List of works - Konrad Förstner

A New Bioactive Compound From the Marine Sponge-Derived sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation

scientific article published in 2018

A Novel Mechanism of Inactivating Antibacterial Nitro Compounds in the Human Pathogen Staphylococcus aureus by Overexpression of a NADH-Dependent Flavin Nitroreductase

scientific article published on 13 November 2017

A computational screen for type I polyketide synthases in metagenomics shotgun data

scientific article

A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria

scientific article published on 15 August 2019

A molecular study of microbe transfer between distant environments

scientific article

A nitrile hydratase in the eukaryote Monosiga brevicollis

scientific article published in 2008

A non‐coding RNA from the intercellular adhesion ( ica ) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesion (PIA)‐mediated biofilm formation

scientific article published on 06 April 2019

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

article

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins

scientific article (publication date: 2 March 2017)

An Open Science Peer Review Oath

scientific article published on 9 January 2015

An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

article

An open science peer review oath

scientific article, version 1

Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein

scientific article

Antrag für ein DFG-Rundgespräch zum Thema “Offene Wissenschaft in Deutschland”

2014 grant proposal for a strategic meeting on open science in Germany

Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1

scientific article

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq

scientific article published in 2019

CoLoC-seq probes the global topology of organelle transcriptomes

scientific article published on 20 December 2022

Collaborative platforms for streamlining workflows in Open Science

scientific article

Collaborative platforms for streamlining workflows in Open Science

scientific article published on 27 June 2011

Comparative analysis of environmental sequences: potential and challenges

scientific article

Computational Analysis of RNA-Protein Interactions via Deep Sequencing.

scientific article

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

scientific article

Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1

scientific article published on 13 September 2018

Cytosolic Sensing of Intracellular <i>Staphylococcus aureus</i> by Mast Cells Elicits a Type I IFN Response That Enhances Cell-Autonomous Immunity

scientific article published in April 2022

Development of Similarity Measures From Graph-Structured Bibliographic Metadata: An Application to Identify Scientific Convergence

scientific article published in 2024

Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress

scientific article published on 27 March 2020

Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation

scientific article

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

scientific article

Dual-RNAseq Analysis Unravels Virus-Host Interactions of MetSV and Methanosarcina mazei

scientific article published on 21 November 2022

Effect of Shear Stress on Pseudomonas aeruginosaIsolated from the Cystic Fibrosis Lung

scientific article (publication date: 2 August 2016)

Enterotypes of the human gut microbiome

scientific article

Environments shape the nucleotide composition of genomes

scientific article

Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition

scientific article

Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia

scientific article

Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection

scientific article published on 22 August 2014

GT‐rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes

scientific article

Genome organization and DNA accessibility control antigenic variation in trypanosomes

scientific article published in Nature

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

scientific article (publication date: 12 August 2016)

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation

scientific article

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

scientific article

Get the most out of your metagenome: computational analysis of environmental sequence data

scientific article

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

scientific article

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

scientific article (publication date: 11 October 2016)

Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control

scientific article published on 30 March 2020

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli

scientific article published on 19 August 2020

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

scientific article

IL-12 from endogenous cDC1, and not vaccine DC, is required for Th1 induction

scientific article published on 21 May 2020

Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala

scientific article published on 10 May 2019

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection.

scientific article published on 29 May 2019

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

scientific article published on 10 October 2017

Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses

scientific article

InteractOA: Showcasing the representation of knowledge from scientific literature in Wikidata

scientific article published in 2024

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

scientific article

NFDI4Microbiota – national research data infrastructure for microbiota research

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

scientific article (publication date: 16 May 2016)

Non-professional efferocytosis of <i>Salmonella</i>-infected intestinal epithelial cells in the neonatal host

scientific article published on 2 February 2024

Novel molecular cues for dental defects in hypophosphatasia

scientific article published on 22 April 2020

ORCID for Wikidata. Data enrichment for scientometric applications ⬇️

scholarly article by Eva Seidlmayer published in October 2020

Open Science Radio

German podcast about Open Science

Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression

scientific article (publication date: 2 December 2015)

Plan I - Towards a sustainable research information infrastructure ⬇️

journal article published in 2021

Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus

article

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

scientific article (publication date: 16 August 2014)

Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens

scientific article

READemption

RNA-Seq data analysis software

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

scientific article

RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant

scientific article

RNase E cleavage shapes the transcriptome of Rhodobacter sphaeroides and strongly impacts phototrophic growth

scientific article published on 01 August 2018

RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides

scientific article

Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei

scientific article

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

scientific article

Sensory profiles and immune-related expression patterns of patients with and without neuropathic pain after peripheral nerve lesion

scientific article published in October 2019

SmashCommunity: a metagenomic annotation and analysis tool

scientific article

Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals

scientific article published on 6 June 2007

SuhB, a small non-coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA

article

Tagungsbericht WikiCite 2017 ⬇️

Take it Personally - A Python library for data enrichment for infometrical applications ⬇️

scholarly article by Eva Seidlmayer published in January 2019

Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA)

scientific article

Ten simple rules for organizing an unconference

scientific article

The Absence of the N-acyl-homoserine-lactone Autoinducer Synthase Genes traI and ngrI Increases the Copy Number of the Symbiotic Plasmid in Sinorhizobium fredii NGR234

scientific article (publication date: 18 November 2016)

