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List of works by Jo Vandesompele

59-gene prognostic signature sub-stratifies high-risk neuroblastoma patients

article

A brief commentary on "Chromosomal aberrations in neuroblastoma cell lines identified by cross species color banding and chromosome painting"

scientific article published on 01 June 2002

A constitutional translocation t(1;17)(p36.2;q11.2) in a neuroblastoma patient disrupts the human NBPF1 and ACCN1 genes

scientific article

A dual fluorescent multiprobe assay for prion protein genotyping in sheep

scientific article

A high-throughput 3' UTR reporter screening identifies microRNA interactomes of cancer genes.

scientific article published on 9 March 2018

A mechanistic classification of clinical phenotypes in neuroblastoma

scientific article published on 01 December 2018

A new recurrent inversion, inv(7)(p15q34), leads to transcriptional activation of HOXA10 and HOXA11 in a subset of T-cell acute lymphoblastic leukemias

scientific article

A novel and universal method for microRNA RT-qPCR data normalization

scientific article

Aberrant methylation of candidate tumor suppressor genes in neuroblastoma

scientific article published on 25 September 2008

Aberrant splicing of the PTPRD gene mimics microdeletions identified at this locus in neuroblastomas

scientific article published on March 2008

Accurate RT-qPCR gene expression analysis on cell culture lysates

scientific article published on 13 January 2012

Accurate and objective copy number profiling using real-time quantitative PCR.

scientific article published on 06 January 2010

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

scientific article

Accurate outcome prediction in neuroblastoma across independent data sets using a multigene signature

scientific article

Accurate prediction of neuroblastoma outcome based on miRNA expression profiles

scientific article

Alternative Routes to Induce Naïve Pluripotency in Human Embryonic Stem Cells

scientific article published on 24 June 2015

Amphiregulin and epiregulin mRNA expression in primary tumors predicts outcome in metastatic colorectal cancer treated with cetuximab

scientific article published on 08 September 2009

An assessment of air as a source of DNA contamination encountered when performing PCR

scientific article published on December 2009

An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours.

scientific article published on 12 April 2010

An update on LNCipedia: a database for annotated human lncRNA sequences

scientific article published on 31 March 2015

An update on LNCipedia: a database for annotated human lncRNA sequences.

scientific article

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

scientific article published on 20 May 2010

Antitumor activity of the selective MDM2 antagonist nutlin-3 against chemoresistant neuroblastoma with wild-type p53.

scientific article

Application of laser capture microdissection in genetic analysis of neuroblastoma and neuroblastoma precursor cells

scientific article

ArrayCGH-based classification of neuroblastoma into genomic subgroups

scientific article published on December 2007

Asthma inflammatory phenotypes show differential microRNA expression in sputum

scientific article published in May 2016

Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes

scientific article published on 17 July 2019

CADM1 is a strong neuroblastoma candidate gene that maps within a 3.72 Mb critical region of loss on 11q23

scientific article

CASP8 SNP D302H (rs1045485) is associated with worse survival in MYCN-amplified neuroblastoma patients

scientific article

CLL cells respond to B-Cell receptor stimulation with a microRNA/mRNA signature associated with MYC activation and cell cycle progression

scientific article

Cancer gene prioritization for targeted resequencing using FitSNP scores

scientific article

Cancer-associated adipose tissue promotes breast cancer progression by paracrine oncostatin M and Jak/STAT3 signaling.

scientific article published on 24 September 2014

Chromosomal and microRNA expression patterns reveal biologically distinct subgroups of 11q- neuroblastoma

scientific article

Chromosome 3p microsatellite allelotyping in neuroblastoma: a report on the technical hurdles

scientific article

Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons

scientific article

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background.

scientific article

Comparative genomic hybridization (CGH) analysis of stage 4 neuroblastoma reveals high frequency of 11q deletion in tumors lackingMYCN amplification

scientific article published on 01 March 2001

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

scientific article published on 25 June 2015

Comparison of miRNA profiles of microdissected Hodgkin/Reed-Sternberg cells and Hodgkin cell lines versus CD77+ B-cells reveals a distinct subset of differentially expressed miRNAs

scientific article published on 22 September 2009

Comprehensive NF1 screening on cultured Schwann cells from neurofibromas

scientific article published in October 2006

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

publication published on 14 March 2022

Correlation between porcine PPARGC1A mRNA expression and its downstream target genes in backfat and longissimus dorsi muscle.

