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List of works by Chen Xuemei

25 Years of thermomorphogenesis research: milestones and perspectives

scientific article published in October 2023

A marked end.

scientific article published in April 2007

A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development

scientific article (publication date: 26 March 2004)

A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects.

scientific article published on 10 February 2016

A silencing safeguard: links between RNA silencing and mRNA processing in Arabidopsis

scientific article published on June 2008

A spontaneous thermo-sensitive female sterility mutation in rice enables fully mechanized hybrid breeding

scientific article published in October 2022

A uniform system for microRNA annotation

scientific article

AGAMOUS terminates floral stem cell maintenance in Arabidopsis by directly repressing WUSCHEL through recruitment of Polycomb Group proteins

scientific article

APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana

scientific article

ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis

scientific article

ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis

scientific article

AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy

scientific article

An advanced protocol for profiling RNA-binding proteins in Arabidopsis using plant phase extraction

scientific article published in January 2023

Ancient Origin and Recent Innovations of RNA Polymerase IV and V.

scientific article

Anterograde signaling controls plastid transcription via sigma factors separately from nuclear photosynthesis genes

scientific article published on 2 December 2022

Approaches for studying microRNA and small interfering RNA methylation in vitro and in vivo.

scientific article published on January 2007

Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis

scientific article published on 26 June 2022

Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation

scientific article published on 3 April 2023

Arabidopsis transcription factor TCP4 controls the identity of the apical gynoecium

scientific article published on 2 July 2024

Author Correction: The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs

scientific article published in Nature Communications

Biochemical activities of Arabidopsis RNA-dependent RNA polymerase 6

scientific article published on 06 December 2007

Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

article published in the Proceedings of the National Academy of Sciences of the United States of America

Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis

scientific article published on 12 December 2016

Biogenesis, turnover, and mode of action of plant microRNAs

scientific article

CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

scientific article

Chemical genetic screens using Arabidopsis thaliana seedlings grown on solid medium

scientific article published on January 2015

Computational prediction of novel non-coding RNAs in Arabidopsis thaliana

scientific article

Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis

scientific article published on 25 April 2016

Conservation and divergence of small RNA pathways and microRNAs in land plants.

scientific article published on 23 August 2017

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

DICER-LIKE2 plays a primary role in transitive silencing of transgenes in Arabidopsis.

scientific article

DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis

scientific article (publication date: July 2014)

DNA topoisomerase I affects polycomb group protein-mediated epigenetic regulation and plant development by altering nucleosome distribution in Arabidopsis.

scientific article

Degradation of microRNAs by a family of exoribonucleases in Arabidopsis

scientific article

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

scientific article

Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana

scientific article published on 7 June 2012

Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.

scientific article published on 30 April 2015

Dynamics of histone H3 lysine 27 trimethylation in plant development.

scientific article

Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis

scientific article published on 17 February 2012

FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis

scientific article

FIERY1 promotes microRNA accumulation by suppressing rRNA-derived small interfering RNAs in Arabidopsis

scientific article published on 27 September 2019

Fast-suppressor screening for new components in protein trafficking, organelle biogenesis and silencing pathway in Arabidopsis thaliana using DEX-inducible FREE1-RNAi plants

scientific article published on 14 May 2015

Floral patterning defects induced by Arabidopsis APETALA2 and microRNA172 expression in Nicotiana benthamiana

scientific article published on July 2006

Focus on RNA biology

scientific article published on 29 May 2023

Function of the Chlamydomonas reinhardtii petd 5' untranslated region in regulating the accumulation of subunit IV of the cytochrome b6/f complex

scientific article published on 01 October 1994

Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana

scientific article (publication date: 5 April 2013)

Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress

scientific article published on 08 August 2019

Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing

scientific article

HEN1 SUPPRESSOR1 stabilizes polymerase IV RNAs via uridylation in Arabidopsis

scientific article published on 22 May 2023

HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide

scientific article

HSP90 inhibitors stimulate DNAJB4 protein expression through a mechanism involving N6-methyladenosine

scientific article published on 09 August 2019

HUA ENHANCER3 reveals a role for a cyclin-dependent protein kinase in the specification of floral organ identity in Arabidopsis

scientific article

HUA1 and HUA2 are two members of the floral homeotic AGAMOUS pathway

scientific article published on March 1999

HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein

scientific article published in October 2001

High resolution RNA-seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in <i>Arabidopsis thaliana</i>

scientific article published on 27 May 2021

Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize

scientific article published on 18 July 2019

INDETERMINATE1 autonomously regulates phosphate homeostasis upstream of the miR399-<i>ZmPHO2</i>signaling module in maize

scientific article published in 2023

Intercellular and systemic trafficking of RNAs in plants

article

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

scientific article

KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis

scientific article published on 29 December 2017

LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers ⬇️

scientific article published on June 1, 2011

Linking key steps of microRNA biogenesis by TREX-2 and the nuclear pore complex in Arabidopsis

scientific article published on 20 July 2020

Mechanisms of microRNA turnover

scientific article

Mechanisms that impact microRNA stability in plants.

scientific article published on 20 September 2012

Methylation as a crucial step in plant microRNA biogenesis

scientific article published on February 2005

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

scientific article published on August 2005

Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage

scientific article

MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis

scientific article

MicroRNA1432 regulates rice drought stress tolerance by targeting the CALMODULIN-LIKE2 gene

scientific article published on 11 March 2024

MicroRNA156 conditions auxin sensitivity to enable growth plasticity in response to environmental changes in Arabidopsis

scientific article published on 22 March 2023

MicroRNAs inhibit the translation of target mRNAs on the endoplasmic reticulum in Arabidopsis

scientific article

NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis

scientific article published on 29 May 2019

NAD+-capped RNAs are widespread in the Arabidopsis transcriptome and can probably be translated

scientific article published on 29 May 2019

NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis

scientific article published on 19 February 2013

Noncoding RNAs and DNA Methylation in Plants.

scientific article

Nucleus and Genome: Small RNAs

scientific article published in 2013

Oomycete pathogens encode RNA silencing suppressors

scientific article

Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2.

scientific article published on 30 July 2010

PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications

scientific article published on 05 April 2021

PARylation of the forkhead-associated domain protein DAWDLE regulates plant immunity

scientific article published on 18 October 2016

PAUSED, a putative exportin-t, acts pleiotropically in Arabidopsis development but is dispensable for viability

scientific article

POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis

scientific article published on 05 December 2016

POWERDRESS and diversified expression of the MIR172 gene family bolster the floral stem cell network

scientific article

Parallel analysis of RNA ends reveals global microRNA-mediated target RNA cleavage in maize

scientific article published on 4 June 2022

Plant and animal small RNA communications between cells and organisms

scientific article published in March 2022

Plant development--a snapshot in 2012

scientific article published on 03 January 2012

Plant microRNAs at a glance ⬇️

scientific article published on July 29, 2010

Plant phase extraction (PPE): A novel method for enhanced discovery of RNA-binding proteome in plants

scientific article published on 2 June 2022

Plant phase extraction: A method for enhanced discovery of the RNA-binding proteome and its dynamics in plants

scientific article published on 2 August 2023

Posttranscriptional control of plant development.

scientific article published on February 2004

Prevalent cytidylation and uridylation of precursor miRNAs in Arabidopsis

scientific article published on 02 December 2019

Quality control and evaluation of plant epigenomics data

scientific article published on 20 January 2022

RBV, an evolutionarily conserved WD40 repeat protein, promotes microRNA biogenesis and loading into ARGONAUTE1 in Arabidopsis

scientific article published on 2 June 2021

RNA Quality Control as a Key to Suppressing RNA Silencing of Endogenous Genes in Plants

scientific article published on 30 March 2016

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

scientific article published on July 2012

RNA-seq analysis on Arabidopsis ago 1-27 mutant

scientific article published in 2017

RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

scientific article

RST1 Is a FREE1 Suppressor That Negatively Regulates Vacuolar Trafficking in Arabidopsis

scientific article published on 20 June 2019

Regulation of Female Germline Specification via Small RNA Mobility in Arabidopsis

scientific article published on 23 July 2020

Regulation of small RNA stability: methylation and beyond.

