdomains of HIV-1 Reverse Transcriptase Using Double Electron-Electron Resonance Electron Paramagnetic Resonance Spectroscopy.

scientific article

Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy.

scientific article

Probing initial transient oligomerization events facilitating Huntingtin fibril nucleation at atomic resolution by relaxation-based NMR

scientific article published on 11 February 2019

Probing the Binding Modes of a Multidomain Protein to Lipid-based Nanoparticles by Relaxation-based NMR.

scientific article published on 22 May 2017

Probing the interaction between HIV-1 protease and the homodimeric p66/p66' reverse transcriptase precursor by double electron-electron resonance EPR spectroscopy

scientific article published on 18 June 2020

Probing the mechanism of inhibition of amyloid-β(1-42)-induced neurotoxicity by the chaperonin GroEL ⬇️

scientific article published on 03 December 2018

Probing the rate-limiting step for intramolecular transfer of a transcription factor between specific sites on the same DNA molecule by (15)Nz-exchange NMR spectroscopy.

scientific article

Probing the sequence-specific interaction of the cyclic AMP receptor protein with DNA by site-directed mutagenesis.

scientific article published on March 1987

Probing the transient dark state of substrate binding to GroEL by relaxation-based solution NMR

scientific article published on 24 June 2013

Probing transient excited states of the bacterial cell division regulator MinE by relaxation dispersion NMR spectroscopy

scientific article published on 26 November 2019

Protection against nuclease cleavage of pBR322 DNA by the cAMP receptor protein of Escherichia coli

scientific article published on 01 May 1983

Protein NMR: Boundless opportunities

scientific article published on 09 July 2019

Proton nuclear magnetic resonance studies on cyclic nucleotide binding to the Escherichia coli adenosine cyclic 3',5'-phosphate receptor protein

scientific article published on 01 August 1982

Proton nuclear magnetic resonance study of hirudin: resonance assignment and secondary structure

scientific article published in 1987

Proton, carbon-13, and phosphorus-31 nuclear magnetic resonance studies of the dihydrofolate reductase-NADP-folate complex: characterization of three coexisting conformational states

scientific article published on 01 November 1982

Proton, nitrogen-15, carbon-13, carbon-13 monoxide assignments of human interleukin-4 using three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy

article

Quantitative Characterization of Configurational Space Sampled by HIV-1 Nucleocapsid Using Solution NMR, X-ray Scattering and Protein Engineering

scientific article

Quantitative Exchange NMR-Based Analysis of Huntingtin-SH3 Interactions Suggests an Allosteric Mechanism of Inhibition of Huntingtin Aggregation

scientific article published on 17 June 2021

Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions

scientific article published on 14 April 2020

Quantitative Resolution of Monomer-Dimer Populations by Inversion Modulated DEER EPR Spectroscopy.

scientific article published on 21 July 2016

Rapid identification of medium- to large-scale interdomain motion in modular proteins using dipolar couplings

scientific article published on 01 September 2001

Reaction of Mixed Valence State Cytochrome Oxidase with Oxygen in Plant Mitochondria: A STUDY BY LOW TEMPERATURE FLASH PHOTOLYSIS AND RAPID WAVELENGTH SCANNING OPTICAL SPECTROMETRY

scientific article published on 01 July 1981

Refined solution structure of the oligomerization domain of the tumour suppressor p53

scientific article

Refinement of the solution structure of the RNA-DNA hybrid 5′-[r(GCA)d(TGC)]2 Combined use of nuclear magnetic resonance and restrained molecular dynamics

scientific article published on 01 August 1988

Refolding proteins by gel filtration chromatography.

scientific article published on May 1994

Relaxation-optimized NMR spectroscopy of methylene groups in proteins and nucleic acids

scientific article published on 01 September 2004

Replica exchange simulations of transient encounter complexes in protein-protein association.

scholarly article

Reply to Marchenko et al.: Flux analysis of GroEL-assisted protein folding/unfolding.