scientific article published in January 2009

Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR

scientific article published in Scientific Reports

Cross-Cohort Analysis Identifies a TEAD4-MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma

scientific article published on 6 March 2018

Custom long non-coding RNA capture enhances detection sensitivity in different human sample types

publication published on 01 September 2021

DNA methylation silences miR-132 in prostate cancer.

scientific article

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

scientific article

Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples

scientific article

Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGC1A.

scientific article

Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma

scientific journal article

Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data

article

Differential mucosal expression of Th17-related genes between the inflamed colon and ileum of patients with inflammatory bowel disease

scientific article

Differential polyadenylation of ribosomal RNA during post-transcriptional processing in Leishmania.

scientific article

Distinct Notch1 and BCL11B requirements mediate human γδ/αβ T cell development

scientific article published on 07 April 2020

Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas

scientific article published on 13 October 2008

EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research.

scientific article published on February 2017

EVI1 is consistently expressed as principal transcript in common and rare recurrent 3q26 rearrangements

scientific article

Early targets of miR-34a in neuroblastoma

scientific article

Effective Alu repeat based RT-Qpcr normalization in cancer cell perturbation experiments

scientific article

Elimination of primer-dimer artifacts and genomic coamplification using a two-step SYBR green I real-time RT-PCR.

scientific article published in April 2002

Escape from p53-mediated tumor surveillance in neuroblastoma: switching off the p14(ARF)-MDM2-p53 axis.

scientific article published on 25 September 2009

Evaluating the applicability of mouse SINEs as an alternative normalization approach for RT-qPCR in brain tissue of the APP23 model for Alzheimer's disease

scientific article published on 05 March 2019

Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications

scientific article

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

scientific article

Evidence for involvement of a tumor suppressor gene on 1p in malignant peripheral nerve sheath tumors

scientific article published in June 2003

Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome

scientific article

Expressed repetitive elements are broadly applicable reference targets for normalization of reverse transcription-qPCR data in mice.

scientific article

Expression Profiling Identifies the Noncoding Processed Transcript of HNRNPU with Proliferative Properties in Pancreatic Ductal Adenocarcinoma.

scientific article

Expression analyses identify MLL as a prominent target of 11q23 amplification and support an etiologic role for MLL gain of function in myeloid malignancies

scientific article published on 28 August 2003

Expression profiling suggests underexpression of the GABA(A) receptor subunit delta in the fragile X knockout mouse model

scientific article

External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data

scientific article

Flexible, scalable, and efficient targeted resequencing on a benchtop sequencer for variant detection in clinical practice

scientific article published on March 2015

Focal DNA copy number changes in neuroblastoma target MYCN regulated genes

scientific journal article

Functional analysis of the p53 pathway in neuroblastoma cells using the small-molecule MDM2 antagonist nutlin-3.

scientific article published on April 2011

Gene-expression profiling reveals distinct expression patterns for Classic versus Variant Merkel cell phenotypes and new classifier genes to distinguish Merkel cell from small-cell lung carcinoma

scientific article published on April 2004

Genetic heterogeneity of neuroblastoma studied by comparative genomic hybridization.

scientific article published in October 1998

Genome wide expression profiling of p53 regulated miRNAs in neuroblastoma

scientific article

Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers

scientific article

Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome

scientific article published on 19 October 2020

High ALK receptor tyrosine kinase expression supersedes ALK mutation as a determining factor of an unfavorable phenotype in primary neuroblastoma

scientific article

High resolution tiling-path BAC array deletion mapping suggests commonly involved 3p21-p22 tumor suppressor genes in neuroblastoma and more frequent tumors

scientific article published on February 2007

High-throughput PCR assay design for targeted resequencing using primerXL.

scientific article published on 6 September 2017

High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA.

