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List of works by Eric P. Xing

A Hierarchical Bayesian Markovian Model for Motifs in Biopolymer Sequences ⬇️

scientific article published in January 2003

A Max Margin Framework on Image Annotation and Multimodal Image Retrieval

A Scalable Approach to Probabilistic Latent Space Inference of Large-Scale Networks

scientific article published in January 2013

A Scalable Approach to Probabilistic Latent Space Inference of Large-Scale Networks ⬇️

A latent mixed membership model for relational data

article

A multivariate regression approach to association analysis of a quantitative trait network

scientific article published on June 2009

A network-driven approach for genome-wide association mapping

scientific article published on June 2016

A state-space mixed membership blockmodel for dynamic network tomography ⬇️

scholarly article from 'The Annals of Applied Statistics' published in 2010

A time-varying group sparse additive model for genome-wide association studies of dynamic complex traits

scientific article published on 13 June 2016

Adaptive Multi-Task Lasso: with Application to eQTL Detection ⬇️

An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations

scientific article published on May 2016

AutoSync: Learning to Synchronize for Data-Parallel Distributed Deep Learning ⬇️

scientific article published in November 2020

Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning

scholarly article by Haohan Wang et al published 2019 in Pacific Symposium on Biocomputing

Automatic mining of fruit fly embryo images

scholarly article published 2006

Backward genotype-transcript-phenotype association mapping.

scientific article published on 13 September 2017

BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes

Bayesian haplotype inference via the Dirichlet process

scientific article published in April 2007

CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing

scientific article

Combining Stochastic Block Models and Mixed Membership for Statistical Network Analysis

Comparison of normalization methods for CodeLink Bioarray data

scientific article

ConnNet: A Long-Range Relation-Aware Pixel-Connectivity Network for Salient Segmentation

scientific article published on 14 December 2018

DAGs with NO TEARS: Continuous Optimization for Structure Learning ⬇️

DISCOVER: a feature-based discriminative method for motif search in complex genomes

scientific article

Deep Generative Models with Learnable Knowledge Constraints ⬇️

Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms. ⬇️

scientific article published on July 2017

Deep mixed model for marginal epistasis detection and population stratification correction in genome-wide association studies

scientific article published on 27 December 2019

Dependent nonparametric trees for dynamic hierarchical clustering ⬇️

scientific article published in January 2014

Diffusion of lexical change in social media

scientific article

Discovering weaker genetic associations guided by known associations

scientific article published on 24 February 2020

Discovery of the gene signature for acute lung injury in patients with sepsis

scientific article published on 27 January 2009

Distance Metric Learning with Application to Clustering with Side-Information ⬇️

scientific article published in January 2003

Effects of sample selection bias on the accuracy of population structure and ancestry inference

scientific article published on 17 March 2014

Enabling dynamic network analysis through visualization in TVNViewer ⬇️

scientific article published on August 16, 2012

Enhanced max margin learning on multimodal data mining in a multimedia database

Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system ⬇️

scientific article published on April 3, 2012

Ensembles of Lasso Screening Rules

scientific article published on 24 November 2017

Estimating networks with jumps

scientific article published on January 2012

Estimating time-varying networks ⬇️

scholarly article from 'The Annals of Applied Statistics' published in 2010

Evaluation of normalization methods for cDNA microarray data by k-NN classification

scientific article

Exploiting genome structure in association analysis

scientific article published on 06 May 2011

Finding genome-transcriptome-phenome association with structured association mapping and visualization in GenAMap

scientific article published on January 1, 2012

FlexiFaCT: Scalable Flexible Factorization of Coupled Tensors on Hadoop

Free energy estimates of all-atom protein structures using generalized belief propagation

scientific article published in September 2008

From Lasso regression to Feature vector machine ⬇️

scientific article published in January 2006

GINI: from ISH images to gene interaction networks

scientific article

GWAS in a box: statistical and visual analytics of structured associations via GenAMap

scientific article

Gene expression profiling of asthma phenotypes demonstrates molecular signatures of atopy and asthma control.

