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List of works by Curtis Huttenhower

1100 - Dynamics of the Microbial Metaproteome in Inflammatory Bowel Disease

scholarly article published in May 2018

631 – Dietary Intake, H2S-Producing Microbes, and Risk of Colorectal Cancer

scholarly article

634 - Gut Microbial Factors Implicated in Disease Progression and Treatment Response in Pediatric Ulcerative Colitis

scholarly article published in May 2018

740 - Age-of-Onset Dependent Ileal Immune Maturation and Reduced Alpha-Defensin in Pediatric Crohn Disease with Already Established Dysbiosis

scholarly article published in May 2018

A Bayesian method for detecting pairwise associations in compositional data

scientific article

A Phase 1b safety study of SER-287, a spore-based microbiome therapeutic, for active mild to moderate ulcerative colitis

scientific article published on 04 August 2020

A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP)

scientific article

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

scientific article (publication date: 13 December 2016)

A framework for human microbiome research

scientific article

A framework for microbiome science in public health

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

scientific article

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy

scientific article published in 2012

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

scientific article

A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-l-proline.

scientific article

A quick guide to large-scale genomic data mining

scientific article

A reproducible approach to high-throughput biological data acquisition and integration

scientific article

A scalable method for integration and functional analysis of multiple microarray datasets

scientific article published on 27 September 2006

A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells.

scientific article published on 25 April 2018

A statistical model for describing and simulating microbial community profiles

scientific article published on 13 September 2021

A tiered hidden Markov model characterizes multi-scale chromatin states

scientific article (publication date: July 2013)

ASPirin Intervention for the REDuction of colorectal cancer risk (ASPIRED): a study protocol for a randomized controlled trial

scientific article published on February 2017

Abstract 4922:KRASandBRAFmutations influence correlation structure of locus-specific CpG island methylation and CIMP in colorectal cancer

Accessible, curated metagenomic data through ExperimentHub.

scientific article

Advancing the microbiome research community

scientific article

Age-of-diagnosis dependent ileal immune intensification and reduced alpha-defensin in older versus younger pediatric Crohn Disease patients despite already established dysbiosis

scientific article published in March 2019

Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer

scientific article published on 15 December 2017

American Diabetes Association and JDRF Research Symposium: Diabetes and the Microbiome

scientific article

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

scientific article published on 08 June 2020

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

scientific article

Antimicrobial Chemicals Are Associated with Elevated Antibiotic Resistance Genes in the Indoor Dust Microbiome

scientific article

Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors

scientific article published on 01 November 2018

Assessing the functional structure of genomic data

scientific article

Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum

scientific article

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.

scientific article

Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men

scientific article published on 20 January 2020

Association of Dietary Patterns With Risk of Colorectal Cancer Subtypes Classified by Fusobacterium nucleatum in Tumor Tissue

scientific article published on 26 January 2017

Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer

scientific article published on 03 February 2020

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

scientific article published on 8 April 2015

Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease

scientific article published on 01 May 2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

BAYESIAN DATA INTEGRATION: A FUNCTIONAL PERSPECTIVE

BAYESIAN DATA INTEGRATION: A FUNCTIONAL PERSPECTIVE

Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis

scientific article published on 01 May 2019

Bayesian data integration: a functional perspective

scientific article

Bayesian nonparametric cross-study validation of prediction methods ⬇️

Biodiversity and functional genomics in the human microbiome

scientific article

Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque

scientific article

Bioinformatics for the Human Microbiome Project

scientific article

Bone Marrow Is a Major Parasite Reservoir in Plasmodium vivax Infection.

scientific article

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

scientific article published on 29 September 2016

Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract

scientific article published on May 2015

Chapter 12: Human microbiome analysis

scientific article

Colorectal cancer: a tale of two sides or a continuum?

scientific article

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

scientific article

Comparative genomics and genome biology of Campylobacter showae.

scientific article published in January 2019

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer

scientific article

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T).

scientific article

Complex host genetics influence the microbiome in inflammatory bowel disease

scientific article

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

scientific article

Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course

article

Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer

scientific article

Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data

scientific article

Computational biology: plus c'est la même chose, plus ça change ⬇️

scientific article (publication date: 23 August 2011)