scientific article published on 24 November 2015

Reversible steps in the bacteriorhodopsin photocycle ⬇️

scientific article published on April 15, 1992

Reweighted atomic densities to represent ensembles of NMR structures

scientific article published on 01 July 2002

Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement

scientific article published on 06 October 2007

Seeing the invisible by paramagnetic and diamagnetic NMR

scientific article

Sensitivity improvement for correlations involving arginine side-chain Nε/Hε resonances in multi-dimensional NMR experiments using broadband 15N 180° pulses

scientific article published on 12 October 2006

Sequence-specific determination of protein and peptide concentrations by absorbance at 205 nm

scientific article published on 29 April 2013

Sequential resonance assignment and secondary structure determination of the Ascaris trypsin inhibitor, a member of a novel class of proteinase inhibitors

article

Sequestering of the prehairpin intermediate of gp41 by peptide N36Mut(e,g) potentiates the human immunodeficiency virus type 1 neutralizing activity of monoclonal antibodies directed against the N-terminal helical repeat of gp41

scientific article

Slow conformational dynamics at the metal coordination site of a zinc finger

article

Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures

scientific article published on 18 October 2012

Solution NMR Structures of Productive and Non-productive Complexes between the A and B Domains of the Cytoplasmic Subunit of the Mannose Transporter of the Escherichia coli Phosphotransferase System

scientific article

Solution NMR structure of the 48-kDa IIAMannose-HPr complex of the Escherichia coli mannose phosphotransferase system

scientific article

Solution NMR structure of the barrier-to-autointegration factor-Emerin complex

scientific article

Solution Structure of the 128 kDa Enzyme I Dimer from Escherichia coli and Its 146 kDa Complex with HPr Using Residual Dipolar Couplings and Small- and Wide-Angle X-ray Scattering

scientific article

Solution Structure of the IIAChitobiose-HPr Complex of the N,N'-Diacetylchitobiose Branch of the Escherichia coli Phosphotransferase System

scientific article

Solution Structure of the IIAChitobiose-IIBChitobiose Complex of the N,N'-Diacetylchitobiose Branch of the Escherichia coli Phosphotransferase System

scientific article

Solution Structure of the Monovalent Lectin Microvirin in Complex with Man (1-2)Man Provides a Basis for Anti-HIV Activity with Low Toxicity

scientific article

Solution structure of a calmodulin-target peptide complex by multidimensional NMR

scientific article published on May 1, 1992

Solution structure of a post-transition state analog of the phosphotransfer reaction between the A and B cytoplasmic domains of the mannitol transporter IIMannitol of the Escherichia coli phosphotransferase system

scientific article published on 28 January 2006

Solution structure of cyanovirin-N, a potent HIV-inactivating protein

scientific article published on July 1, 1998

Solution structure of enzyme IIA(Chitobiose) from the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system

scientific article

Solution structure of recombinant hirudin and the Lys-47 .fwdarw. Glu mutants: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study

scientific article published in 1989

Solution structure of the DNA binding domain of HIV-1 integrase

scientific article

Solution structure of the Iγ subdomain of the Mu end DNA-binding domain of phage Mu transposase ⬇️

scientific article published on October 17, 1997

Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors

scientific article

Solution structure of the Mu end DNA-binding ibeta subdomain of phage Mu transposase: modular DNA recognition by two tethered domains.

scientific article published in December 1997

Solution structure of the N-terminal zinc binding domain of HIV-1 integrase

scientific article

Solution structure of the phosphoryl transfer complex between the cytoplasmic A domain of the mannitol transporter IIMannitol and HPr of the Escherichia coli phosphotransferase system

scientific article

Solution structure of the phosphoryl transfer complex between the signal transducing proteins HPr and IIAGlucose of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system

scientific article

Solution structure of the phosphoryl transfer complex between the signal-transducing protein IIAGlucose and the cytoplasmic domain of the glucose transporter IICBGlucose of the Escherichia coli glucose phosphotransferase system

scientific article (publication date: 4 July 2003)

Solvent isotope effect and protein stability

scientific article published on 01 October 1995

Sources of and solutions to problems in the refinement of protein NMR structures against torsion angle potentials of mean force.

scientific article published in October 2000

Spatial domain organization in the HIV-1 reverse transcriptase p66 homodimer precursor probed by double electron-electron resonance EPR

scientific article published on 05 August 2019

Spin-state selective carbon-detected HNCO with TROSY optimization in all dimensions and double echo-antiecho sensitivity enhancement in both indirect dimensions

scientific article published on 7 April 2007

Stereospecific assignment of beta-methylene protons in larger proteins using 3D 15N-separated Hartmann-Hahn and 13C-separated rotating frame Overhauser spectroscopy.