scientific article published on 21 October 2008

How to do successful gene expression analysis using real-time PCR.

scientific article published on 05 December 2009

Hsa-mir-145 is the top EWS-FLI1-repressed microRNA involved in a positive feedback loop in Ewing's sarcoma ⬇️

scientific article published on January 10, 2011

Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes

scientific article published in January 2006

ID2 expression in neuroblastoma does not correlate to MYCN levels and lacks prognostic value

scientific article published in January 2003

Identification and expression analysis of genes associated with bovine blastocyst formation

scientific article

Identification of 2 putative critical segments of 17q gain in neuroblastoma through integrative genomics

scientific article published in March 2008

Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas

scientific article

Identification of an unbalanced X-autosome translocation by array CGH in a boy with a syndromic form of chondrodysplasia punctata brachytelephalangic type

scientific article

Identification of miR-145 as a key regulator of the pigmentary process

scientific article published on 16 August 2012

Identification of miRNAs contributing to neuroblastoma chemoresistance

scientific article published on 29 April 2015

Impact of RNA quality on reference gene expression stability

scientific article

Improved molecular diagnostics of idiopathic short stature and allied disorders: quantitative polymerase chain reaction-based copy number profiling of SHOX and pseudoautosomal region 1.

scientific article

Individual patient risk stratification of high-risk neuroblastomas using a two-gene score suited for clinical use.

scientific article published on 20 February 2015

Influence of microRNAs and Long Non-Coding RNAs in Cancer Chemoresistance.

scientific article published on 03 March 2017

Inhibition of CDK4/6 as a novel therapeutic option for neuroblastoma.

scientific article published on 30 July 2015

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes

article

Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer

scientific article

LIN28B induces neuroblastoma and enhances MYCN levels via let-7 suppression.

scientific article published on 7 October 2012

LNCipedia 5: towards a reference set of human long non-coding RNAs

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

scientific article (publication date: 2013)

Lack of association between MDM2 promoter SNP309 and clinical outcome in patients with neuroblastoma.

scientific article published on 4 January 2014

Localization and Expression of Nuclear Factor of Activated T-Cells 5 in Myoblasts Exposed to Pro-inflammatory Cytokines or Hyperosmolar Stress and in Biopsies from Myositis Patients.

scientific article

Localization of the 17q breakpoint of a constitutional 1;17 translocation in a patient with neuroblastoma within a 25-kb segment located between the ACCN1 and TLK2 genes and near the distal breakpoints of two microdeletions in neurofibromatosis type

scientific article

Long non-coding RNA expression profiling in the NCI60 cancer cell line panel using high-throughput RT-qPCR

scientific article published on 05 July 2016

Long non-coding RNAs in cutaneous melanoma: clinical perspectives.

scientific article

Long noncoding RNA expression profiling in cancer: Challenges and opportunities

scientific article published on 20 January 2019

Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia.

scientific article published on 10 May 2016

Loss-of-function mutations in LEMD3 result in osteopoikilosis, Buschke-Ollendorff syndrome and melorheostosis

scientific article

Low-cost dedicated mini-arrays for high-throughput analysis of DNA copy-number alterations in neuroblastoma

scientific article published on 13 June 2008

Lung tumours reprogram pulmonary dendritic cell immunogenicity at the microRNA level

scientific article published on 14 May 2014

Lysine-specific demethylase 1 restricts hematopoietic progenitor proliferation and is essential for terminal differentiation

scientific article

MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity

scientific article published on 01 November 2021

MYCN and ALKF1174L are sufficient to drive neuroblastoma development from neural crest progenitor cells

scientific article

MYCN-driven regulatory mechanisms controlling LIN28B in neuroblastoma

scientific article published on 26 June 2015

MYCN/c-MYC-induced microRNAs repress coding gene networks associated with poor outcome in MYCN/c-MYC-activated tumors.

scientific article

Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis

scientific article published on 26 January 2012

Measurable impact of RNA quality on gene expression results from quantitative PCR.

scientific article published on 11 February 2011

Melanoma addiction to the long non-coding RNA SAMMSON.