Computational meta'omics for microbial community studies

scientific article

Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis

scientific article

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

scientific article published on 05 August 2013

Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

scientific article

Correction: Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis

scientific article published on 25 July 2013

Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

scientific article published on 2 March 2015

Cross-biome comparison of microbial association networks

scientific article

Cross-study validation for the assessment of prediction algorithms

scientific article

Current concepts of the intestinal microbiota and the pathogenesis of infection

scientific article published on February 2011

Daylight exposure modulates bacterial communities associated with household dust

scientific article published in 2018

Delivery Mode Affects Stability of Early Infant Gut Microbiota

scientific article published on 22 December 2020

Detailing regulatory networks through large scale data integration

scientific article

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome

scientific article published on 11 December 2020

Determining microbial products and identifying molecular targets in the human microbiome

scientific article

Dietary lignans, plasma enterolactone levels, and metabolic risk in men: exploring the role of the gut microbiome

scientific article published on 29 March 2022

Directing experimental biology: a case study in mitochondrial biogenesis

scientific article

Discovery of bioactive microbial gene products in inflammatory bowel disease

scientific article published on 25 May 2022

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

scientific article

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

scientific article (publication date: 16 April 2012)

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

scientific article published on 16 April 2013

Enterotypes in the landscape of gut microbial community composition.

scientific article published on 18 December 2017

Epigenetic dysregulation of virulence gene expression in severe Plasmodium falciparum malaria

scientific article

Epigenomic diversity of colorectal cancer indicated by LINE-1 methylation in a database of 869 tumors

scientific article

Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

scholarly article published in Nature Methods

Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project

scientific article published on 12 October 2017

Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions

scientific article published on 01 November 2019

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

scientific article published in 2013

Experimental design and quantitative analysis of microbial community multiomics

scientific article published on 30 November 2017

Exploring the functional landscape of gene expression: directed search of large microarray compendia

scientific article

Exploring the human genome with functional maps

scientific article published on 26 February 2009

Expression profiling of archival tumors for long-term health studies

scientific article

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

scientific article published on 17 January 2019

Fecal Microbiome in Epidemiologic Studies-Letter

scientific article

Finding function: evaluation methods for functional genomic data

scientific article

Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice

scientific article published on July 2017

Functional and phylogenetic assembly of microbial communities in the human microbiome

scientific article

Functional profiling of the gut microbiome in disease-associated inflammation

scientific article published on 31 July 2013

Fusobacterium nucleatum and T Cells in Colorectal Carcinoma

scientific article

Fusobacterium nucleatum in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status

scientific article published on 18 September 2018

Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location

scientific article

Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis

scientific article published on 26 August 2015

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

scientific article

Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota

scientific article published on 10 October 2013

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

scientific article

Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.

scientific article published on 17 December 2018

Genomics in 2011: challenges and opportunities

scientific article published on 28 December 2011

Global assessment of genomic regions required for growth in Mycobacterium tuberculosis

scientific article

Global chemical effects of the microbiome include new bile-acid conjugations

scientific article published on 26 February 2020

Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans

scientific article

Graphle: Interactive exploration of large, dense graphs

scientific article (publication date: 14 December 2009)

Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease

scientific article published on 20 January 2020

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

scientific article

Gut microbiome structure and metabolic activity in inflammatory bowel disease

scientific article published on 10 December 2018

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

scientific article published on 01 June 2019

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

scientific article published on 18 December 2015

Host and gut microbiota symbiotic factors: lessons from inflammatory bowel disease and successful symbionts

scientific article

Host genetic variation and its microbiome interactions within the Human Microbiome Project

scientific article published on 29 January 2018

Human gut bacteria produce Τ17-modulating bile acid metabolites

scientific article published in March 2022

Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013

scientific article

Human threat learning is associated with gut microbiota composition

Hypomethylation of the IGF2 DMR in colorectal tumors, detected by bisulfite pyrosequencing, is associated with poor prognosis

scientific article

Identification of Natural CRISPR Systems and Targets in the Human Microbiome

scientific article published on 16 November 2020

Identifying personal microbiomes using metagenomic codes

scientific article published on 11 May 2015

Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation

scientific article published on July 2017

Infected erythrocyte-derived extracellular vesicles alter vascular function via regulatory Ago2-miRNA complexes in malaria

scientific article published on 10 October 2016

Inferring developmental stage composition from gene expression in human malaria

scientific article (publication date: 2013)

Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD).

scientific article published on March 2011

Inflammatory bowel disease as a model for translating the microbiome

scientific article

Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana

scientific article published on 31 December 2010

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

scientific article published on 05 June 2013

Integrative approaches for microarray data analysis

scientific article

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

scientific article published on 8 October 2016

Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis

scientific article published on 2 February 2016

Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women

scientific article published on 9 January 2017

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity

scientific article published on 01 December 2016

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity ⬇️

scientific article

Long-term use of antibiotics and risk of colorectal adenoma

scientific article published on 4 April 2017

Low Tristetraprolin Expression Is Associated with Lethal Prostate Cancer

scientific article published on 12 November 2018

Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012.

scientific article

Meta'omic analytic techniques for studying the intestinal microbiome

scientific article published on 28 January 2014

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

article published in 2015

MetaRef: a pan-genomic database for comparative and community microbial genomics

scientific article

Metabolic reconstruction for metagenomic data and its application to the human microbiome

scientific article published in 2012

Metagenomic biomarker discovery and explanation

scientific article published on 24 June 2011

Metagenomic microbial community profiling using unique clade-specific marker genes

scientific article

Metatranscriptome of human faecal microbial communities in a cohort of adult men.

scientific article published on 15 January 2018

Microbial co-occurrence relationships in the human microbiome

scientific article

Microbial community function and biomarker discovery in the human microbiome

scientific article published on 19 September 2011

Microbial community function and biomarker discovery in the human microbiome

Microbial strain-level population structure and genetic diversity from metagenomes

scientific article published on 06 February 2017

Microbiome Biomarkers: One Step Closer in NAFLD-Cirrhosis

scientific article published on 29 November 2020

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Microbiota Contribute to Obesity-related Increases in the Pulmonary Response to Ozone

scientific article published on 01 December 2019

Mo1306 Rapid and Accurate Inference of Gene Expression in Difficult-to-Isolate Cell Types

article

Mobilizable antibiotic resistance genes are present in dust microbial communities

scientific article published on 23 January 2020

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

article

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Multivariable association discovery in population-scale meta-omics studies

scientific article published on 16 November 2021

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis

scientific article

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

scientific article published on June 2016

Naturally acquired immunity against immature Plasmodium falciparum gametocytes

scientific article published on 01 June 2019

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

scientific article

Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017

article

Novel application of structural equation modeling to correlation structure analysis of CpG island methylation in colorectal cancer

scientific article

Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition

scientific article published on 06 August 2019

Optimized application of penalized regression methods to diverse genomic data

scientific article

P700 Evaluation of location-specific, tissue-associated microbiota in the ileal pouch, terminal ileum and colon in inflammatory bowel disease (IBD)

PICRUSt2 for prediction of metagenome functions

scientific article published on 01 June 2020

Paneth cell defects in Crohn's disease patients promote dysbiosis

scientific article published on 02 June 2016

Passing messages between biological networks to refine predicted interactions

scientific article

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

scientific article

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

scientific article

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

scientific article published on 02 December 2019

Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow.

scientific article published on 23 May 2018

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

scientific article

Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

scientific article published on September 2017

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

scientific article published on 19 May 2020

Predicting cellular growth from gene expression signatures

scientific article

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study

scientific article published on March 2017

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

scientific article (publication date: September 2013)

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

scientific article published on 17 July 2019

Predictors of lymph node count in colorectal cancer resections: data from US nationwide prospective cohort studies

scientific article

Proceedings of the third international molecular pathological epidemiology (MPE) meeting

scientific article

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

scientific article published on 13 February 2018

Publisher Correction: Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life

scientific article published on 01 March 2019

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QseC inhibition as an antivirulence approach for colitis-associated bacteria

scientific article published on 15 December 2016

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

scientific article published in 2023

Relating the metatranscriptome and metagenome of the human gut.