scientific article

Roles of small RNAs in soybean defense against Phytophthora sojae infection.

scientific article published on 28 July 2014

SPAAC-NAD-seq, a sensitive and accurate method to profile NAD-capped transcripts

scientific article published on 30 March 2021

SUVH1, a Su(var)3-9 family member, promotes the expression of genes targeted by DNA methylation

scientific article published on 22 September 2015

Secrets of the MIR172 family in plant development and flowering unveiled

scientific article published in February 2021

Small RNA-directed epigenetic natural variation in Arabidopsis thaliana

scientific article

Small RNAs and their roles in plant development.

scientific article published on January 2009

Small RNAs in Plants

scientific article published in 2014

Small RNAs in development - insights from plants.

scientific article

Small RNAs meet their targets: when methylation defends miRNAs from uridylation

scientific article

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

scientific article published on 05 October 2009

Special issue on plant epigenetics.

scientific article

Structural insights into mechanisms of the small RNA methyltransferase HEN1

scientific article

Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.

scientific article published on 30 April 2015

TRANS-ACTING SIRNA3-derived short interfering RNAs confer cleavage of mRNAs in rice

scientific article published on 20 January 2022

The Arabidopsis MOS4-associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing

scientific article published on 25 September 2017

The Arabidopsis SWI2/SNF2 chromatin Remodeler BRAHMA regulates polycomb function during vegetative development and directly activates the flowering repressor gene SVP.

scientific article

The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation

scientific article

The DEAD-box helicase RCF1 plays roles in miRNA biogenesis and RNA splicing in Arabidopsis

scientific article published on 4 April 2023

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

scientific article

The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status

scientific article published on 28 April 2017

The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities

scientific article published in March 2023

The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities

scientific article published on 30 September 2022

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis

scientific article published on 23 January 2019

The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module

scientific article published on 24 May 2017

The anaphase-promoting complex is a dual integrator that regulates both MicroRNA-mediated transcriptional regulation of cyclin B1 and degradation of Cyclin B1 during Arabidopsis male gametophyte development

scientific article published on 25 March 2011

The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs

scientific article published in Nature Communications

The evolution of microRNAs in plants.

scientific article published on 22 November 2016

The exosome and trans-acting small interfering RNAs regulate cuticular wax biosynthesis during Arabidopsis inflorescence stem development.

scientific article

The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element ⬇️

scientific article published on April 18, 2012

The plant Mediator and its role in noncoding RNA production

scientific article published on April 2011

The regulation of genes and genomes by small RNAs

scientific article published on 4 April 2007

The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.

scientific article

Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity

scientific article published on 13 March 2024

Traffic into silence: endomembranes and post-transcriptional RNA silencing

scientific article

Transcriptional silencing induced by Arabidopsis T-DNA mutants is associated with 35S promoter siRNAs and requires genes involved in siRNA-mediated chromatin silencing.

scientific article

Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis

scientific article published on 2 May 2006

Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana

scientific article

Uridylation and adenylation of RNAs

scientific article published on 27 October 2015

Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.

scientific article published on 29 March 2012

Use of NAD tagSeq II to identify growth phase-dependent alterations in RNA NAD capping

scientific article published on 6 April 2021

Widespread occurrence of microRNA-mediated target cleavage on membrane-bound polysomes

scientific article published on 5 January 2021

miR172 regulates stem cell fate and defines the inner boundary of APETALA3 and PISTILLATA expression domain in Arabidopsis floral meristems

scientific article

microRNA biogenesis and stabilization in plants

scientific article published in September 2023

microRNA biogenesis and turnover in plants

scientific article published on January 2012

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

scientific article

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