List of works by Benjamin M. Good

A crowdsourcing workflow for extracting chemical-induced disease relations from free text

scientific article (publication date: 2016)

A new perspective on V3 phenotype prediction.

scientific article

A task-based approach for Gene Ontology evaluation

scientific article published on 15 April 2013

Air medical response to traumatic brain injury: a computer learning algorithm analysis.

scientific article published in April 2008

Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts

bioRxiv article

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts

scientific article published on 01 February 2020

Arachne: an OWL RL Reasoner Applied to Gene Ontology Causal Activity Models (and Beyond)

scientific article published in proceedings of the iswc 2018 posters & demonstrations, industry and blue sky ideas tracks

Author response: Wikidata as a knowledge graph for the life sciences

Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models

scientific article

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links

scientific article

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

scientific article (publication date: 31 January 2017)

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes

scientific article

ChlamBase: a curated model organism database for the Chlamydia research community.

correction

Citizen Science for Mining the Biomedical Literature

scientific article

Citizen Science for Mining the Biomedical Literature

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text

scientific article

Correction: Dizeez: An Online Game for Human Gene-Disease Annotation

scientific article published in PLoS ONE

Crowdsourcing and mining crowd data

scientific article

Crowdsourcing for bioinformatics

scientific article

Crowdsourcing in biomedicine: challenges and opportunities

scientific article published in January 2016

Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates.

scientific article published in September 2007

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs

scientific article

Dizeez: an online game for human gene-disease annotation

scientific article (publication date: 2013)

Edge: a framework for developing collective understanding [project]

Fast, cheap and out of control: a zero curation model for ontology development.

scientific article published on January 2006

Games with a scientific purpose

scientific article

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

scientific article published on 01 October 2019

Gene Wiki Reviews: marrying crowdsourcing with traditional peer review

scientific article published on 5 September 2013

Gene Wiki Reviews—Raising the quality and accessibility of information about the human genome

scientific article (publication date: November 2016)

Genetic attributes of cerebrospinal fluid-derived HIV-1 env.

scientific article

Genetic basis of hypersusceptibility to protease inhibitors and low replicative capacity of human immunodeficiency virus type 1 strains in primary infection

scientific article published on March 2004

Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy.

scientific article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

scientific article

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 9 November 2020

Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge

scientific article published on 23 March 2021

Knowledge.Bio: A Web application for exploring, building and sharing webs of biomedical relationships mined from PubMed

Linking Wikidata to the Rest of the Semantic Web ⬇️

scientific article (publication date: 19 February 2017)

Linking genes to diseases with a SNPedia-Gene Wiki mashup

scientific article

Microtask crowdsourcing for disease mention annotation in PubMed abstracts

scientific article

Mining the Gene Wiki for functional genomic knowledge

scientific journal article

Ontology engineering using volunteer labor

Opportunities and challenges presented by Wikidata in the context of biocuration ⬇️

scientific article (publication date: 29 November 2016)

Organizing knowledge to enable personalization of medicine in cancer

scientific article

Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii.

scientific article

Reactome and the Gene Ontology: digital convergence of data resources

scientific article

Science Game Lab: tool for the unification of biomedical games with a purpose

Semen-specific genetic characteristics of human immunodeficiency virus type 1 env.

scientific article

Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics

scientific article

Structured Reviews for Data and Knowledge Driven Research

Structured reviews for data and knowledge-driven research

scientific article published on 01 January 2020

Ten simple rules for cultivating open science and collaborative R&D;

scientific article (publication date: 2013)

The Gene Wiki in 2011: community intelligence applied to human gene annotation

scientific article published in 2011

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

scientific article

The Life Sciences Semantic Web is full of creeps!

scientific article published on 9 August 2006

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction

scientific article

The generation challenge programme platform: semantic standards and workbench for crop science

scientific article

ThinkLab as a vetting system for traditional grants

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata ⬇️

scientific article

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article

Wikidata as a knowledge graph for the life sciences ⬇️

scientific article published on 17 March 2020

Wikidata as a semantic framework for the Gene Wiki initiative ⬇️

scientific article

Wikidata as a semantic framework for the Gene Wiki initiative

bioRxiv preprint

Wikidata: A platform for data integration and dissemination for the life sciences and beyond ⬇️

2015 scientific article

genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website

scientific article (publication date: 15 December 2006)

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