scientific article published in March 2016

Meta-analysis of neuroblastomas reveals a skewed ALK mutation spectrum in tumors with MYCN amplification

scientific article published on 18 August 2010

Meta-mining of neuroblastoma and neuroblast gene expression profiles reveals candidate therapeutic compounds

scientific article

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A.

scientific article published on 7 March 2013

MiR-34a deficiency accelerates medulloblastoma formation in vivo

scientific article

MicroRNA Profiling Reveals a Role for MicroRNA-218-5p in the Pathogenesis of Chronic Obstructive Pulmonary Disease.

scientific article

MicroRNA expression in induced sputum of smokers and patients with chronic obstructive pulmonary disease

scientific article published on 29 October 2010

MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer

scientific article

MicroRNA miR-885-5p targets CDK2 and MCM5, activates p53 and inhibits proliferation and survival

scientific article

MicroRNA-128-3p is a novel oncomiR targeting PHF6 in T-cell acute lymphoblastic leukemia

scientific article

MicroRNA-184 is a downstream effector of albuminuria driving renal fibrosis in rats with diabetic nephropathy

scientific article

MicroRNA-193b-3p acts as a tumor suppressor by targeting the MYB oncogene in T-cell acute lymphoblastic leukemia

scientific article

Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study

scientific article published on 14 July 2020

Model-Based Classification for Digital PCR: Your Umbrella for Rain

scientific article published on 28 March 2017

Modulation of neuroblastoma disease pathogenesis by an extensive network of epigenetically regulated microRNAs

scientific article

Molecular analysis of 1p36 breakpoints in two Merkel cell carcinomas ⬇️

scientific article published on September 1, 1998

Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

scientific article

Molecular dissection of isolated disease features in mosaic neurofibromatosis type 1.

scientific article

Monoallelic but not biallelic loss of Dicer1 promotes tumorigenesis in vivo

scientific article published on 18 December 2009

Multiplex Amplicon Quantification (MAQ), a fast and efficient method for the simultaneous detection of copy number alterations in neuroblastoma

scientific article

Murine M cells express annexin V specifically.

scientific article published in June 2006

N-cadherin in neuroblastoma disease: expression and clinical significance

scientific article

Neuroblastoma cells with overexpressed MYCN retain their capacity to undergo neuronal differentiation

scientific article published on April 2004

Neuroblastoma epigenetics: from candidate gene approaches to genome-wide screenings

scientific article published on August 2011

Neuroblastoma genetics and phenotype: a tale of heterogeneity

scientific article published on 04 August 2011

No Evidence for Correlation of DDX1 Gene Amplification With Improved Survival Probability in Patients With MYCN-Amplified Neuroblastomas

article

No evidence for involvement of SDHD in neuroblastoma pathogenesis

scientific article

Non-coding RNAs and respiratory disease.

scientific article

Non-coding RNAs in the pathogenesis of COPD.

scientific article published on 20 May 2015

Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products

scientific article

On determining the power of digital PCR experiments

scientific article published on 30 June 2018

Oncogenic activation of FOXR1 by 11q23 intrachromosomal deletion-fusions in neuroblastoma

scientific article

Pathological splice mutations outside the invariant AG/GT splice sites of BRCA1 exon 5 increase alternative transcript levels in the 5' end of the BRCA1 gene

scientific article

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

scientific article published on 26 November 2019

Pharmacologic activation of wild-type p53 by nutlin therapy in childhood cancer

scientific article

Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11

scientific article

Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions

scientific article published on 16 March 2008

Positive correlation between relative mRNA expression of PRNP and SPRN in cerebral and cerebellar cortex of sheep

scientific article published on 24 November 2008

Potential application of ELAVL4 real-time quantitative reverse transcription-PCR for detection of disseminated neuroblastoma cells.

scientific article published on 29 December 2005

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

scientific article

Predicting outcomes for children with neuroblastoma using a multigene-expression signature: a retrospective SIOPEN/COG/GPOH study

scientific article

Predicting outcomes for children with neuroblastoma.

scientific article published on July 2010

Primer sequence disclosure: a clarification of the MIQE guidelines.