scientific article

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

scientific article published on 29 March 2012

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

scientific article

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

scientific article

STAT3 expression, molecular features, inflammation patterns, and prognosis in a database of 724 colorectal cancers

scientific article

Sa1910 – Life Course Antibiotic Use and Alterations in the Gut Microbiome in a Cohort of Older Men

scholarly article

Sa2033 – Short- and Long-Term Alcohol Intake and Alterations in the Gut Microbiome Among Healthy Individuals

scholarly article

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems

scientific article published on 16 August 2017

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

scientific article published on 27 April 2015

Sex Differences in Pulmonary Responses to Ozone in Mice. Role of the Microbiome

scientific article published on 01 February 2019

Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components

scientific article

Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes

scientific article

Sixty years of genome biology

scientific article published on 25 April 2013

Skin microbiome imbalance in patients with STAT1/STAT3 defects impairs innate host defense responses

scientific article

Species-level functional profiling of metagenomes and metatranscriptomes

scholarly article by Eric A Franzosa published in October 2018

Stability of the human faecal microbiome in a cohort of adult men.

scientific article published on 15 January 2018

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

article

Strain-level epidemiology of microbial communities and the human microbiome

scientific article published on 13 August 2020

Strains, functions and dynamics in the expanded Human Microbiome Project

scientific article

Structure of the Mucosal and Stool Microbiome in Lynch Syndrome

scientific article published on 01 April 2020

Structure, function and diversity of the healthy human microbiome

scientific article

Su1940 - Dietary Patterns, Sulfur Intake, and the Abundance of Sulfate-Reducing Bacteria

scholarly article published in May 2018

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

scientific article published on 17 February 2016

The Amount of Bifidobacterium Genus in Colorectal Carcinoma Tissue in Relation to Tumor Characteristics and Clinical Outcome

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone

scientific article

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

scholarly article published by Päivi Pöhö in 2016

The Human Microbiome Project: a community resource for the healthy human microbiome

scientific article

The Microbiome Regulates Pulmonary Responses to Ozone in Mice

scientific article published on 01 September 2018

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

scientific article published on 10 October 2019

The Role of Gut Microbiome in the Pathogenesis of Prostate Cancer: A Prospective, Pilot Study

scientific article published on 6 September 2017

The Sleipnir library for computational functional genomics

scientific article

The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes

scientific article published on 5 February 2015

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment

scientific article

The healthy human microbiome

scientific article

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

scientific article published in Nature

The human gut microbiota in people with amyotrophic lateral sclerosis

scientific article published on 02 November 2020

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction

scientific article published on 26 June 2009

The interleukin-33 receptor contributes to pulmonary responses to ozone in male mice: role of the microbiome

scientific article published on 27 August 2019

The microbiome quality control project: baseline study design and future directions

scientific article published on 9 December 2015

The treatment-naive microbiome in new-onset Crohn's disease

scientific article

The vaginal microbiota is altered in women with inflammatory bowel disease

scholarly article

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies ⬇️

scientific article published on September 12, 2011

Transcriptional profiling defines dynamics of parasite tissue sequestration during malaria infection

scientific article

Translating microbiome futures

scientific article published on 01 November 2018

Translating the human microbiome

scientific article published in April 2013

Triclosan Tolerance Is Driven by a Conserved Mechanism in Diverse <i>Pseudomonas</i> Species

scientific article published on 11 March 2021

Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing

scientific article published on December 2013

Tu1875 – Chronic Antibiotic Use and Subsequent Development of Diverticulitis

scholarly article

Two-stage microbial community experimental design

scientific article published on 15 August 2013

Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response

scientific article published in Nature Communications

Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing

scientific article

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

scientific article

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

scientific article published on May 2016

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

scientific article published on 01 June 2016

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

scientific article

Western-Style Diet, pks Island-Carrying Escherichia coli, and Colorectal Cancer: Analyses From Two Large Prospective Cohort Studies

scientific article published in 2022

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach

scientific article published on 21 January 2021

bioBakery: A meta'omic analysis environment

scientific article published in April 2018

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome

scientific article

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