The Leader Peptide peTrpL Forms Antibiotic-Containing Ribonucleoprotein Complexes for Posttranscriptional Regulation of Multiresistance Genes

scientific article published on 16 June 2020

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

article

The Probiotic Escherichia coli Strain Nissle 1917 Combats Lambdoid Bacteriophages stx and λ.

scientific article

The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens

scientific article published on 18 March 2019

The induction of natural competence adapts staphylococcal metabolism to infection

scientific article published on 21 March 2022

The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase

scientific article

The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation

scientific article (publication date: 17 October 2016)

The sigmaB regulon in Staphylococcus aureus and its regulation

scientific article

The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover

scientific article published on 01 April 2021

The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities

scientific article published in March 2019

Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases

scientific article (publication date: 14 February 2017)

Wikis in scholarly publishing

scientific article published on 6 September 2011

Wikis in scholarly publishing

scientific article published in 2011

YBEY is an essential biogenesis factor for mitochondrial ribosomes

scientific article published on 17 March 2020

cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides

scientific article (publication date: 15 September 2016)

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42

scientific article

dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome

article

sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1

scientific article (publication date: 15 March 2017)

List of works by Konrad Förstner

A New Bioactive Compound From the Marine Sponge-Derived sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation

A Novel Mechanism of Inactivating Antibacterial Nitro Compounds in the Human Pathogen Staphylococcus aureus by Overexpression of a NADH-Dependent Flavin Nitroreductase

A computational screen for type I polyketide synthases in metagenomics shotgun data

A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria

A molecular study of microbe transfer between distant environments

A nitrile hydratase in the eukaryote Monosiga brevicollis

A non‐coding RNA from the intercellular adhesion ( ica ) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesion (PIA)‐mediated biofilm formation

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins

An Open Science Peer Review Oath

An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

An open science peer review oath

Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein

Antrag für ein DFG-Rundgespräch zum Thema “Offene Wissenschaft in Deutschland”

Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq

CoLoC-seq probes the global topology of organelle transcriptomes

Collaborative platforms for streamlining workflows in Open Science

Collaborative platforms for streamlining workflows in Open Science

Comparative analysis of environmental sequences: potential and challenges

Computational Analysis of RNA-Protein Interactions via Deep Sequencing.

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1

Cytosolic Sensing of Intracellular <i>Staphylococcus aureus</i> by Mast Cells Elicits a Type I IFN Response That Enhances Cell-Autonomous Immunity

Development of Similarity Measures From Graph-Structured Bibliographic Metadata: An Application to Identify Scientific Convergence

Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress

Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

Dual-RNAseq Analysis Unravels Virus-Host Interactions of MetSV and Methanosarcina mazei

Effect of Shear Stress on Pseudomonas aeruginosaIsolated from the Cystic Fibrosis Lung

Enterotypes of the human gut microbiome

Environments shape the nucleotide composition of genomes

Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition

Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia

Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection

GT‐rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes

Genome organization and DNA accessibility control antigenic variation in trypanosomes

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

Get the most out of your metagenome: computational analysis of environmental sequence data

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

IL-12 from endogenous cDC1, and not vaccine DC, is required for Th1 induction

Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection.

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses

InteractOA: Showcasing the representation of knowledge from scientific literature in Wikidata

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

NFDI4Microbiota – national research data infrastructure for microbiota research

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

Non-professional efferocytosis of <i>Salmonella</i>-infected intestinal epithelial cells in the neonatal host

Novel molecular cues for dental defects in hypophosphatasia

ORCID for Wikidata. Data enrichment for scientometric applications ⬇️

Open Science Radio

Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression

Plan I - Towards a sustainable research information infrastructure ⬇️

Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens

READemption

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant

RNase E cleavage shapes the transcriptome of Rhodobacter sphaeroides and strongly impacts phototrophic growth

RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides

Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

Sensory profiles and immune-related expression patterns of patients with and without neuropathic pain after peripheral nerve lesion

SmashCommunity: a metagenomic annotation and analysis tool

Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals

SuhB, a small non-coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA

Tagungsbericht WikiCite 2017 ⬇️

Take it Personally - A Python library for data enrichment for infometrical applications ⬇️

Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA)

Ten simple rules for organizing an unconference