scientific article published on 11 January 2016

Graph Estimation From Multi-Attribute Data

scientific article

Group Sparse Additive Models

scientific article published in January 2012

HM-BiTAM: Bilingual Topic Exploration, Word Alignment, and Translation ⬇️

scientific article published in January 2008

Harnessing Deep Neural Networks with Logic Rules

scientific article published in 2016

Heterogeneous multitask learning with joint sparsity constraints ⬇️

Hidden Markov Dirichlet Process: Modeling Genetic Recombination in Open Ancestral Space ⬇️

scientific article published in January 2007

High-dimensional feature selection by feature-wise kernelized Lasso

scientific article published on 8 October 2013

Hybrid Retrieval-Generation Reinforced Agent for Medical Image Report Generation ⬇️

scholarly article by Yuan Li et al published 2018 in Advances in Neural Information Processing Systems 31

Improving GAN Training with Probability Ratio Clipping and Sample Reweighting ⬇️

scientific article published in November 2020

Infinite Latent SVM for Classification and Multi-task Learning ⬇️

scientific article published in January 2011

Interpreting anonymous DNA samples from mass disasters--probabilistic forensic inference using genetic markers

scientific article published on July 2006

KELLER: estimating time-varying interactions between genes

scientific article published on June 2009

Kernel Embeddings of Latent Tree Graphical Models ⬇️

scientific article published in January 2011

Kernel methods for large-scale genomic data analysis

scientific article

LOGOS: a modular Bayesian model for de novo motif detection

scientific article

Large Margin Learning of Upstream Scene Understanding Models ⬇️

Large-Scale Category Structure Aware Image Categorization ⬇️

scientific article published in January 2011

Learning Data Manipulation for Augmentation and Weighting ⬇️

scientific article published in January 2019

Learning HMMs with Nonparametric Emissions via Spectral Decompositions of Continuous Matrices ⬇️

scientific article published in January 2016

Learning Pipelines with Limited Data and Domain Knowledge: A Study in Parsing Physics Problems ⬇️

Learning Robust Global Representations by Penalizing Local Predictive Power ⬇️

Learning Sample-Specific Models with Low-Rank Personalized Regression ⬇️

Learning Scalable Deep Kernels with Recurrent Structure

scientific article published on 01 January 2017

Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs ⬇️

scientific article published on June 15, 2012

Logos: a modular bayesian model for de novo motif detection

scientific article published in March 2004

Mixed Membership Stochastic Blockmodels ⬇️

scientific article published on September 1, 2008

Monte Carlo Methods for Maximum Margin Supervised Topic Models ⬇️

scientific article published in January 2012

More Effective Distributed ML via a Stale Synchronous Parallel Parameter Server ⬇️

More Effective Distributed ML via a Stale Synchronous Parallel Parameter Server.

scientific article

MotifPrototyper: a Bayesian profile model for motif families

scientific article (publication date: 20 July 2004)

Multi-population GWA mapping via multi-task regularized regression

scientific article

Multimodal Data Mining in a Multimedia Database Based on Structured Max Margin Learning

scientific article published in 2016

Multiplex confounding factor correction for genomic association mapping with squared sparse linear mixed model

scholarly article by Haohan Wang published in August 2018

Multiplex confounding factor correction for genomic association mapping with squared sparse linear mixed model

Multiscale Community Blockmodel for Network Exploration

scientific article published on January 2012

NP-MuScL: unsupervised global prediction of interaction networks from multiple data sources

scientific article

Network analysis of breast cancer progression and reversal using a tree-evolving network algorithm

scientific article (publication date: July 2014)

Neural Architecture Search with Bayesian Optimisation and Optimal Transport ⬇️

article by Kirthevasan Kandasamy et al published 2018 in Advances in Neural Information Processing Systems 31

Object Bank: A High-Level Image Representation for Scene Classification & Semantic Feature Sparsification ⬇️