scientific article

Prognostic and Therapeutic Implications of Circulating Androgen Receptor Gene Copy Number in Prostate Cancer Patients Using Droplet Digital Polymerase Chain Reaction.

scientific article published on 29 December 2017

Prognostic impact of gene expression-based classification for neuroblastoma.

scientific article published on 21 June 2010

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

scientific article (publication date: August 2008)

Quality control of digital PCR assays and platforms.

scientific article

Quantification of MYCN, DDX1, and NAG gene copy number in neuroblastoma using a real-time quantitative PCR assay

scientific article published in February 2002

Quantification of NF1 transcripts reveals novel highly expressed splice variants

scientific article published in July 2002

Quantitative and Functional Requirements for Bioluminescent Cancer Models

scientific article published on January 2016

Quantitative real time polymerase chain reaction for measurement of human interleukin-5 receptor alpha spliced isoforms mRNA

scientific article

RDML-Ninja and RDMLdb for standardized exchange of qPCR data

scientific article

RDML: structured language and reporting guidelines for real-time quantitative PCR data

scientific article

RNA expression signatures and posttranscriptional regulation in diabetic nephropathy.

scientific article published on August 2015

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

RNAcentral: a hub of information for non-coding RNA sequences

scholarly article published in Nucleic Acids Research

RT-qPCR gene expression analysis in zebrafish: Preanalytical precautions and use of expressed repetitive elements for normalization.

scientific article published on 4 March 2016

RTPrimerDB: the portal for real-time PCR primers and probes

scientific article published on 23 October 2008

RTPrimerDB: the real-time PCR primer and probe database

scientific article published on January 2003

RTPrimerDB: the real-time PCR primer and probe database, major update 2006.

scientific article

Rapid and easy prenatal diagnosis of sickle cell anemia using double-dye LNA probe technology.

scientific article published in February 2007

Rapid detection of VHL exon deletions using real-time quantitative PCR.

scientific article published in January 2005

Real-time quantitative PCR as an alternative to Southern blot or fluorescence in situ hybridization for detection of gene copy number changes

scientific article

Real-time quantitative allele discrimination assay using 3' locked nucleic acid primers for detection of low-percentage mosaic mutations

scientific article published on 14 August 2006

Reference loci for RT-qPCR analysis of differentiating human embryonic stem cells

scientific article

Regulation of peroxisomal genes by DHEA and vitamin D.

scientific article

Regulatory microRNA network identification in bovine blastocyst development

scientific article published on 15 March 2013

Renal microRNA- and RNA-profiles in progressive chronic kidney disease.

scientific article published on 28 December 2015

Reply: Direct Detection of Circulating MicroRNAs Unveiled the Absence of MicroRNA-218-5p in Smoker Subjects.

scientific article

Report of a female patient with mental retardation and tall stature due to a chromosomal rearrangement disrupting the OPHN1 gene on Xq12

scientific article published on 06 August 2007

Revised risk estimation and treatment stratification of low- and intermediate-risk neuroblastoma patients by integrating clinical and molecular prognostic markers

scientific article published on 17 September 2014

Secretome analysis of breast cancer-associated adipose tissue to identify paracrine regulators of breast cancer growth.

scientific article published on 3 May 2017

Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans

scientific article

Selection and validation of reference genes for accurate RT-qPCR gene expression normalization in cacao beans during fermentation

scientific article published on 27 January 2021

Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos

scientific article

Selection of reference genes for quantitative real-time PCR in equine in vivo and fresh and frozen-thawed in vitro blastocysts

scientific article

Single-nucleotide polymorphisms and other mismatches reduce performance of quantitative PCR assays

scientific article published on 6 September 2013

Small-molecule MDM2 antagonists as a new therapy concept for neuroblastoma

scientific article published on October 2006

Some cautionary notes on the petite "Holy Grail" of molecular diagnostics

scientific article published on March 2014

Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait

scientific article

Standardization of real-time PCR gene expression data from independent biological replicates

scientific article

Straightforward and sensitive RT-qPCR based gene expression analysis of FFPE samples

scientific article published on 22 February 2016

Structure and mutation analysis of the gene encoding DNA fragmentation factor 40 (caspase-activated nuclease), a candidate neuroblastoma tumour suppressor gene.