scientific article published in May 1991

Structural Basis of HIV-1 Neutralization by Affinity Matured Fabs Directed against the Internal Trimeric Coiled-Coil of gp41

scientific article

Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy.

scientific article

Structural basis for enzyme I inhibition by α-ketoglutarate

scientific article published on 29 March 2013

Structural basis of the association of HIV-1 matrix protein with DNA.

scientific article

Structural comparisons among the short-chain helical cytokines

scientific article published on 01 March 1994

Structure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution

scientific article

Structure and dynamics of KH domains from FBP bound to single-stranded DNA

scientific article

Structure of the Plasmodium 6-cysteine s48/45 domain

scientific article

Structure of the ribotrinucleoside diphosphate codon UpUpC bound to tRNAPhe from yeast. A time-dependent transferred nuclear Overhauser enhancement study.

scientific article published on March 1984

Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system.

scientific article

Structure-independent analysis of the breadth of the positional distribution of disordered groups in macromolecules from order parameters for long, variable-length vectors using NMR paramagnetic relaxation enhancement

scientific article

Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy

scientific article

Studies on the solution conformation of human thioredoxin using heteronuclear nitrogen-15-proton nuclear magnetic resonance spectroscopy

scientific article published on 01 February 1990

Sub-millisecond freezing coupled permits cryoprotectant-free EPR double electron-electron resonance spectroscopy

scientific article published on 07 May 2020

Symmetry and asymmetry in the function of Escherichia coli integration host factor: implications for target identification by DNA-binding proteins.

scientific article

Synergistic inhibition of HIV-1 envelope-mediated membrane fusion by inhibitors targeting the N and C-terminal heptad repeats of gp41.

scientific article published on 12 September 2006

TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules

scientific article published on 5 October 2007

Targeting a Dark Excited State of HIV-1 Nucleocapsid by Antiretroviral Thioesters Revealed by NMR Spectroscopy

scientific article published on 18 January 2018

Tautomeric state and pKa of the phosphorylated active site histidine in the N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system.

scientific article

Temperature-dependent intermediates in HIV-1 envelope glycoprotein-mediated fusion revealed by inhibitors that target N- and C-terminal helical regions of HIV-1 gp41.

scientific article published on June 2004

The 1-1 hard pulse: A simple and effective method of water resonance suppression in FT 1H NMR

The C34 Peptide Fusion Inhibitor Binds to the Six-Helix Bundle Core Domain of HIV-1 gp41 by Displacement of the C-Terminal Helical Repeat Region

scientific article

The VMD-XPLOR visualization package for NMR structure refinement

scientific article published on 01 April 2001

The Xplor-NIH NMR molecular structure determination package

scientific article (publication date: 2003)

The energetics of a three-state protein folding system probed by high-pressure relaxation dispersion NMR spectroscopy

scientific article published in September 2015

The extracellular domain of immunodeficiency virus gp41 protein: expression in Escherichia coli, purification, and crystallization.

scientific article

The impact of direct refinement against 13C alpha and 13C beta chemical shifts on protein structure determination by NMR.

scientific article

The influence of stereospecific assignments on the determination of three-dimensional structures of proteins by nuclear magnetic resonance spectroscopy

scientific article published on 01 January 1989

The length of the calmodulin linker determines the extent of transient interdomain association and target affinity.

scientific article published on 20 June 2013

The mechanism of reaction of ferricyanide-pretreated mixed-valence-state membrane-bound cytochrome oxidase with oxygen at 173 K ⬇️

scientific article published on September 1, 1978

The oligomerization domain of p53: Crystal structure of the trigonal form

scientific article published on 01 December 1996

The single Cys2-His2 zinc finger domain of the GAGA protein flanked by basic residues is sufficient for high-affinity specific DNA binding.

scientific article published on April 1996

The solution conformation of the antibacterial peptide cecropin A: a nuclear magnetic resonance and dynamical simulated annealing study.