On Model Parallelization and Scheduling Strategies for Distributed Machine Learning ⬇️

scientific article published in January 2014

On Triangular versus Edge Representations --- Towards Scalable Modeling of Networks ⬇️

scientific article published in January 2012

On the Complexity of Exploration in Goal-Driven Navigation ⬇️

On the Generation of Medical Dialogues for COVID-19

scientific article published on 15 May 2020

Partially Observed Maximum Entropy Discrimination Markov Networks ⬇️

Personalized regression enables sample-specific pan-cancer analysis.

scientific article published in July 2018

Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species

scientific article published on 05 November 2020

Precision Lasso: accounting for correlations and linear dependencies in high-dimensional genomic data.

scientific article

Predictive Subspace Learning for Multi-view Data: a Large Margin Approach ⬇️

Recovering time-varying networks of dependencies in social and biological studies

scholarly article

Regularizing Black-box Models for Improved Interpretability ⬇️

scientific article published in November 2020

Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications

scientific article published on 01 January 2019

Restricting exchangeable nonparametric distributions ⬇️

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach

scientific article

Robust reverse engineering of dynamic gene networks under sample size heterogeneity

scientific article published on January 2014

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images

scientific article

Sample-Efficient Deep Learning for COVID-19 Diagnosis Based on CT Scans

scientific article published on 17 April 2020

Semantic Pooling for Complex Event Analysis in Untrimmed Videos

scientific article published on 13 September 2016

Semi-supervised Learning Based on Semiparametric Regularization

Sparsistent Learning of Varying-coefficient Models with Structural Changes ⬇️

scientific article published in January 2009

Specific and Shared Causal Relation Modeling and Mechanism-Based Clustering ⬇️

Spectrum: joint Bayesian inference of population structure and recombination events.

scientific article published in July 2007

Statistical estimation of correlated genome associations to a quantitative trait network

scientific article

Stochastic Variational Deep Kernel Learning ⬇️

scientific article published in January 2016

StructHDP: automatic inference of number of clusters and population structure from admixed genotype data ⬇️

scientific article

Structured Correspondence Topic Models for Mining Captioned Figures in Biological Literature

scientific article published on January 2009

Structured Generative Adversarial Networks ⬇️

scientific article published in January 2017

Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature

article published in 2010

Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature

scientific article published on July 2010

Structured association analysis leads to insight into Saccharomyces cerevisiae gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules

scientific article published on 21 March 2013

Symbolic Graph Reasoning Meets Convolutions ⬇️

Symmetric Correspondence Topic Models for Multilingual Text Analysis ⬇️

scientific article published in January 2012

TREEGL: reverse engineering tree-evolving gene networks underlying developing biological lineages ⬇️

scientific article published on July 1, 2011

TVNViewer: An interactive visualization tool for exploring networks that change over time or space ⬇️

scientific article published on May 5, 2011

The Human Kernel ⬇️

The Sample Complexity of Semi-Supervised Learning with Nonparametric Mixture Models ⬇️

Time-Varying Dynamic Bayesian Networks ⬇️

scientific article published in January 2009

Unsupervised Text Style Transfer using Language Models as Discriminators ⬇️

Variable Selection in Heterogeneous Datasets: A Truncated-rank Sparse Linear Mixed Model with Applications to Genome-wide Association Studies

scientific article published in November 2017

Variable selection in heterogeneous datasets: A truncated-rank sparse linear mixed model with applications to genome-wide association studies

scientific article published on 27 April 2018

Variance Reduction for Stochastic Gradient Optimization ⬇️

Variance Reduction in Stochastic Gradient Langevin Dynamics. ⬇️

scientific article published on December 2016

WGAN domain adaptation for the joint optic disc-and-cup segmentation in fundus images

scientific article published on 22 May 2020

mStruct: inference of population structure in light of both genetic admixing and allele mutations

scientific article published on 10 April 2009

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