scientific article

Synthetic lethality between Rb, p53 and Dicer or miR-17-92 in retinal progenitors suppresses retinoblastoma formation

scientific article published on 5 August 2012

Target enrichment using parallel nanoliter quantitative PCR amplification.

scientific article

Targeted Genomic Screen Reveals Focal Long Non-Coding RNA Copy Number Alterations in Cancer Cell Lines

scientific article published on 13 September 2018

Targeted expression of mutated ALK induces neuroblastoma in transgenic mice.

scientific article published in July 2012

Targeted genomic screen reveals focal long non-coding RNA copy number alterations in cancer

Targeted resequencing and variant validation using pxlence PCR assays

scientific article published on 9 October 2015

Targeted therapy of <i>TERT</i>-rearranged neuroblastoma with BET bromodomain inhibitor and proteasome inhibitor combination therapy

scientific article published on 11 December 2020

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

scientific article (publication date: April 2009)

The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia

scientific article

The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation

scientific article published on 16 May 2018

The digital MIQE guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments

scientific article

The emerging molecular pathogenesis of neuroblastoma: implications for improved risk assessment and targeted therapy

scientific article published on 27 July 2009

The generation and use of recombinant extracellular vesicles as biological reference material

scientific article published on 23 July 2019

The human FOXL2 mutation database

scientific article

The impact of disparate isolation methods for extracellular vesicles on downstream RNA profiling

scientific article published on 18 September 2014

The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35

scientific article published on 05 November 2019

The miR-17-92 microRNA cluster regulates multiple components of the TGF-β pathway in neuroblastoma

scientific article published on December 2010

The microRNA body map: dissecting microRNA function through integrative genomics

scientific article published on 10 August 2011

The need for transparency and good practices in the qPCR literature.

scientific article published in November 2013

The transcriptome of lung tumor-infiltrating dendritic cells reveals a tumor-supporting phenotype and a microRNA signature with negative impact on clinical outcome

scientific article (publication date: 8 November 2016)

The von Hippel-Lindau tumor suppressor gene expression level has prognostic value in neuroblastoma

scientific article

Translating expression profiling into a clinically feasible test to predict neuroblastoma outcome

scientific article published in March 2007

Translocation-excision-deletion-amplification mechanism leading to nonsyntenic coamplification of MYC and ATBF1.

scientific article published on February 2006

Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma

scientific article

Unreliable real-time PCR analysis of human endogenous retrovirus-W (HERV-W) RNA expression and DNA copy number in multiple sclerosis.

scientific article

When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies

scientific article published on 01 August 2020

Whole-genome RT-qPCR microRNA expression profiling

scientific article published in January 2012

Widespread dysregulation of MiRNAs by MYCN amplification and chromosomal imbalances in neuroblastoma: association of miRNA expression with survival

scientific article

Zipper plot: visualizing transcriptional activity of genomic regions

scientific article

Zipper plot: visualizing transcriptional activity of genomic regions

scholarly article published 23 September 2016

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

scientific article

decodeRNA- predicting non-coding RNA functions using guilt-by-association.

scientific article published in January 2017

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis

scientific article

methGraph: a genome visualization tool for PCR-based methylation assays.

scientific article

miR-542-3p exerts tumor suppressive functions in neuroblastoma by downregulating Survivin

scientific article

miR-9, a MYC/MYCN-activated microRNA, regulates E-cadherin and cancer metastasis

scientific article

miRBase Tracker: keeping track of microRNA annotation changes.

scientific article

miRNA expression profiling enables risk stratification in archived and fresh neuroblastoma tumor samples

scientific article

miRNA expression profiling: from reference genes to global mean normalization

scientific article published in January 2012

miSTAR: miRNA target prediction through modeling quantitative and qualitative miRNA binding site information in a stacked model structure.

scientific article published on 15 December 2016

microRNAs in colon cancer: a roadmap for discovery

scientific article published on September 2012

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data

scientific article (publication date: 2007)

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