scientific article published in October 1988

The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase

scientific journal article

The solution structure of a RNA pentadecamer comprising the anticodon loop and stem of yeast tRNAPhe. A 500 MHz 1H-n.m.r. study

scientific article

The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors 1 1Edited by P. E. Wright ⬇️

scientific article published on April 3, 1998

The solution structure of an HMG-I(Y)–DNA complex defines a new architectural minor groove binding motif

scientific article published on August 1, 1997

The solution structure of human thioredoxin complexed with its target from Ref-1 reveals peptide chain reversal

scientific article

The solution structure of the Leu22 → Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity 1 1Edited by P. E. Wright ⬇️

scientific article published on April 3, 1998

The solution structure of the Mu Ner protein reveals a helix-turn-helix DNA recognition motif

scientific article

The solution structure of the human ETS1-DNA complex reveals a novel mode of binding and true side chain intercalation

article

Theoretical and computational advances in biomolecular NMR spectroscopy

scientific article

Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

scientific article

Three-dimensional NMR spectroscopy of a protein in solution ⬇️

scientific article published on March 24, 1988

Three-dimensional solution structure of the 44kDa ectodomain of SIV gp41 ⬇️

scientific article published on August 17, 1998

Three-dimensional solution structure of the cytoplasmic B domain of the mannitol transporter IImannitol of the Escherichia coli phosphotransferase system.

scientific article published on 15 July 2004

Three-dimensional structure of acyl carrier protein in solution determined by nuclear magnetic resonance and the combined use of dynamical simulated annealing and distance geometry.

scientific article published in July 1988

Three-dimensional structure of phoratoxin in solution: combined use of nuclear magnetic resonance, distance geometry, and restrained molecular dynamics

article

Three-dimensional structure of potato carboxypeptidase inhibitor in solution. A study using nuclear magnetic resonance, distance geometry, and restrained molecular dynamics

article

Three-dimensional triple-resonance NMR of 13C/15N-enriched proteins using constant-time evolution

article

TiO2 Nanoparticles Catalyze Oxidation of Huntingtin Exon 1-Derived Peptides Impeding Aggregation: A Quantitative NMR Study of Binding and Kinetics

scientific article published on 26 December 2018

Tm filtering by 1H-methyl labeling in a deuterated protein for pulsed double electron-electron resonance EPR

scientific article published on 01 September 2020

Towards interpretation of intermolecular paramagnetic relaxation enhancement outside the fast exchange limit

scientific article

Transient HIV-1 Gag-protease interactions revealed by paramagnetic NMR suggest origins of compensatory drug resistance mutations

scientific article published on 17 October 2016

Transient, sparsely populated compact states of apo and calcium-loaded calmodulin probed by paramagnetic relaxation enhancement: interplay of conformational selection and induced fit.

scientific article published on 31 October 2011

Two-, three-, and four-dimensional NMR methods for obtaining larger and more precise three-dimensional structures of proteins in solution.

scientific article

Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis

scientific article published on 07 October 2019

Use of dipolar 1H–15N and 1H–13C couplings in the structure determination of magnetically oriented macromolecules in solution

scientific article published on September 1, 1997

Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings

scientific article

Using multiple quantum coherence to increase the 15N resolution in a three-dimensional TROSY HNCO experiment for accurate PRE and RDC measurements

scientific article published on 27 June 2009

Using small angle solution scattering data in Xplor-NIH structure calculations

scientific article (publication date: July 2014)

Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes.

scientific article

Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings.

scientific article

Visualization of transient encounter complexes in protein-protein association.

scientific article

Visualization of transient ultra-weak protein self-association in solution using paramagnetic relaxation enhancement.

scientific article published on 4 March 2008

Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement

scientific article

Visualizing transient dark states by NMR spectroscopy.

scientific article

Visualizing transient events in amino-terminal autoprocessing of HIV-1 protease.

scientific article

Water in the polar and nonpolar cavities of the protein interleukin-1β.

scientific article

Water suppression in two-dimensional spin-locked NMR experiments using a novel phase-cycling procedure

article

Where is NMR taking us?

scientific article published on August 1994

XIPP: multi-dimensional NMR analysis software

scientific article published on 20 November 2019

Xplor-NIH for Molecular Structure Determination from NMR and Other Data Sources

scientific article

Yeast tRNAAsp: codon and wobble codon-anticodon interactions. A transferred nuclear Overhauser enhancement study

scientific article published on 01 December 1984

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