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List of works by Andra Waagmeester

A protocol for adding knowledge to Wikidata, a case report

scientific article published on 07 April 2020

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses ⬇️

January 2021 scholarly article

Acknowledging contributions to online expert assistance

Acknowledging contributions to online expert assistance

Acknowledging contributions to online expert assistance

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Applying linked data approaches to pharmacology: Architectural decisions and implementation ⬇️

scientific article

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

scientific article published in 2023

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020

BioHack24 report: Toward improving mechanisms for extracting RDF shapes from large inputs

BioHack24 report: Using discovered RDF schemes: a compilation of potential use cases for shapes reusage

Biological pathway abstractions: from two-dimensional drawings to multidimensional linked data ⬇️

PhD thesis of 2024 by Dr Andra Waagmeester

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes

scientific article

ChlamBase: a curated model organism database for the Chlamydia research community.

correction

Complex Portal 2022: new curation frontiers

scientific article

Documenting Biodiversity in Underrepresented Languages using Crowdsourcing

scientific article published on 11 September 2023

Documenting Biodiversity in Underrepresented Languages using Crowdsourcing ⬇️

journal article from 'Biodiversity Information Science and Standards' published in 2023

Enhancement and Reusage of Biomedical Knowledge Graph Subsets

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Exposing WikiPathways as Linked Open Data

FAIR Principles: Interpretations and Implementation Considerations

scholarly article

Fairmetrics/Metrics: Proposed Fair Metrics And Results Of The Metrics Evaluation Questionnaire

scholarly article published in March 2018

Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis

scientific article published in November 2005

Knowledge graphs and wikidata subsetting

scholarly article by José Emilio Labra Gayo published in April 2021

Linking Data and Descriptions on Moths Using the Wikimedia Ecosystem ⬇️

conference abstract

Linking Wikidata to the Rest of the Semantic Web ⬇️

scientific article (publication date: 19 February 2017)

Measuring impact in online resources with the CInumber (the CitedIn Number for online impact)

Nature Europe site should highlight most productive countries.

scientific article (publication date: 10 June 2010)

Opportunities and challenges presented by Wikidata in the context of biocuration ⬇️

scientific article (publication date: 29 November 2016)

Participative Decision Making and the Sharing of Benefits: Laws, ethics, and data protection for building extended global communities

scientific article

Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism

scientific article

Preface ⬇️

Rendering co-author graphs using linked-open-data from Wikidata

Scientific Lenses to Support Multiple Views over Linked Chemistry Data ⬇️

scientific article

Shape Expressions (ShEx) in Wikidata

Ten quick tips for editing Wikidata ⬇️

journal article from 'PLOS Computational Biology' published in 2023

Ten simple rules for creating reusable pathway models for computational analysis and visualization

scientific article published on 19 August 2021

The ChEMBL database as linked open data

scientific article (publication date: 2013)

The Distinction between Linguistic and Conceptual Semantics in Medical Terminology and its Implication for NLP-Based Knowledge Acquisition

scientific article published in 1998

The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)

The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research

scientific article published in 2014

The distinction between linguistic and conceptual semantics in medical terminology and its implication for NLP-based knowledge acquisition.

scientific article

The public road to high-quality curated biological pathways

scientific article published in October 2008

The role of bioinformatics in pathway curation

scientific article (publication date: December 2008)

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

scientific article published on 18 April 2022

Using Crowd-curation to Improve Taxon Annotations on the Wikimedia Infrastructure

scientific article published on 18 June 2019

Using Crowd-sourcing Platforms to Increase and Spread Knowledge on the Biodiversity in Sub-Saharan Africa

scholarly article

Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation

scholarly article from Zenodo

Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation ⬇️

scientific article published on 25 May 2019

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

scientific article

WikiCite: Citations needed for the sum of all human knowledge

Wikimania 2017 talk

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata ⬇️

scientific article

WikiPathways 2024: next generation pathway database

scientific article published on 6 November 2023

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

scientific article published on 10 November 2017

WikiPathways: capturing the full diversity of pathway knowledge

Research paper from 2016 about the WikiPathways database.

WikiPathways: connecting communities ⬇️

scientific article published on 19 November 2020

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020

Wikidata as a knowledge graph for the life sciences ⬇️

scientific article published on 17 March 2020

Wikidata as a linked-data hub for Biodiversity data

scientific article published on 18 June 2019

Wikidata as a semantic framework for the Gene Wiki initiative ⬇️

scientific article

Wikidata as a semantic framework for the Gene Wiki initiative

bioRxiv preprint

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification ⬇️

scholarly article by Annika Jacobsen published in December 2018

Wikidata subsetting: Approaches, tools, and evaluation

Wikidata: A platform for data integration and dissemination for the life sciences and beyond ⬇️

2015 scientific article

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